Wall clock time and date at job start Tue Mar 31 2020 22:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29953 * 125.30658 * 2 1 4 4 O 1.41875 * 107.41575 * 180.02562 * 3 2 1 5 5 N 1.41878 * 106.38777 * 359.78222 * 4 3 2 6 6 C 1.29959 * 107.41341 * 0.36958 * 5 4 3 7 7 C 1.50700 * 125.30176 * 179.89667 * 6 5 4 8 8 C 1.50697 * 109.46617 * 269.68601 * 7 6 5 9 9 O 1.21283 * 120.00521 * 359.73030 * 8 7 6 10 10 N 1.34784 * 119.99774 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99893 * 179.72962 * 10 8 7 12 12 C 1.53003 * 109.46708 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.47735 * 54.99583 * 12 11 10 14 14 C 1.53001 * 109.46853 * 294.99623 * 12 11 10 15 15 C 1.53001 * 109.47014 * 174.99880 * 12 11 10 16 16 N 1.46895 * 109.47398 * 184.99735 * 15 12 11 17 17 C 1.46894 * 111.00198 * 180.02562 * 16 15 12 18 18 C 1.50704 * 109.47383 * 180.02562 * 17 16 15 19 19 O 1.21297 * 119.99449 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00218 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99676 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00127 * 359.97438 * 21 20 18 23 23 C 1.38957 * 119.99694 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99779 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99901 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47457 * 90.00004 * 25 23 21 27 27 H 1.48499 * 109.47209 * 209.99928 * 25 23 21 28 28 H 1.48506 * 109.47062 * 329.99644 * 25 23 21 29 29 H 1.09002 * 109.47233 * 270.00226 * 1 2 3 30 30 H 1.09003 * 109.47056 * 29.99915 * 1 2 3 31 31 H 1.09000 * 109.47486 * 149.99834 * 1 2 3 32 32 H 1.09001 * 109.46798 * 149.69492 * 7 6 5 33 33 H 1.08993 * 109.47546 * 29.69044 * 7 6 5 34 34 H 0.97005 * 119.99846 * 359.72750 * 10 8 7 35 35 H 1.08998 * 109.47134 * 299.99552 * 11 10 8 36 36 H 1.08994 * 109.47397 * 59.99843 * 11 10 8 37 37 H 1.08996 * 109.47478 * 60.00396 * 14 12 11 38 38 H 1.09005 * 109.47003 * 180.02562 * 14 12 11 39 39 H 1.08999 * 109.47109 * 299.99958 * 14 12 11 40 40 H 1.09001 * 109.47203 * 304.99879 * 15 12 11 41 41 H 1.08997 * 109.47065 * 64.99569 * 15 12 11 42 42 H 1.00897 * 111.00363 * 56.04157 * 16 15 12 43 43 H 1.09005 * 109.47021 * 299.99748 * 17 16 15 44 44 H 1.09004 * 109.47475 * 59.99745 * 17 16 15 45 45 H 0.96990 * 120.00160 * 359.97438 * 20 18 17 46 46 H 0.96996 * 119.99614 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6247 -0.0006 5 7 3.5710 -0.7936 0.0042 6 6 2.3212 -1.1499 -0.0007 7 6 1.8208 -2.5714 -0.0003 8 6 1.6530 -3.0451 -1.4211 9 8 1.9093 -2.3000 -2.3431 10 7 1.2124 -4.2949 -1.6671 11 6 1.0436 -4.7534 -3.0482 12 6 0.5357 -6.1967 -3.0479 13 1 -0.3761 -6.2609 -2.4540 14 6 1.6026 -7.1126 -2.4448 15 6 0.2408 -6.6339 -4.4841 16 7 -0.3587 -7.9749 -4.4745 17 6 -0.6555 -8.4287 -5.8397 18 6 -1.2685 -9.8045 -5.7897 19 8 -1.4407 -10.3532 -4.7217 20 7 -1.6243 -10.4257 -6.9316 21 6 -2.1825 -11.6771 -6.8860 22 1 -2.3366 -12.1652 -5.9351 23 6 -2.5498 -12.3173 -8.0633 24 7 -3.0844 -13.5170 -8.0196 25 14 -2.2826 -11.4731 -9.7080 26 1 -0.9370 -11.8217 -10.2306 27 1 -3.3195 -11.9246 -10.6704 28 1 -2.3789 -10.0018 -9.5308 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 0.8610 -2.6186 0.5141 33 1 2.5400 -3.2096 0.5130 34 1 1.0071 -4.8907 -0.9297 35 1 0.3219 -4.1148 -3.5574 36 1 2.0011 -4.7049 -3.5668 37 1 1.8127 -6.8012 -1.4216 38 1 1.2409 -8.1409 -2.4450 39 1 2.5144 -7.0485 -3.0387 40 1 -0.4525 -5.9292 -4.9433 41 1 1.1689 -6.6549 -5.0553 42 1 -1.1864 -7.9969 -3.8979 43 1 -1.3549 -7.7366 -6.3087 44 1 0.2667 -8.4623 -6.4200 45 1 -1.4862 -9.9871 -7.7856 46 1 -3.3411 -13.9637 -8.8413 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753635744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:00 Heat of formation + Delta-G solvation = 15.107273 kcal Electronic energy + Delta-G solvation = -27758.185274 eV Core-core repulsion = 23494.223340 eV Total energy + Delta-G solvation = -4263.961934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.03685 -40.22211 -38.61035 -37.44941 -35.20614 -35.02045 -33.98519 -33.91417 -32.60972 -31.67869 -30.16895 -29.26366 -27.63436 -26.79135 -24.88455 -23.39752 -22.84115 -21.59997 -21.04413 -20.48473 -19.39384 -18.39518 -17.83497 -17.51713 -16.69799 -16.35383 -16.17807 -15.90578 -15.76303 -15.17133 -14.96032 -14.81615 -14.59175 -14.44485 -14.16661 -13.98375 -13.71082 -13.67847 -13.39158 -13.24519 -12.98171 -12.71636 -12.64669 -12.24265 -12.19239 -12.12549 -12.07820 -11.85811 -11.45185 -11.31834 -11.23061 -11.14335 -11.11274 -11.03018 -10.62503 -10.45753 -10.00937 -9.60705 -9.59520 -8.64355 -8.23946 -8.19130 -6.34494 -3.86074 0.05659 1.39198 1.99612 2.11685 2.53076 2.71810 2.99661 3.04531 3.12842 3.29761 3.69906 3.89730 3.98858 4.07489 4.16912 4.21597 4.47496 4.54903 4.59944 4.61145 4.72955 4.73175 4.78510 4.92169 5.06467 5.17617 5.18186 5.26794 5.29385 5.42183 5.53476 5.55263 5.68789 5.74576 5.76375 5.82927 5.89689 6.04360 6.27893 6.43019 6.88185 7.00245 7.49122 7.54717 7.59801 8.10849 8.56090 8.91380 9.38927 9.78709 10.78565 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033376 B = 0.001425 C = 0.001410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.712368 B =19644.373554 C =19849.157276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.086 3.914 3 N -0.277 5.277 4 O 0.029 5.971 5 N -0.261 5.261 6 C 0.095 3.905 7 C -0.082 4.082 8 C 0.517 3.483 9 O -0.530 6.530 10 N -0.720 5.720 11 C 0.124 3.876 12 C -0.100 4.100 13 H 0.079 0.921 14 C -0.142 4.142 15 C 0.065 3.935 16 N -0.666 5.666 17 C 0.048 3.952 18 C 0.449 3.551 19 O -0.566 6.566 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.405 0.595 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.030 0.970 41 H 0.075 0.925 42 H 0.350 0.650 43 H 0.045 0.955 44 H 0.087 0.913 45 H 0.371 0.629 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.532 24.815 15.749 30.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.096 4.096 3 N -0.022 5.022 4 O -0.113 6.113 5 N -0.003 5.003 6 C -0.089 4.089 7 C -0.123 4.123 8 C 0.301 3.699 9 O -0.406 6.406 10 N -0.373 5.373 11 C 0.000 4.000 12 C -0.119 4.119 13 H 0.097 0.903 14 C -0.199 4.199 15 C -0.065 4.065 16 N -0.298 5.298 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.448 6.448 20 N -0.229 5.229 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.240 0.760 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.170 0.830 43 H 0.062 0.938 44 H 0.106 0.894 45 H 0.203 0.797 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.314 25.293 15.707 30.912 hybrid contribution -1.254 0.314 -1.416 1.918 sum 7.060 25.607 14.291 30.163 Atomic orbital electron populations 1.20593 0.84152 1.05651 1.04764 1.24524 1.00342 0.88780 0.95991 1.79937 0.89050 1.19559 1.13688 1.93406 1.20211 1.13138 1.84514 1.79916 1.17349 0.91581 1.11481 1.23740 0.90104 0.97635 0.97407 1.20353 1.05369 0.89371 0.97177 1.20043 0.77525 0.82198 0.90152 1.90803 1.49369 1.54509 1.45918 1.45910 1.67583 1.13945 1.09828 1.21461 1.01917 0.94707 0.81926 1.21348 1.00010 0.92855 0.97673 0.90299 1.21776 0.97964 1.01101 0.99052 1.21898 0.99787 0.89554 0.95233 1.60009 1.35369 1.23505 1.10923 1.21701 1.00312 0.95567 0.90880 1.19700 0.84372 0.87613 0.84807 1.90562 1.58044 1.67140 1.29017 1.42207 1.56782 1.17431 1.06518 1.19433 1.36406 0.90637 0.97028 0.86275 1.25041 0.97169 0.95831 0.98065 1.69620 1.41015 1.12769 1.28641 0.86670 0.79079 0.79401 0.84208 1.19579 1.20173 1.19543 0.88320 0.88899 0.88897 0.85101 0.85453 0.76003 0.91185 0.90961 0.93620 0.90272 0.92738 0.95207 0.90677 0.83044 0.93753 0.89441 0.79676 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.28 10.05 36.00 0.36 0.09 16 2 C 0.09 0.63 7.19 -82.38 -0.59 0.04 16 3 N -0.28 -2.88 12.98 33.74 0.44 -2.44 16 4 O 0.03 0.35 13.71 12.02 0.16 0.52 16 5 N -0.26 -2.81 12.98 33.74 0.44 -2.38 16 6 C 0.09 0.72 5.68 -82.38 -0.47 0.26 16 7 C -0.08 -0.29 5.87 -29.04 -0.17 -0.46 16 8 C 0.52 3.53 7.82 -10.98 -0.09 3.45 16 9 O -0.53 -6.25 16.03 5.56 0.09 -6.16 16 10 N -0.72 -3.63 5.28 -60.30 -0.32 -3.95 16 11 C 0.12 0.85 5.06 -4.04 -0.02 0.83 16 12 C -0.10 -0.72 2.57 -90.62 -0.23 -0.95 16 13 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 14 C -0.14 -1.13 8.95 37.16 0.33 -0.80 16 15 C 0.07 0.63 5.07 -3.83 -0.02 0.61 16 16 N -0.67 -8.98 5.58 -115.06 -0.64 -9.63 16 17 C 0.05 0.74 6.17 -4.98 -0.03 0.71 16 18 C 0.45 9.79 7.82 -10.98 -0.09 9.70 16 19 O -0.57 -14.61 15.78 5.54 0.09 -14.52 16 20 N -0.59 -13.68 5.09 -10.96 -0.06 -13.74 16 21 C -0.31 -8.51 10.16 -14.93 -0.15 -8.67 16 22 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.37 13.96 55.50 0.77 -24.59 16 25 Si 0.88 19.03 27.74 -169.99 -4.71 14.31 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 28 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 29 H 0.10 0.06 8.14 -51.93 -0.42 -0.37 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.16 7.77 -51.93 -0.40 -0.25 16 32 H 0.13 -0.07 7.78 -51.93 -0.40 -0.48 16 33 H 0.13 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.40 0.93 7.65 -40.82 -0.31 0.62 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.04 0.27 7.18 -51.93 -0.37 -0.10 16 38 H 0.08 0.84 7.75 -51.93 -0.40 0.44 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.35 4.88 8.43 -39.29 -0.33 4.54 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.37 7.53 5.76 -40.82 -0.24 7.29 16 46 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 395.36 15.07 5.96 5.96 Total: -1.00 -37.74 395.36 -5.71 -43.45 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.67 Total: 7.33 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -1.26 Total: 5.83 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.63 Total: -56.73 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.34 Total: -20.16 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.74 -5.71 -43.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753635744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.555 kcal (2) G-P(sol) polarization free energy of solvation -37.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds