Wall clock time and date at job start Tue Mar 31 2020 22:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29953 * 125.30658 * 2 1 4 4 O 1.41875 * 107.41575 * 180.02562 * 3 2 1 5 5 N 1.41878 * 106.38777 * 359.78222 * 4 3 2 6 6 C 1.29959 * 107.41341 * 0.36958 * 5 4 3 7 7 C 1.50700 * 125.30176 * 179.89667 * 6 5 4 8 8 C 1.50697 * 109.46617 * 269.68601 * 7 6 5 9 9 O 1.21283 * 120.00521 * 359.73030 * 8 7 6 10 10 N 1.34784 * 119.99774 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99893 * 179.72962 * 10 8 7 12 12 C 1.53003 * 109.46708 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.47735 * 54.99583 * 12 11 10 14 14 C 1.53001 * 109.46853 * 294.99623 * 12 11 10 15 15 C 1.53001 * 109.47014 * 174.99880 * 12 11 10 16 16 N 1.46895 * 109.47398 * 184.99735 * 15 12 11 17 17 C 1.46894 * 111.00198 * 180.02562 * 16 15 12 18 18 C 1.50704 * 109.47383 * 180.02562 * 17 16 15 19 19 O 1.21297 * 119.99449 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00218 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99676 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00127 * 359.97438 * 21 20 18 23 23 C 1.38957 * 119.99694 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99779 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99901 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47457 * 90.00004 * 25 23 21 27 27 H 1.48499 * 109.47209 * 209.99928 * 25 23 21 28 28 H 1.48506 * 109.47062 * 329.99644 * 25 23 21 29 29 H 1.09002 * 109.47233 * 270.00226 * 1 2 3 30 30 H 1.09003 * 109.47056 * 29.99915 * 1 2 3 31 31 H 1.09000 * 109.47486 * 149.99834 * 1 2 3 32 32 H 1.09001 * 109.46798 * 149.69492 * 7 6 5 33 33 H 1.08993 * 109.47546 * 29.69044 * 7 6 5 34 34 H 0.97005 * 119.99846 * 359.72750 * 10 8 7 35 35 H 1.08998 * 109.47134 * 299.99552 * 11 10 8 36 36 H 1.08994 * 109.47397 * 59.99843 * 11 10 8 37 37 H 1.08996 * 109.47478 * 60.00396 * 14 12 11 38 38 H 1.09005 * 109.47003 * 180.02562 * 14 12 11 39 39 H 1.08999 * 109.47109 * 299.99958 * 14 12 11 40 40 H 1.09001 * 109.47203 * 304.99879 * 15 12 11 41 41 H 1.08997 * 109.47065 * 64.99569 * 15 12 11 42 42 H 1.00897 * 111.00363 * 56.04157 * 16 15 12 43 43 H 1.09005 * 109.47021 * 299.99748 * 17 16 15 44 44 H 1.09004 * 109.47475 * 59.99745 * 17 16 15 45 45 H 0.96990 * 120.00160 * 359.97438 * 20 18 17 46 46 H 0.96996 * 119.99614 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6247 -0.0006 5 7 3.5710 -0.7936 0.0042 6 6 2.3212 -1.1499 -0.0007 7 6 1.8208 -2.5714 -0.0003 8 6 1.6530 -3.0451 -1.4211 9 8 1.9093 -2.3000 -2.3431 10 7 1.2124 -4.2949 -1.6671 11 6 1.0436 -4.7534 -3.0482 12 6 0.5357 -6.1967 -3.0479 13 1 -0.3761 -6.2609 -2.4540 14 6 1.6026 -7.1126 -2.4448 15 6 0.2408 -6.6339 -4.4841 16 7 -0.3587 -7.9749 -4.4745 17 6 -0.6555 -8.4287 -5.8397 18 6 -1.2685 -9.8045 -5.7897 19 8 -1.4407 -10.3532 -4.7217 20 7 -1.6243 -10.4257 -6.9316 21 6 -2.1825 -11.6771 -6.8860 22 1 -2.3366 -12.1652 -5.9351 23 6 -2.5498 -12.3173 -8.0633 24 7 -3.0844 -13.5170 -8.0196 25 14 -2.2826 -11.4731 -9.7080 26 1 -0.9370 -11.8217 -10.2306 27 1 -3.3195 -11.9246 -10.6704 28 1 -2.3789 -10.0018 -9.5308 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 0.8610 -2.6186 0.5141 33 1 2.5400 -3.2096 0.5130 34 1 1.0071 -4.8907 -0.9297 35 1 0.3219 -4.1148 -3.5574 36 1 2.0011 -4.7049 -3.5668 37 1 1.8127 -6.8012 -1.4216 38 1 1.2409 -8.1409 -2.4450 39 1 2.5144 -7.0485 -3.0387 40 1 -0.4525 -5.9292 -4.9433 41 1 1.1689 -6.6549 -5.0553 42 1 -1.1864 -7.9969 -3.8979 43 1 -1.3549 -7.7366 -6.3087 44 1 0.2667 -8.4623 -6.4200 45 1 -1.4862 -9.9871 -7.7856 46 1 -3.3411 -13.9637 -8.8413 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753635744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:00 Heat of formation + Delta-G solvation = -17.946582 kcal Electronic energy + Delta-G solvation = -27759.618597 eV Core-core repulsion = 23494.223340 eV Total energy + Delta-G solvation = -4265.395257 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.63013 -40.79292 -40.27796 -38.29428 -36.22527 -35.72203 -35.60335 -34.49882 -33.76255 -33.35965 -30.69962 -29.64712 -28.89911 -27.45673 -26.35142 -24.46070 -23.56034 -22.14651 -21.65324 -21.30476 -21.00520 -20.18629 -18.40320 -18.06210 -17.74787 -17.11959 -17.06378 -16.91248 -16.70710 -16.50864 -15.81308 -15.75944 -15.36737 -15.29759 -15.04838 -14.87296 -14.57472 -14.51335 -14.34233 -14.23804 -13.94299 -13.73180 -13.45191 -13.26291 -13.14138 -12.98141 -12.88291 -12.85334 -12.60276 -12.40103 -12.14415 -11.98887 -11.96555 -11.90533 -11.68062 -11.65841 -11.49951 -11.05520 -10.41087 -10.23286 -10.12048 -9.26002 -8.40330 -6.00973 -0.56825 0.87036 1.31055 1.36609 1.45174 1.46344 1.52012 1.97786 1.99814 2.19808 2.23825 2.76528 2.81980 3.16437 3.44610 3.47668 3.78169 3.90679 3.93502 4.03793 4.10774 4.16423 4.20661 4.38201 4.46456 4.51732 4.55697 4.57819 4.63997 4.68329 4.72364 4.81966 4.88629 5.01844 5.09581 5.13965 5.29314 5.45096 5.53919 5.59777 5.81068 5.92398 6.07283 6.44584 6.49547 6.61213 6.89599 7.17299 7.41673 7.98099 8.77234 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033376 B = 0.001425 C = 0.001410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.712368 B =19644.373554 C =19849.157276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.098 3.902 3 N -0.311 5.311 4 O -0.021 6.021 5 N -0.295 5.295 6 C 0.105 3.895 7 C -0.077 4.077 8 C 0.519 3.481 9 O -0.585 6.585 10 N -0.705 5.705 11 C 0.131 3.869 12 C -0.087 4.087 13 H 0.091 0.909 14 C -0.139 4.139 15 C 0.065 3.935 16 N -0.681 5.681 17 C 0.062 3.938 18 C 0.449 3.551 19 O -0.613 6.613 20 N -0.592 5.592 21 C -0.329 4.329 22 H 0.056 0.944 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.964 3.036 26 H -0.259 1.259 27 H -0.276 1.276 28 H -0.231 1.231 29 H 0.131 0.869 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.184 0.816 33 H 0.152 0.848 34 H 0.421 0.579 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.346 0.654 43 H 0.076 0.924 44 H 0.111 0.889 45 H 0.389 0.611 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.872 26.664 15.286 31.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 N -0.060 5.060 4 O -0.154 6.154 5 N -0.041 5.041 6 C -0.079 4.079 7 C -0.117 4.117 8 C 0.304 3.696 9 O -0.466 6.466 10 N -0.358 5.358 11 C 0.007 3.993 12 C -0.106 4.106 13 H 0.109 0.891 14 C -0.196 4.196 15 C -0.064 4.064 16 N -0.314 5.314 17 C -0.071 4.071 18 C 0.237 3.763 19 O -0.497 6.497 20 N -0.234 5.234 21 C -0.458 4.458 22 H 0.074 0.926 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.784 3.216 26 H -0.183 1.183 27 H -0.201 1.201 28 H -0.154 1.154 29 H 0.149 0.851 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.201 0.799 33 H 0.170 0.830 34 H 0.260 0.740 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.165 0.835 43 H 0.094 0.906 44 H 0.129 0.871 45 H 0.225 0.775 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.704 27.174 15.283 32.115 hybrid contribution -1.134 -0.379 -1.125 1.641 sum 6.570 26.796 14.158 31.010 Atomic orbital electron populations 1.20909 0.80689 1.06595 1.07043 1.25331 1.02196 0.87940 0.93055 1.79898 0.88710 1.21122 1.16315 1.93366 1.21749 1.14133 1.86129 1.79859 1.19445 0.91075 1.13717 1.24457 0.89243 0.99581 0.94648 1.20653 1.08605 0.86851 0.95558 1.20492 0.76362 0.81950 0.90785 1.90799 1.51874 1.56040 1.47836 1.45757 1.66592 1.13726 1.09728 1.21257 1.01081 0.94162 0.82830 1.21214 1.00206 0.92723 0.96466 0.89100 1.21734 0.97692 0.99670 1.00553 1.21985 0.99771 0.87735 0.96924 1.60001 1.35335 1.26185 1.09855 1.21614 1.01393 0.91380 0.92670 1.21018 0.82278 0.89522 0.83507 1.90540 1.59331 1.68991 1.30859 1.42050 1.57214 1.16121 1.08029 1.19019 1.38608 0.92974 0.95224 0.92564 1.26094 0.95907 0.96340 1.02942 1.69802 1.42297 1.14998 1.30400 0.85379 0.79225 0.80172 0.76830 1.18348 1.20117 1.15384 0.85063 0.89035 0.86816 0.79863 0.83028 0.74020 0.91345 0.92380 0.91235 0.93063 0.93501 0.93694 0.90542 0.83510 0.90621 0.87137 0.77522 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.24 10.05 71.23 0.72 0.48 16 2 C 0.10 1.30 7.19 43.49 0.31 1.61 16 3 N -0.31 -6.64 12.98 -47.16 -0.61 -7.25 16 4 O -0.02 -0.55 13.71 70.17 0.96 0.42 16 5 N -0.30 -6.47 12.98 -47.15 -0.61 -7.08 16 6 C 0.11 1.43 5.68 43.49 0.25 1.68 16 7 C -0.08 -0.25 5.87 29.10 0.17 -0.08 16 8 C 0.52 5.54 7.82 87.65 0.69 6.22 16 9 O -0.59 -12.98 16.03 -3.04 -0.05 -13.03 16 10 N -0.71 -4.59 5.28 -463.06 -2.45 -7.04 16 11 C 0.13 1.43 5.06 86.38 0.44 1.87 16 12 C -0.09 -1.01 2.57 -10.79 -0.03 -1.04 16 13 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 14 C -0.14 -1.93 8.95 71.98 0.64 -1.28 16 15 C 0.07 1.05 5.07 86.30 0.44 1.49 16 16 N -0.68 -16.92 5.58 -517.94 -2.89 -19.81 16 17 C 0.06 1.72 6.17 85.56 0.53 2.24 16 18 C 0.45 19.30 7.82 87.66 0.69 19.99 16 19 O -0.61 -32.53 15.78 -3.08 -0.05 -32.58 16 20 N -0.59 -27.08 5.09 -306.98 -1.56 -28.64 16 21 C -0.33 -18.92 10.16 84.04 0.85 -18.07 16 22 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 24 N -0.93 -55.62 13.96 21.67 0.30 -55.32 16 25 Si 0.96 38.04 27.74 68.60 1.90 39.94 16 26 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 27 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 28 H -0.23 -7.57 6.52 99.48 0.65 -6.92 16 29 H 0.13 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.11 -0.14 7.77 -2.39 -0.02 -0.16 16 32 H 0.18 -1.34 7.78 -2.39 -0.02 -1.36 16 33 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.42 0.01 7.65 -92.70 -0.71 -0.69 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.60 7.18 -2.39 -0.02 0.59 16 38 H 0.05 1.03 7.75 -2.38 -0.02 1.01 16 39 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.35 9.07 8.43 -89.70 -0.76 8.32 16 43 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 44 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 45 H 0.39 14.67 5.76 -92.72 -0.53 14.14 16 46 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -92.73 395.36 0.09 -92.65 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -1.02 Total: 22.94 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 6.16 Total: 14.81 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -7.82 Total: -125.14 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: 0.86 Total: -45.19 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 1.90 Total: 39.94 kcal Total: -92.73 0.09 -92.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753635744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.699 kcal (2) G-P(sol) polarization free energy of solvation -92.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds