Wall clock time and date at job start Tue Mar 31 2020 22:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29950 * 125.30055 * 2 1 4 4 O 1.41872 * 107.41331 * 179.97438 * 3 2 1 5 5 N 1.41871 * 106.38568 * 359.77789 * 4 3 2 6 6 C 1.29949 * 107.41578 * 0.37047 * 5 4 3 7 7 C 1.50701 * 125.30387 * 179.89182 * 6 5 4 8 8 C 1.50703 * 109.47064 * 269.69195 * 7 6 5 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47069 * 304.99442 * 12 11 10 14 14 C 1.52993 * 109.47345 * 65.00000 * 12 11 10 15 15 C 1.53006 * 109.46846 * 185.00008 * 12 11 10 16 16 N 1.46898 * 109.46975 * 174.99964 * 15 12 11 17 17 C 1.46895 * 111.00057 * 179.97438 * 16 15 12 18 18 C 1.50701 * 109.47427 * 179.97438 * 17 16 15 19 19 O 1.21288 * 119.99653 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00069 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00011 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00001 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00337 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99649 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00386 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46733 * 60.00051 * 25 23 21 27 27 H 1.48497 * 109.47551 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47324 * 300.00497 * 25 23 21 29 29 H 1.09001 * 109.47303 * 269.99843 * 1 2 3 30 30 H 1.09004 * 109.47356 * 30.00381 * 1 2 3 31 31 H 1.09002 * 109.46771 * 149.99801 * 1 2 3 32 32 H 1.09002 * 109.47060 * 149.69231 * 7 6 5 33 33 H 1.09001 * 109.47380 * 29.69144 * 7 6 5 34 34 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 36 36 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 37 37 H 1.08993 * 109.47639 * 59.99724 * 14 12 11 38 38 H 1.09004 * 109.47135 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.47179 * 299.99584 * 14 12 11 40 40 H 1.09004 * 109.46746 * 294.99703 * 15 12 11 41 41 H 1.08998 * 109.47205 * 54.99872 * 15 12 11 42 42 H 1.00906 * 110.99977 * 303.94881 * 16 15 12 43 43 H 1.09008 * 109.47339 * 299.99885 * 17 16 15 44 44 H 1.09004 * 109.47187 * 59.99646 * 17 16 15 45 45 H 0.97001 * 120.00115 * 0.02562 * 20 18 17 46 46 H 0.97007 * 120.00193 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6081 0.6248 0.0006 5 7 3.5710 -0.7934 0.0062 6 6 2.3213 -1.1497 0.0007 7 6 1.8210 -2.5713 0.0014 8 6 1.6543 -3.0459 -1.4192 9 8 1.9164 -2.3031 -2.3414 10 7 1.2139 -4.2958 -1.6649 11 6 1.0524 -4.7573 -3.0459 12 6 0.5432 -6.2000 -3.0451 13 1 1.2157 -6.8224 -2.4548 14 6 -0.8598 -6.2454 -2.4365 15 6 0.4931 -6.7239 -4.4818 16 7 0.1193 -8.1445 -4.4723 17 6 0.0605 -8.6826 -5.8378 18 6 -0.3244 -10.1388 -5.7879 19 8 -0.5300 -10.6754 -4.7198 20 7 -0.4412 -10.8445 -6.9302 21 6 -0.7918 -12.1691 -6.8848 22 1 -0.9749 -12.6470 -5.9337 23 6 -0.9117 -12.8969 -8.0624 24 7 -0.6885 -12.3156 -9.2195 25 14 -1.3888 -14.7018 -8.0005 26 1 -2.7195 -14.8402 -7.3562 27 1 -1.4477 -15.2460 -9.3809 28 1 -0.3779 -15.4544 -7.2149 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 0.8608 -2.6183 0.5152 33 1 2.5399 -3.2093 0.5156 34 1 1.0047 -4.8899 -0.9273 35 1 2.0129 -4.7108 -3.5592 36 1 0.3341 -4.1191 -3.5605 37 1 -1.5322 -5.6231 -3.0268 38 1 -1.2227 -7.2732 -2.4364 39 1 -0.8241 -5.8722 -1.4130 40 1 -0.2455 -6.1577 -5.0494 41 1 1.4731 -6.6092 -4.9448 42 1 0.7528 -8.6812 -3.8988 43 1 -0.6813 -8.1300 -6.4146 44 1 1.0374 -8.5814 -6.3107 45 1 -0.2771 -10.4153 -7.7844 46 1 -0.7718 -12.8237 -10.0417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753635745.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:03 Heat of formation + Delta-G solvation = 7.956104 kcal Electronic energy + Delta-G solvation = -27704.356881 eV Core-core repulsion = 23440.084849 eV Total energy + Delta-G solvation = -4264.272032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.01837 -40.19058 -38.42905 -37.36165 -35.14845 -34.98049 -33.93937 -33.87863 -32.53561 -31.22898 -30.13663 -29.24183 -27.46811 -26.73376 -24.88882 -23.45539 -22.84614 -21.57499 -21.00701 -20.44136 -19.23221 -17.98176 -17.77290 -17.50701 -16.57543 -16.29673 -16.23291 -15.98740 -15.62661 -14.98284 -14.77326 -14.70945 -14.64916 -14.41231 -14.11364 -13.96404 -13.70629 -13.56693 -13.49477 -13.36062 -12.93805 -12.65810 -12.44150 -12.22233 -12.14814 -11.99644 -11.73078 -11.54835 -11.43013 -11.22384 -11.17690 -11.09333 -11.02023 -10.97497 -10.46506 -10.42477 -10.23732 -9.55929 -9.52613 -8.50478 -8.10811 -7.98789 -6.44070 -3.85180 0.07676 1.41316 2.02652 2.13820 2.55537 2.74617 3.18092 3.24188 3.28250 3.31908 3.87819 3.92175 4.03594 4.19703 4.23719 4.24733 4.49528 4.59757 4.63548 4.69111 4.75118 4.80551 4.85982 5.08534 5.11991 5.22716 5.23130 5.28892 5.37087 5.46632 5.59161 5.67601 5.77433 5.81170 5.86881 5.94348 6.08527 6.23239 6.30663 6.45049 6.91538 7.13753 7.52451 7.58956 7.63019 8.03296 8.58392 9.15082 9.51531 10.02725 10.73482 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.042548 B = 0.001358 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.915125 B =20610.432175 C =20753.337865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.086 3.914 3 N -0.277 5.277 4 O 0.029 5.971 5 N -0.261 5.261 6 C 0.095 3.905 7 C -0.082 4.082 8 C 0.517 3.483 9 O -0.530 6.530 10 N -0.720 5.720 11 C 0.124 3.876 12 C -0.100 4.100 13 H 0.078 0.922 14 C -0.140 4.140 15 C 0.065 3.935 16 N -0.666 5.666 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.585 6.585 20 N -0.563 5.563 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.404 0.596 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.029 0.971 42 H 0.349 0.651 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.550 21.555 18.229 28.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.096 4.096 3 N -0.022 5.022 4 O -0.113 6.113 5 N -0.003 5.003 6 C -0.089 4.089 7 C -0.123 4.123 8 C 0.300 3.700 9 O -0.406 6.406 10 N -0.372 5.372 11 C 0.000 4.000 12 C -0.119 4.119 13 H 0.096 0.904 14 C -0.198 4.198 15 C -0.065 4.065 16 N -0.298 5.298 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.469 6.469 20 N -0.199 5.199 21 C -0.431 4.431 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.240 0.760 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.168 0.832 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.226 0.774 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.120 22.605 18.090 29.030 hybrid contribution 0.223 -1.419 -0.601 1.557 sum 2.343 21.186 17.489 27.572 Atomic orbital electron populations 1.20597 0.84141 1.05675 1.04749 1.24524 1.00347 0.88776 0.95980 1.79934 0.89047 1.19565 1.13700 1.93404 1.20218 1.13142 1.84517 1.79911 1.17361 0.91579 1.11492 1.23737 0.90101 0.97644 0.97396 1.20356 1.05348 0.89357 0.97208 1.20039 0.77555 0.82219 0.90138 1.90803 1.49257 1.54622 1.45895 1.45911 1.67498 1.13987 1.09848 1.21468 1.01669 0.95008 0.81868 1.21350 0.98716 0.94079 0.97772 0.90394 1.21765 0.95163 1.03930 0.98915 1.21897 0.99132 0.90416 0.95059 1.60037 1.57076 1.01338 1.11342 1.21667 1.00422 0.95645 0.90457 1.19796 0.84960 0.87600 0.85083 1.90514 1.55639 1.71377 1.29363 1.41860 1.60459 1.10589 1.07033 1.19656 1.43433 0.85275 0.94733 0.87965 1.25263 0.97445 1.00528 0.94634 1.69604 1.49329 1.37622 0.97689 0.85912 0.79290 0.81876 0.77105 1.19871 1.20967 1.19926 0.88336 0.88899 0.88863 0.85111 0.85481 0.76036 0.91237 0.90879 0.92732 0.90325 0.93674 0.90698 0.95253 0.83225 0.89578 0.93872 0.77446 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.29 10.05 36.01 0.36 0.07 16 2 C 0.09 0.65 7.19 -82.38 -0.59 0.06 16 3 N -0.28 -2.93 12.98 33.74 0.44 -2.49 16 4 O 0.03 0.36 13.71 12.03 0.16 0.52 16 5 N -0.26 -2.87 12.98 33.74 0.44 -2.43 16 6 C 0.09 0.74 5.68 -82.39 -0.47 0.28 16 7 C -0.08 -0.31 5.87 -29.03 -0.17 -0.48 16 8 C 0.52 3.68 7.82 -10.98 -0.09 3.60 16 9 O -0.53 -6.41 16.03 5.56 0.09 -6.32 16 10 N -0.72 -3.88 5.28 -60.29 -0.32 -4.20 16 11 C 0.12 0.91 5.06 -4.04 -0.02 0.89 16 12 C -0.10 -0.78 2.57 -90.62 -0.23 -1.01 16 13 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 14 C -0.14 -1.12 8.95 37.15 0.33 -0.78 16 15 C 0.07 0.68 5.07 -3.82 -0.02 0.66 16 16 N -0.67 -9.59 5.58 -115.05 -0.64 -10.23 16 17 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 18 C 0.44 10.07 7.82 -10.98 -0.09 9.98 16 19 O -0.58 -15.37 15.78 5.55 0.09 -15.28 16 20 N -0.56 -14.00 5.29 -10.96 -0.06 -14.06 16 21 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 22 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 25 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 29 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.17 7.78 -51.93 -0.40 -0.23 16 32 H 0.13 -0.05 7.78 -51.93 -0.40 -0.45 16 33 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.40 1.06 7.66 -40.82 -0.31 0.75 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.84 7.75 -51.93 -0.40 0.44 16 39 H 0.04 0.25 7.18 -51.93 -0.37 -0.12 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.35 5.20 8.43 -39.29 -0.33 4.87 16 43 H 0.09 1.33 8.14 -51.92 -0.42 0.91 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.39 9.34 7.90 -40.82 -0.32 9.01 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 398.49 15.07 6.01 6.01 Total: -1.00 -36.48 398.49 -6.06 -42.54 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.71 Total: 7.58 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -1.25 Total: 6.15 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.58 Total: -56.92 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: 0.34 Total: -21.09 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.48 -6.06 -42.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753635745.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.493 kcal (2) G-P(sol) polarization free energy of solvation -36.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds