Wall clock time and date at job start Tue Mar 31 2020 22:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29950 * 125.30055 * 2 1 4 4 O 1.41872 * 107.41331 * 179.97438 * 3 2 1 5 5 N 1.41871 * 106.38568 * 359.77789 * 4 3 2 6 6 C 1.29949 * 107.41578 * 0.37047 * 5 4 3 7 7 C 1.50701 * 125.30387 * 179.89182 * 6 5 4 8 8 C 1.50703 * 109.47064 * 269.69195 * 7 6 5 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47069 * 304.99442 * 12 11 10 14 14 C 1.52993 * 109.47345 * 65.00000 * 12 11 10 15 15 C 1.53006 * 109.46846 * 185.00008 * 12 11 10 16 16 N 1.46898 * 109.46975 * 174.99964 * 15 12 11 17 17 C 1.46895 * 111.00057 * 179.97438 * 16 15 12 18 18 C 1.50701 * 109.47427 * 179.97438 * 17 16 15 19 19 O 1.21288 * 119.99653 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00069 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00011 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00001 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00337 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99649 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00386 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46733 * 60.00051 * 25 23 21 27 27 H 1.48497 * 109.47551 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47324 * 300.00497 * 25 23 21 29 29 H 1.09001 * 109.47303 * 269.99843 * 1 2 3 30 30 H 1.09004 * 109.47356 * 30.00381 * 1 2 3 31 31 H 1.09002 * 109.46771 * 149.99801 * 1 2 3 32 32 H 1.09002 * 109.47060 * 149.69231 * 7 6 5 33 33 H 1.09001 * 109.47380 * 29.69144 * 7 6 5 34 34 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 36 36 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 37 37 H 1.08993 * 109.47639 * 59.99724 * 14 12 11 38 38 H 1.09004 * 109.47135 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.47179 * 299.99584 * 14 12 11 40 40 H 1.09004 * 109.46746 * 294.99703 * 15 12 11 41 41 H 1.08998 * 109.47205 * 54.99872 * 15 12 11 42 42 H 1.00906 * 110.99977 * 303.94881 * 16 15 12 43 43 H 1.09008 * 109.47339 * 299.99885 * 17 16 15 44 44 H 1.09004 * 109.47187 * 59.99646 * 17 16 15 45 45 H 0.97001 * 120.00115 * 0.02562 * 20 18 17 46 46 H 0.97007 * 120.00193 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6081 0.6248 0.0006 5 7 3.5710 -0.7934 0.0062 6 6 2.3213 -1.1497 0.0007 7 6 1.8210 -2.5713 0.0014 8 6 1.6543 -3.0459 -1.4192 9 8 1.9164 -2.3031 -2.3414 10 7 1.2139 -4.2958 -1.6649 11 6 1.0524 -4.7573 -3.0459 12 6 0.5432 -6.2000 -3.0451 13 1 1.2157 -6.8224 -2.4548 14 6 -0.8598 -6.2454 -2.4365 15 6 0.4931 -6.7239 -4.4818 16 7 0.1193 -8.1445 -4.4723 17 6 0.0605 -8.6826 -5.8378 18 6 -0.3244 -10.1388 -5.7879 19 8 -0.5300 -10.6754 -4.7198 20 7 -0.4412 -10.8445 -6.9302 21 6 -0.7918 -12.1691 -6.8848 22 1 -0.9749 -12.6470 -5.9337 23 6 -0.9117 -12.8969 -8.0624 24 7 -0.6885 -12.3156 -9.2195 25 14 -1.3888 -14.7018 -8.0005 26 1 -2.7195 -14.8402 -7.3562 27 1 -1.4477 -15.2460 -9.3809 28 1 -0.3779 -15.4544 -7.2149 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 0.8608 -2.6183 0.5152 33 1 2.5399 -3.2093 0.5156 34 1 1.0047 -4.8899 -0.9273 35 1 2.0129 -4.7108 -3.5592 36 1 0.3341 -4.1191 -3.5605 37 1 -1.5322 -5.6231 -3.0268 38 1 -1.2227 -7.2732 -2.4364 39 1 -0.8241 -5.8722 -1.4130 40 1 -0.2455 -6.1577 -5.0494 41 1 1.4731 -6.6092 -4.9448 42 1 0.7528 -8.6812 -3.8988 43 1 -0.6813 -8.1300 -6.4146 44 1 1.0374 -8.5814 -6.3107 45 1 -0.2771 -10.4153 -7.7844 46 1 -0.7718 -12.8237 -10.0417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753635745.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:03 Heat of formation + Delta-G solvation = -22.696669 kcal Electronic energy + Delta-G solvation = -27705.686085 eV Core-core repulsion = 23440.084849 eV Total energy + Delta-G solvation = -4265.601236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.63033 -40.79361 -40.14083 -38.28212 -36.20489 -35.69923 -35.59415 -34.49660 -33.47579 -33.14610 -30.69206 -29.64048 -28.76917 -27.43561 -26.46219 -24.54855 -23.57099 -22.14739 -21.65640 -21.23172 -20.82128 -19.87833 -18.41459 -18.07472 -17.75733 -17.04486 -16.98295 -16.90954 -16.71766 -16.44731 -15.96762 -15.67068 -15.34971 -15.28148 -15.20689 -15.03908 -14.53583 -14.40989 -14.23282 -13.90523 -13.87127 -13.53865 -13.38261 -13.22960 -13.10093 -12.95397 -12.87955 -12.81642 -12.60918 -12.42043 -12.14365 -12.12101 -11.96442 -11.90365 -11.67698 -11.65598 -11.48411 -11.05544 -10.32484 -10.12504 -10.00421 -9.27868 -8.45406 -5.94320 -0.56601 0.87263 1.41081 1.43092 1.46542 1.52073 1.53910 1.99928 2.07090 2.19407 2.30986 2.80048 2.97784 3.22145 3.46822 3.55516 3.78148 3.91311 3.93353 4.03768 4.11798 4.16992 4.34505 4.38626 4.49852 4.52027 4.54614 4.60224 4.64705 4.67120 4.72786 4.81333 4.90512 5.01819 5.10233 5.16557 5.29275 5.41768 5.45273 5.63232 5.81319 5.90168 6.11579 6.43940 6.49584 6.61217 7.13649 7.17559 7.57841 8.12709 8.71647 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.042548 B = 0.001358 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.915125 B =20610.432175 C =20753.337865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.098 3.902 3 N -0.311 5.311 4 O -0.021 6.021 5 N -0.296 5.296 6 C 0.105 3.895 7 C -0.076 4.076 8 C 0.518 3.482 9 O -0.586 6.586 10 N -0.704 5.704 11 C 0.132 3.868 12 C -0.087 4.087 13 H 0.085 0.915 14 C -0.136 4.136 15 C 0.064 3.936 16 N -0.675 5.675 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.574 5.574 21 C -0.336 4.336 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.272 1.272 28 H -0.271 1.271 29 H 0.132 0.868 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.185 0.815 33 H 0.152 0.848 34 H 0.422 0.578 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.037 0.963 42 H 0.345 0.655 43 H 0.102 0.898 44 H 0.063 0.937 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.214 21.138 19.414 28.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 N -0.060 5.060 4 O -0.154 6.154 5 N -0.041 5.041 6 C -0.079 4.079 7 C -0.116 4.116 8 C 0.304 3.696 9 O -0.466 6.466 10 N -0.357 5.357 11 C 0.007 3.993 12 C -0.106 4.106 13 H 0.103 0.897 14 C -0.194 4.194 15 C -0.066 4.066 16 N -0.307 5.307 17 C -0.068 4.068 18 C 0.226 3.774 19 O -0.508 6.508 20 N -0.212 5.212 21 C -0.465 4.465 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.150 0.850 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.202 0.798 33 H 0.170 0.830 34 H 0.260 0.740 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.163 0.837 43 H 0.120 0.880 44 H 0.081 0.919 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.823 22.216 19.295 29.437 hybrid contribution 0.551 -1.307 -0.942 1.703 sum 1.374 20.908 18.354 27.855 Atomic orbital electron populations 1.20916 0.80656 1.06606 1.07063 1.25335 1.02212 0.87927 0.93035 1.79896 0.88693 1.21124 1.16329 1.93364 1.21775 1.14128 1.86135 1.79853 1.19466 0.91084 1.13723 1.24455 0.89243 0.99597 0.94645 1.20654 1.08646 0.86838 0.95471 1.20511 0.76348 0.81934 0.90826 1.90800 1.51764 1.56170 1.47861 1.45741 1.66550 1.13802 1.09639 1.21242 1.00775 0.94387 0.82901 1.21206 0.98998 0.94294 0.96132 0.89669 1.21718 0.94761 1.02156 1.00748 1.22003 0.99493 0.87940 0.97130 1.60040 1.57662 1.03191 1.09838 1.21522 1.01710 0.91205 0.92368 1.20886 0.82881 0.89836 0.83837 1.90482 1.56773 1.72950 1.30604 1.41946 1.61204 1.10157 1.07850 1.19651 1.45560 0.86909 0.94388 0.90182 1.26036 0.96810 1.04396 0.93997 1.69669 1.49348 1.39051 0.98095 0.84988 0.78849 0.76914 0.77593 1.19661 1.19636 1.19668 0.85013 0.89048 0.86801 0.79785 0.83005 0.73978 0.92527 0.91407 0.93026 0.93182 0.90698 0.90403 0.94529 0.83678 0.87969 0.91866 0.77037 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.27 10.05 71.24 0.72 0.44 16 2 C 0.10 1.34 7.19 43.49 0.31 1.65 16 3 N -0.31 -6.77 12.98 -47.16 -0.61 -7.39 16 4 O -0.02 -0.56 13.71 70.19 0.96 0.40 16 5 N -0.30 -6.63 12.98 -47.16 -0.61 -7.24 16 6 C 0.11 1.48 5.68 43.49 0.25 1.73 16 7 C -0.08 -0.28 5.87 29.10 0.17 -0.11 16 8 C 0.52 5.93 7.82 87.66 0.69 6.61 16 9 O -0.59 -13.54 16.03 -3.02 -0.05 -13.59 16 10 N -0.70 -5.19 5.28 -463.05 -2.45 -7.64 16 11 C 0.13 1.63 5.06 86.38 0.44 2.07 16 12 C -0.09 -1.15 2.57 -10.79 -0.03 -1.18 16 13 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 14 C -0.14 -1.82 8.95 71.98 0.64 -1.18 16 15 C 0.06 1.20 5.07 86.31 0.44 1.64 16 16 N -0.68 -18.61 5.58 -517.92 -2.89 -21.50 16 17 C 0.06 2.07 6.17 85.56 0.53 2.60 16 18 C 0.44 20.13 7.82 87.66 0.69 20.81 16 19 O -0.62 -33.19 15.78 -3.05 -0.05 -33.24 16 20 N -0.57 -28.91 5.29 -306.98 -1.62 -30.54 16 21 C -0.34 -18.78 9.68 84.04 0.81 -17.96 16 22 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 24 N -0.92 -49.20 13.05 21.66 0.28 -48.91 16 25 Si 0.99 42.24 29.55 68.60 2.03 44.27 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 29 H 0.13 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.11 -0.09 7.78 -2.39 -0.02 -0.11 16 32 H 0.18 -1.29 7.78 -2.39 -0.02 -1.31 16 33 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.42 0.27 7.66 -92.71 -0.71 -0.44 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.05 0.99 7.75 -2.38 -0.02 0.97 16 39 H 0.07 0.53 7.18 -2.39 -0.02 0.52 16 40 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.34 9.95 8.43 -89.69 -0.76 9.20 16 43 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 44 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 45 H 0.40 18.98 7.90 -92.71 -0.73 18.24 16 46 H 0.28 13.92 8.31 -92.70 -0.77 13.15 16 Total: -1.00 -84.84 398.49 -0.04 -84.88 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -1.16 Total: 23.55 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 6.12 Total: 16.93 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -7.90 Total: -123.21 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: 0.87 Total: -46.43 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -84.84 -0.04 -84.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753635745.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.183 kcal (2) G-P(sol) polarization free energy of solvation -84.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds