Wall clock time and date at job start Tue Mar 31 2020 22:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47134 * 2 1 4 4 C 1.38627 * 120.75831 * 270.29839 * 3 2 1 5 5 C 1.38562 * 119.35115 * 180.27769 * 4 3 2 6 6 N 1.31520 * 120.90427 * 359.69765 * 5 4 3 7 7 C 1.32722 * 121.64395 * 0.02562 * 6 5 4 8 8 C 1.48169 * 119.72355 * 180.02562 * 7 6 5 9 9 O 1.21519 * 119.99499 * 179.97438 * 8 7 6 10 10 N 1.34771 * 119.99995 * 359.97438 * 8 7 6 11 11 C 1.46499 * 119.99989 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47671 * 179.97438 * 11 10 8 13 13 C 1.38233 * 119.99816 * 269.73159 * 12 11 10 14 14 C 1.38243 * 119.99690 * 179.76139 * 13 12 11 15 15 C 1.38236 * 120.00103 * 0.48173 * 14 13 12 16 16 C 1.50697 * 120.00102 * 179.76757 * 15 14 13 17 17 N 1.46499 * 109.47135 * 270.02632 * 16 15 14 18 18 C 1.36933 * 119.99647 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00420 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99680 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00322 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99958 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47362 * 59.99713 * 22 20 18 24 24 H 1.48500 * 109.47264 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47193 * 299.99664 * 22 20 18 26 26 C 1.38232 * 119.99684 * 359.78976 * 15 14 13 27 27 C 1.38231 * 120.00390 * 359.95900 * 26 15 14 28 28 C 1.38591 * 120.75284 * 89.99663 * 3 2 1 29 29 H 1.09002 * 109.47215 * 60.00009 * 1 2 3 30 30 H 1.09000 * 109.46507 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46975 * 299.99650 * 1 2 3 32 32 H 1.08999 * 109.46975 * 240.00350 * 2 1 3 33 33 H 1.09001 * 109.47077 * 120.00525 * 2 1 3 34 34 H 1.07998 * 120.32460 * 0.02562 * 4 3 2 35 35 H 1.07994 * 119.54770 * 179.71645 * 5 4 3 36 36 H 0.96995 * 120.00288 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47267 * 299.99928 * 11 10 8 38 38 H 1.09005 * 109.46940 * 59.99822 * 11 10 8 39 39 H 1.08003 * 120.00391 * 359.97438 * 13 12 11 40 40 H 1.08000 * 119.99853 * 180.24872 * 14 13 12 41 41 H 1.09002 * 109.47010 * 30.02334 * 16 15 14 42 42 H 1.08997 * 109.47053 * 150.01711 * 16 15 14 43 43 H 0.96995 * 119.99723 * 359.97438 * 17 16 15 44 44 H 0.96998 * 120.00202 * 179.97438 * 21 20 18 45 45 H 1.07997 * 119.99856 * 179.97438 * 26 15 14 46 46 H 1.08003 * 120.00288 * 180.02562 * 27 26 15 47 47 H 1.08002 * 120.47417 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0913 -1.1913 5 6 2.7302 3.3952 -1.1573 6 7 2.9513 4.0039 -0.0126 7 6 2.7383 3.3998 1.1498 8 6 3.0012 4.1261 2.4143 9 8 2.8075 3.5779 3.4813 10 7 3.4552 5.3946 2.3809 11 6 3.7146 6.1129 3.6311 12 6 4.2116 7.5010 3.3193 13 6 5.5668 7.7348 3.1799 14 6 6.0223 9.0072 2.8890 15 6 5.1233 10.0476 2.7473 16 6 5.6202 11.4357 2.4353 17 7 5.8797 12.1539 3.6855 18 6 6.3410 13.4428 3.6515 19 1 6.5139 13.9297 2.7031 20 6 6.5863 14.1236 4.8361 21 7 6.3752 13.5304 5.9919 22 14 7.2163 15.8815 4.7898 23 1 6.2353 16.7404 4.0790 24 1 7.3958 16.3798 6.1772 25 1 8.5181 15.9223 4.0764 26 6 3.7684 9.8148 2.8921 27 6 3.3125 8.5415 3.1779 28 6 2.2685 2.0889 1.1910 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.0837 1.6007 -2.1366 35 1 2.9153 3.9190 -2.0834 36 1 3.6102 5.8320 1.5292 37 1 2.7937 6.1780 4.2106 38 1 4.4696 5.5781 4.2075 39 1 6.2696 6.9228 3.2950 40 1 7.0809 9.1891 2.7762 41 1 6.5412 11.3702 1.8560 42 1 4.8656 11.9707 1.8586 43 1 5.7240 11.7168 4.5372 44 1 6.5470 14.0060 6.8197 45 1 3.0660 10.6277 2.7818 46 1 2.2539 8.3596 3.2907 47 1 2.0956 1.5987 2.1377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753588954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:17 Heat of formation + Delta-G solvation = 3.618749 kcal Electronic energy + Delta-G solvation = -26778.486753 eV Core-core repulsion = 22924.875903 eV Total energy + Delta-G solvation = -3853.610851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.74173 -40.64422 -39.89208 -36.97713 -36.10443 -35.70951 -33.76121 -32.57825 -31.86472 -31.72960 -31.24422 -28.58916 -26.44555 -25.57581 -24.89622 -23.96421 -23.64036 -23.07289 -21.71080 -21.33381 -19.32874 -18.95556 -17.97053 -17.19920 -16.87585 -16.85920 -16.68035 -16.48743 -16.15219 -16.08699 -15.70200 -15.25199 -15.05568 -15.00307 -14.78173 -14.55092 -14.47831 -14.35184 -14.04107 -13.71072 -13.46104 -13.29983 -13.11734 -13.00232 -12.99035 -12.72765 -12.38676 -12.24485 -11.96943 -11.92512 -11.89457 -11.75082 -11.49444 -10.97373 -10.62533 -10.56250 -10.37463 -10.08239 -9.82935 -9.66229 -9.03605 -7.95527 -5.26164 -0.39148 0.19618 0.22551 0.49660 1.47579 1.51073 1.57319 1.64285 2.04835 2.55427 2.82142 2.84412 3.15201 3.37422 3.59321 3.63182 3.75260 3.87776 4.00095 4.03179 4.03491 4.11964 4.24175 4.25732 4.26474 4.43582 4.48459 4.55069 4.61538 4.63738 4.67746 4.75722 4.88490 4.89006 4.94332 4.99091 5.05963 5.09229 5.18741 5.24837 5.34776 5.36923 5.44210 5.47235 5.58144 5.62974 5.79977 6.04826 6.24712 6.32883 6.76705 7.04827 7.31509 8.04341 8.29817 9.27501 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033530 B = 0.001584 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.883248 B =17670.028658 C =18095.584661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.047 4.047 4 C -0.137 4.137 5 C 0.095 3.905 6 N -0.481 5.481 7 C 0.057 3.943 8 C 0.566 3.434 9 O -0.569 6.569 10 N -0.696 5.696 11 C 0.168 3.832 12 C -0.111 4.111 13 C -0.098 4.098 14 C -0.115 4.115 15 C -0.086 4.086 16 C 0.186 3.814 17 N -0.739 5.739 18 C -0.251 4.251 19 H 0.079 0.921 20 C -0.074 4.074 21 N -0.969 5.969 22 Si 0.978 3.022 23 H -0.276 1.276 24 H -0.295 1.295 25 H -0.276 1.276 26 C -0.115 4.115 27 C -0.098 4.098 28 C -0.121 4.121 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.176 0.824 35 H 0.192 0.808 36 H 0.417 0.583 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.141 0.859 40 H 0.123 0.877 41 H 0.031 0.969 42 H 0.031 0.969 43 H 0.373 0.627 44 H 0.252 0.748 45 H 0.123 0.877 46 H 0.141 0.859 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.267 -30.375 -17.850 36.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.055 4.055 4 C -0.156 4.156 5 C -0.065 4.065 6 N -0.193 5.193 7 C -0.080 4.080 8 C 0.352 3.648 9 O -0.449 6.449 10 N -0.346 5.346 11 C 0.046 3.954 12 C -0.112 4.112 13 C -0.116 4.116 14 C -0.134 4.134 15 C -0.086 4.086 16 C 0.060 3.940 17 N -0.382 5.382 18 C -0.383 4.383 19 H 0.096 0.904 20 C -0.266 4.266 21 N -0.620 5.620 22 Si 0.806 3.194 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.202 1.202 26 C -0.134 4.134 27 C -0.116 4.116 28 C -0.142 4.142 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.193 0.807 35 H 0.209 0.791 36 H 0.255 0.745 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.159 0.841 40 H 0.141 0.859 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.205 0.795 44 H 0.060 0.940 45 H 0.141 0.859 46 H 0.159 0.841 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.027 -29.703 -17.122 36.014 hybrid contribution 0.213 0.640 0.451 0.811 sum -10.813 -29.063 -16.671 35.207 Atomic orbital electron populations 1.21757 0.93751 1.02991 1.02010 1.20677 0.96760 0.89922 1.04857 1.20676 0.94840 0.97875 0.92080 1.22689 0.97408 0.95573 0.99967 1.23387 0.94143 0.92986 0.95950 1.67517 1.14954 1.38401 0.98452 1.20926 1.01841 0.93309 0.91883 1.18238 0.76877 0.81775 0.87869 1.90765 1.54247 1.68469 1.31400 1.45902 1.65015 1.12982 1.10721 1.20174 1.01425 0.87909 0.85906 1.19765 0.93657 0.94661 1.03110 1.21197 0.95319 0.96731 0.98384 1.21176 0.99722 0.92704 0.99770 1.20179 0.94323 0.95173 0.98963 1.19762 0.97297 0.88167 0.88773 1.42527 1.79638 1.12661 1.03341 1.19648 1.35251 0.90404 0.92968 0.90350 1.25619 1.03287 1.02776 0.94920 1.69834 1.56495 1.38608 0.97019 0.85160 0.78468 0.79614 0.76183 1.20232 1.22135 1.20219 1.21171 0.94903 0.97520 0.99783 1.21193 1.00288 0.91741 0.98404 1.22084 0.97669 0.93938 1.00500 0.91995 0.90589 0.93667 0.88114 0.90174 0.80705 0.79130 0.74547 0.90238 0.90233 0.84120 0.85880 0.95106 0.95115 0.79509 0.93963 0.85887 0.84128 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 71.98 0.71 -0.17 16 2 C -0.09 -0.52 6.11 29.85 0.18 -0.33 16 3 C -0.05 -0.52 5.17 -19.69 -0.10 -0.62 16 4 C -0.14 -1.11 9.82 22.44 0.22 -0.89 16 5 C 0.09 1.08 11.18 84.82 0.95 2.03 16 6 N -0.48 -8.80 9.54 -184.91 -1.76 -10.57 16 7 C 0.06 1.20 6.75 41.91 0.28 1.48 16 8 C 0.57 14.13 7.81 86.88 0.68 14.81 16 9 O -0.57 -17.36 16.32 -3.78 -0.06 -17.42 16 10 N -0.70 -15.38 5.54 -469.39 -2.60 -17.98 16 11 C 0.17 3.79 5.80 85.63 0.50 4.29 16 12 C -0.11 -2.75 5.25 -19.87 -0.10 -2.86 16 13 C -0.10 -2.56 9.70 22.27 0.22 -2.35 16 14 C -0.12 -3.62 9.70 22.27 0.22 -3.40 16 15 C -0.09 -3.02 5.25 -19.87 -0.10 -3.12 16 16 C 0.19 7.74 6.38 85.63 0.55 8.28 16 17 N -0.74 -38.85 5.59 -347.19 -1.94 -40.79 16 18 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 19 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 20 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 21 N -0.97 -60.45 13.06 21.65 0.28 -60.16 16 22 Si 0.98 46.49 29.55 68.60 2.03 48.51 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 26 C -0.12 -3.62 9.70 22.27 0.22 -3.41 16 27 C -0.10 -2.56 9.70 22.27 0.22 -2.35 16 28 C -0.12 -2.10 9.34 22.61 0.21 -1.89 16 29 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.10 0.22 8.10 -2.39 -0.02 0.20 16 33 H 0.08 0.51 8.10 -2.39 -0.02 0.49 16 34 H 0.18 0.15 8.06 -2.91 -0.02 0.12 16 35 H 0.19 0.96 8.06 -2.91 -0.02 0.94 16 36 H 0.42 8.59 7.79 -92.71 -0.72 7.87 16 37 H 0.08 1.80 8.09 -2.39 -0.02 1.78 16 38 H 0.08 1.80 8.08 -2.38 -0.02 1.78 16 39 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 40 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 41 H 0.03 1.26 8.09 -2.39 -0.02 1.25 16 42 H 0.03 1.26 8.09 -2.39 -0.02 1.24 16 43 H 0.37 21.15 7.66 -92.71 -0.71 20.44 16 44 H 0.25 15.21 8.31 -92.71 -0.77 14.43 16 45 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 46 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 47 H 0.14 2.52 7.64 -2.91 -0.02 2.50 16 Total: -1.00 -73.24 404.53 1.64 -71.60 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: -0.44 Total: 34.58 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 6.14 Total: -7.78 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -6.02 Total: -129.50 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.06 Total: -17.42 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -73.24 1.64 -71.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753588954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.216 kcal (2) G-P(sol) polarization free energy of solvation -73.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds