Wall clock time and date at job start Tue Mar 31 2020 22:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47134 * 2 1 4 4 C 1.38627 * 120.75831 * 270.29839 * 3 2 1 5 5 C 1.38562 * 119.35115 * 180.27769 * 4 3 2 6 6 N 1.31520 * 120.90427 * 359.69765 * 5 4 3 7 7 C 1.32722 * 121.64395 * 0.02562 * 6 5 4 8 8 C 1.48169 * 119.72355 * 180.02562 * 7 6 5 9 9 O 1.21519 * 119.99499 * 179.97438 * 8 7 6 10 10 N 1.34771 * 119.99995 * 359.97438 * 8 7 6 11 11 C 1.46499 * 119.99989 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47671 * 179.97438 * 11 10 8 13 13 C 1.38233 * 119.99816 * 269.73159 * 12 11 10 14 14 C 1.38243 * 119.99690 * 179.76139 * 13 12 11 15 15 C 1.38236 * 120.00103 * 0.48173 * 14 13 12 16 16 C 1.50697 * 120.00102 * 179.76757 * 15 14 13 17 17 N 1.46499 * 109.47135 * 270.02632 * 16 15 14 18 18 C 1.36933 * 119.99647 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00420 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99680 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00322 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99958 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47362 * 59.99713 * 22 20 18 24 24 H 1.48500 * 109.47264 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47193 * 299.99664 * 22 20 18 26 26 C 1.38232 * 119.99684 * 359.78976 * 15 14 13 27 27 C 1.38231 * 120.00390 * 359.95900 * 26 15 14 28 28 C 1.38591 * 120.75284 * 89.99663 * 3 2 1 29 29 H 1.09002 * 109.47215 * 60.00009 * 1 2 3 30 30 H 1.09000 * 109.46507 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46975 * 299.99650 * 1 2 3 32 32 H 1.08999 * 109.46975 * 240.00350 * 2 1 3 33 33 H 1.09001 * 109.47077 * 120.00525 * 2 1 3 34 34 H 1.07998 * 120.32460 * 0.02562 * 4 3 2 35 35 H 1.07994 * 119.54770 * 179.71645 * 5 4 3 36 36 H 0.96995 * 120.00288 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47267 * 299.99928 * 11 10 8 38 38 H 1.09005 * 109.46940 * 59.99822 * 11 10 8 39 39 H 1.08003 * 120.00391 * 359.97438 * 13 12 11 40 40 H 1.08000 * 119.99853 * 180.24872 * 14 13 12 41 41 H 1.09002 * 109.47010 * 30.02334 * 16 15 14 42 42 H 1.08997 * 109.47053 * 150.01711 * 16 15 14 43 43 H 0.96995 * 119.99723 * 359.97438 * 17 16 15 44 44 H 0.96998 * 120.00202 * 179.97438 * 21 20 18 45 45 H 1.07997 * 119.99856 * 179.97438 * 26 15 14 46 46 H 1.08003 * 120.00288 * 180.02562 * 27 26 15 47 47 H 1.08002 * 120.47417 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0913 -1.1913 5 6 2.7302 3.3952 -1.1573 6 7 2.9513 4.0039 -0.0126 7 6 2.7383 3.3998 1.1498 8 6 3.0012 4.1261 2.4143 9 8 2.8075 3.5779 3.4813 10 7 3.4552 5.3946 2.3809 11 6 3.7146 6.1129 3.6311 12 6 4.2116 7.5010 3.3193 13 6 5.5668 7.7348 3.1799 14 6 6.0223 9.0072 2.8890 15 6 5.1233 10.0476 2.7473 16 6 5.6202 11.4357 2.4353 17 7 5.8797 12.1539 3.6855 18 6 6.3410 13.4428 3.6515 19 1 6.5139 13.9297 2.7031 20 6 6.5863 14.1236 4.8361 21 7 6.3752 13.5304 5.9919 22 14 7.2163 15.8815 4.7898 23 1 6.2353 16.7404 4.0790 24 1 7.3958 16.3798 6.1772 25 1 8.5181 15.9223 4.0764 26 6 3.7684 9.8148 2.8921 27 6 3.3125 8.5415 3.1779 28 6 2.2685 2.0889 1.1910 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.0837 1.6007 -2.1366 35 1 2.9153 3.9190 -2.0834 36 1 3.6102 5.8320 1.5292 37 1 2.7937 6.1780 4.2106 38 1 4.4696 5.5781 4.2075 39 1 6.2696 6.9228 3.2950 40 1 7.0809 9.1891 2.7762 41 1 6.5412 11.3702 1.8560 42 1 4.8656 11.9707 1.8586 43 1 5.7240 11.7168 4.5372 44 1 6.5470 14.0060 6.8197 45 1 3.0660 10.6277 2.7818 46 1 2.2539 8.3596 3.2907 47 1 2.0956 1.5987 2.1377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753588954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:17 Heat of formation + Delta-G solvation = 23.954764 kcal Electronic energy + Delta-G solvation = -26777.604918 eV Core-core repulsion = 22924.875903 eV Total energy + Delta-G solvation = -3852.729015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.05259 -39.62561 -38.87049 -35.65729 -35.45513 -34.30091 -32.24945 -31.72514 -30.87992 -30.68444 -30.08261 -27.23841 -25.33774 -24.77782 -23.84012 -22.64181 -22.45772 -22.23680 -20.59129 -20.39230 -18.18137 -17.31353 -17.24004 -16.50491 -15.89364 -15.82727 -15.71399 -15.23635 -15.08413 -14.75826 -14.53509 -14.47179 -14.22349 -13.96667 -13.86782 -13.37280 -13.18680 -13.14143 -13.02865 -12.72452 -12.49249 -12.31104 -12.05619 -12.03264 -11.81647 -11.56890 -11.07237 -10.83706 -10.70461 -10.64736 -10.55138 -10.08519 -10.07432 -9.93591 -9.76356 -9.66759 -9.22766 -8.89330 -8.65242 -8.41296 -6.93841 -5.75876 -3.05867 0.24474 0.73415 1.42416 1.67862 2.44011 2.94779 3.44626 3.47635 3.48722 3.50106 3.76791 4.00515 4.08831 4.25303 4.50911 4.56944 4.62118 4.66105 4.71898 4.74368 4.89345 4.98249 5.04647 5.22307 5.23770 5.32271 5.35277 5.35703 5.40479 5.45472 5.57436 5.59810 5.64748 5.77343 5.80431 5.88056 6.12288 6.16638 6.18892 6.19856 6.23597 6.51079 6.60123 6.66140 6.72838 7.12692 7.16037 7.25534 7.45625 7.68770 7.94408 8.41771 9.53268 10.09421 10.45299 11.46481 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033530 B = 0.001584 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.883248 B =17670.028658 C =18095.584661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.046 4.046 4 C -0.151 4.151 5 C 0.102 3.898 6 N -0.461 5.461 7 C 0.083 3.917 8 C 0.568 3.432 9 O -0.536 6.536 10 N -0.702 5.702 11 C 0.164 3.836 12 C -0.125 4.125 13 C -0.102 4.102 14 C -0.106 4.106 15 C -0.063 4.063 16 C 0.184 3.816 17 N -0.726 5.726 18 C -0.244 4.244 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.106 4.106 27 C -0.102 4.102 28 C -0.111 4.111 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.164 0.836 36 H 0.413 0.587 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.124 0.876 46 H 0.119 0.881 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.780 -28.830 -15.547 34.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 C -0.054 4.054 4 C -0.171 4.171 5 C -0.057 4.057 6 N -0.173 5.173 7 C -0.055 4.055 8 C 0.353 3.647 9 O -0.413 6.413 10 N -0.353 5.353 11 C 0.041 3.959 12 C -0.125 4.125 13 C -0.121 4.121 14 C -0.125 4.125 15 C -0.064 4.064 16 C 0.057 3.943 17 N -0.371 5.371 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.125 4.125 27 C -0.121 4.121 28 C -0.132 4.132 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.157 0.843 35 H 0.181 0.819 36 H 0.250 0.750 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.220 0.780 44 H 0.066 0.934 45 H 0.142 0.858 46 H 0.137 0.863 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.539 -28.159 -14.759 33.493 hybrid contribution 0.119 0.309 -0.129 0.355 sum -10.420 -27.850 -14.887 33.254 Atomic orbital electron populations 1.21760 0.93945 1.02350 1.02546 1.20613 0.96736 0.91318 1.03784 1.20370 0.95532 0.96850 0.92612 1.22283 0.99719 0.96218 0.98916 1.22810 0.94797 0.92138 0.95949 1.67566 1.14106 1.37639 0.98014 1.21156 0.99417 0.92646 0.92238 1.17895 0.77638 0.81779 0.87409 1.90796 1.52660 1.67760 1.30034 1.45991 1.65343 1.13163 1.10792 1.20242 1.01284 0.88729 0.85608 1.19640 0.93944 0.94227 1.04733 1.20988 0.94555 0.97055 0.99462 1.21117 0.99898 0.92141 0.99335 1.20386 0.93268 0.96427 0.96327 1.19707 0.97180 0.86602 0.90790 1.42327 1.79703 1.12926 1.02130 1.19200 1.36338 0.89304 0.92636 0.91114 1.24759 1.02272 0.98530 0.95242 1.69665 1.54715 1.37009 0.96566 0.86245 0.78723 0.84570 0.76489 1.21230 1.21658 1.21224 1.21112 0.95547 0.96485 0.99346 1.20985 0.98983 0.92612 0.99486 1.22019 0.97268 0.94248 0.99634 0.92372 0.91786 0.92215 0.90232 0.90153 0.84270 0.81877 0.75019 0.90441 0.90444 0.86317 0.85800 0.95383 0.95389 0.78043 0.93411 0.85803 0.86322 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.89 37.16 0.37 -0.22 16 2 C -0.09 -0.37 6.11 -27.88 -0.17 -0.54 16 3 C -0.05 -0.30 5.17 -104.35 -0.54 -0.84 16 4 C -0.15 -0.85 9.82 -39.32 -0.39 -1.23 16 5 C 0.10 0.71 11.18 -17.57 -0.20 0.51 16 6 N -0.46 -4.47 9.54 -9.80 -0.09 -4.57 16 7 C 0.08 0.88 6.75 -83.00 -0.56 0.32 16 8 C 0.57 7.04 7.81 -12.18 -0.10 6.95 16 9 O -0.54 -7.98 16.32 5.35 0.09 -7.89 16 10 N -0.70 -7.97 5.54 -62.33 -0.35 -8.31 16 11 C 0.16 1.93 5.80 -5.19 -0.03 1.90 16 12 C -0.12 -1.62 5.25 -104.62 -0.55 -2.17 16 13 C -0.10 -1.39 9.70 -39.58 -0.38 -1.78 16 14 C -0.11 -1.68 9.70 -39.58 -0.38 -2.07 16 15 C -0.06 -1.11 5.25 -104.63 -0.55 -1.66 16 16 C 0.18 3.78 6.38 -5.20 -0.03 3.75 16 17 N -0.73 -18.74 5.59 -61.09 -0.34 -19.09 16 18 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 22 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 C -0.11 -1.68 9.70 -39.59 -0.38 -2.07 16 27 C -0.10 -1.39 9.70 -39.58 -0.38 -1.78 16 28 C -0.11 -0.98 9.34 -39.05 -0.36 -1.34 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.23 8.10 -51.93 -0.42 -0.19 16 33 H 0.08 0.32 8.10 -51.93 -0.42 -0.10 16 34 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 35 H 0.16 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.41 4.42 7.79 -40.82 -0.32 4.11 16 37 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 38 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 40 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 41 H 0.03 0.57 8.09 -51.93 -0.42 0.15 16 42 H 0.03 0.57 8.09 -51.93 -0.42 0.15 16 43 H 0.39 10.62 7.66 -40.82 -0.31 10.31 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 46 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 47 H 0.15 1.27 7.64 -52.49 -0.40 0.86 16 LS Contribution 404.53 15.07 6.10 6.10 Total: -1.00 -33.44 404.53 -10.69 -44.13 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.90 Total: 9.68 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -4.89 Total: -9.74 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.06 Total: -59.74 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.09 Total: -7.89 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.44 -10.69 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753588954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.086 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds