Wall clock time and date at job start Tue Mar 31 2020 22:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35366 * 127.24485 * 2 1 4 4 N 1.35034 * 107.22274 * 180.14340 * 3 2 1 5 5 C 1.46506 * 124.88249 * 179.87379 * 4 3 2 6 6 N 1.28466 * 110.23334 * 359.60036 * 4 3 2 7 7 C 1.31802 * 110.07228 * 0.25204 * 6 4 3 8 8 C 1.47712 * 126.51667 * 180.02562 * 7 6 4 9 9 O 1.21571 * 119.99952 * 179.97438 * 8 7 6 10 10 N 1.34782 * 120.00158 * 359.97024 * 8 7 6 11 11 C 1.46494 * 120.00066 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47238 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.46927 * 304.99945 * 12 11 10 14 14 O 1.42894 * 109.47145 * 64.99831 * 12 11 10 15 15 C 1.52994 * 109.47142 * 185.00040 * 12 11 10 16 16 N 1.46902 * 109.47206 * 180.02562 * 15 12 11 17 17 C 1.46898 * 111.00085 * 179.97438 * 16 15 12 18 18 C 1.50708 * 109.46995 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00038 * 359.97438 * 18 17 16 20 20 N 1.34769 * 119.99876 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99851 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99757 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00085 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00032 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00022 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47344 * 89.99622 * 25 23 21 27 27 H 1.48507 * 109.47124 * 209.99934 * 25 23 21 28 28 H 1.48507 * 109.46966 * 329.99644 * 25 23 21 29 29 H 1.09008 * 109.46822 * 270.27773 * 1 2 3 30 30 H 1.08992 * 109.47608 * 30.28324 * 1 2 3 31 31 H 1.09008 * 109.47013 * 150.28850 * 1 2 3 32 32 H 1.07998 * 126.38568 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.46871 * 269.71642 * 5 4 3 34 34 H 1.08994 * 109.46947 * 29.71350 * 5 4 3 35 35 H 1.08997 * 109.47271 * 149.71867 * 5 4 3 36 36 H 0.97002 * 119.99620 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.47232 * 299.99787 * 11 10 8 38 38 H 1.08998 * 109.47731 * 59.99584 * 11 10 8 39 39 H 0.96694 * 114.00403 * 60.00080 * 14 12 11 40 40 H 1.09008 * 109.46945 * 299.99484 * 15 12 11 41 41 H 1.08997 * 109.47763 * 60.00030 * 15 12 11 42 42 H 1.00901 * 110.99885 * 56.03859 * 16 15 12 43 43 H 1.08993 * 109.47107 * 299.99155 * 17 16 15 44 44 H 1.08997 * 109.47547 * 59.99912 * 17 16 15 45 45 H 0.97003 * 120.00245 * 359.97438 * 20 18 17 46 46 H 0.97008 * 119.99844 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6153 -0.0032 5 6 4.7937 1.4576 -0.0070 6 7 3.5998 -0.6694 0.0032 7 6 2.3635 -1.1263 0.0055 8 6 1.9506 -2.5445 0.0131 9 8 0.7698 -2.8338 0.0150 10 7 2.8829 -3.5179 0.0180 11 6 2.4734 -4.9244 0.0250 12 6 3.7159 -5.8173 0.0301 13 1 4.3552 -5.5550 -0.8128 14 8 4.4344 -5.6267 1.2504 15 6 3.2914 -7.2824 -0.0883 16 7 4.4842 -8.1398 -0.0828 17 6 4.1144 -9.5571 -0.1946 18 6 5.3612 -10.4037 -0.1863 19 8 6.4506 -9.8781 -0.0965 20 7 5.2656 -11.7449 -0.2785 21 6 6.3998 -12.5150 -0.2715 22 1 7.3699 -12.0469 -0.1924 23 6 6.3012 -13.8978 -0.3660 24 7 7.3884 -14.6360 -0.3588 25 14 4.6234 -14.7073 -0.5036 26 1 4.2495 -14.8314 -1.9354 27 1 4.6729 -16.0571 0.1139 28 1 3.6139 -13.8772 0.2016 29 1 -0.3633 0.0050 1.0277 30 1 -0.3634 0.8873 -0.5182 31 1 -0.3633 -0.8926 -0.5094 32 1 2.0219 2.1138 0.0004 33 1 5.0911 1.6617 -1.0356 34 1 4.5792 2.3970 0.5024 35 1 5.6026 0.9407 0.5093 36 1 3.8251 -3.2870 0.0168 37 1 1.8785 -5.1252 0.9160 38 1 1.8784 -5.1341 -0.8638 39 1 3.9256 -5.8413 2.0442 40 1 2.6520 -7.5447 0.7547 41 1 2.7433 -7.4279 -1.0191 42 1 5.0434 -7.9762 0.7410 43 1 3.4807 -9.8347 0.6476 44 1 3.5722 -9.7187 -1.1262 45 1 4.3943 -12.1653 -0.3499 46 1 7.3196 -15.6014 -0.4252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753911553.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:33 Heat of formation + Delta-G solvation = -36.574784 kcal Electronic energy + Delta-G solvation = -27924.219680 eV Core-core repulsion = 23658.016644 eV Total energy + Delta-G solvation = -4266.203036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.06241 -39.77491 -38.62270 -37.93184 -35.01930 -34.53599 -34.30396 -33.82489 -32.33614 -31.65235 -30.45855 -28.69501 -27.67991 -26.65457 -24.88079 -23.38850 -22.48698 -21.92168 -21.07154 -20.24967 -19.37345 -18.37390 -18.14635 -17.07024 -16.81757 -16.74188 -16.47677 -15.82203 -15.60144 -15.40104 -14.97023 -14.68596 -14.63282 -14.19068 -13.98287 -13.76062 -13.64610 -13.47752 -13.34192 -13.04946 -13.03104 -12.89607 -12.78397 -12.50618 -12.41910 -12.07283 -11.87822 -11.70659 -11.21785 -11.16247 -11.10560 -10.58694 -10.49043 -10.16511 -9.95828 -9.67891 -9.55852 -9.35343 -9.09091 -8.57722 -8.18901 -8.14048 -6.29651 -3.81083 1.23073 1.70831 2.01776 2.85102 3.03418 3.08080 3.14419 3.16061 3.75443 3.87722 3.96511 4.11480 4.22198 4.32434 4.44981 4.52528 4.63009 4.77680 4.81286 4.85264 4.87797 4.92546 5.01362 5.16348 5.20375 5.25505 5.39656 5.47994 5.52937 5.61237 5.64432 5.79889 5.81710 5.87825 5.94717 6.10119 6.14588 6.34801 7.04296 7.17676 7.40860 7.53625 7.59068 7.61508 7.96175 8.16148 8.61372 8.96586 9.43922 9.84440 10.83487 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028799 B = 0.001551 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.034807 B =18045.932802 C =18864.973213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.145 4.145 3 C -0.025 4.025 4 N -0.282 5.282 5 C 0.086 3.914 6 N -0.257 5.257 7 C -0.019 4.019 8 C 0.605 3.395 9 O -0.533 6.533 10 N -0.711 5.711 11 C 0.089 3.911 12 C 0.098 3.902 13 H 0.117 0.883 14 O -0.552 6.552 15 C 0.031 3.969 16 N -0.663 5.663 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.563 6.563 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.182 0.818 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.412 0.588 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.373 0.627 40 H 0.033 0.967 41 H 0.084 0.916 42 H 0.358 0.642 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.370 0.630 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.551 33.024 1.655 36.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.155 4.155 3 C -0.167 4.167 4 N -0.070 5.070 5 C -0.054 4.054 6 N -0.094 5.094 7 C -0.179 4.179 8 C 0.390 3.610 9 O -0.408 6.408 10 N -0.363 5.363 11 C -0.035 4.035 12 C 0.038 3.962 13 H 0.134 0.866 14 O -0.356 6.356 15 C -0.100 4.100 16 N -0.297 5.297 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.444 6.444 20 N -0.231 5.231 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.199 0.801 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.248 0.752 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.220 0.780 40 H 0.051 0.949 41 H 0.102 0.898 42 H 0.179 0.821 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.203 0.797 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.715 32.920 0.628 35.296 hybrid contribution -2.329 -0.733 1.068 2.665 sum -15.044 32.187 1.696 35.570 Atomic orbital electron populations 1.20181 0.87996 1.03100 1.02393 1.20399 0.97530 0.90407 1.07182 1.22639 0.83642 1.00605 1.09859 1.45288 1.07194 1.03722 1.50837 1.22214 0.84776 0.93779 1.04656 1.73518 1.23171 0.93880 1.18829 1.21792 0.89563 0.94903 1.11648 1.16862 0.85317 0.82637 0.76227 1.90774 1.16856 1.82736 1.50470 1.45721 1.10487 1.05523 1.74544 1.22093 0.97583 0.80412 1.03433 1.22226 0.92443 0.92640 0.88848 0.86567 1.86672 1.43434 1.90218 1.15325 1.22538 0.92930 0.92714 1.01787 1.59963 1.18020 1.03261 1.48499 1.21721 0.96603 0.88673 1.01517 1.19698 0.90217 0.82515 0.84050 1.90577 1.28458 1.72009 1.53376 1.42203 1.08402 1.05659 1.66795 1.19442 0.87777 0.88468 1.47710 0.86274 1.25036 0.97467 0.95987 0.97670 1.69626 1.27320 1.05933 1.49278 0.86664 0.83697 0.79997 0.78960 1.19605 1.20201 1.19551 0.91447 0.91985 0.89890 0.80123 0.89533 0.88539 0.88307 0.75215 0.90884 0.90073 0.77986 0.94903 0.89813 0.82125 0.93784 0.89458 0.79700 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 9.93 36.01 0.36 -0.27 16 2 C -0.15 -1.35 6.25 -104.40 -0.65 -2.00 16 3 C -0.03 -0.17 11.40 -17.17 -0.20 -0.36 16 4 N -0.28 -2.01 3.70 -68.13 -0.25 -2.26 16 5 C 0.09 0.21 11.31 59.85 0.68 0.89 16 6 N -0.26 -2.59 11.67 33.42 0.39 -2.20 16 7 C -0.02 -0.21 7.13 -82.77 -0.59 -0.80 16 8 C 0.60 7.25 7.83 -12.39 -0.10 7.16 16 9 O -0.53 -7.53 15.12 5.30 0.08 -7.45 16 10 N -0.71 -7.19 5.50 -61.29 -0.34 -7.53 16 11 C 0.09 0.81 5.31 -4.04 -0.02 0.79 16 12 C 0.10 0.95 3.27 -26.73 -0.09 0.86 16 13 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 14 O -0.55 -5.75 12.62 -35.23 -0.44 -6.20 16 15 C 0.03 0.33 5.39 -3.83 -0.02 0.31 16 16 N -0.66 -10.17 6.13 -115.06 -0.70 -10.87 16 17 C 0.05 0.78 6.17 -4.97 -0.03 0.75 16 18 C 0.45 10.32 7.82 -10.98 -0.09 10.23 16 19 O -0.56 -15.38 15.78 5.55 0.09 -15.29 16 20 N -0.59 -14.20 5.09 -10.96 -0.06 -14.25 16 21 C -0.31 -8.73 10.16 -14.93 -0.15 -8.88 16 22 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.92 13.96 55.50 0.77 -25.15 16 25 Si 0.88 19.47 27.74 -169.99 -4.71 14.76 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 29 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.81 6.72 -51.92 -0.35 0.46 16 32 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 33 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 34 H 0.10 -0.02 8.13 -51.93 -0.42 -0.44 16 35 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.41 4.02 8.20 -40.82 -0.33 3.69 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.37 2.74 9.04 45.56 0.41 3.15 16 40 H 0.03 0.31 8.14 -51.92 -0.42 -0.12 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.36 5.89 7.82 -39.29 -0.31 5.58 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 45 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 46 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 394.47 15.07 5.94 5.94 Total: -1.00 -38.11 394.47 -6.09 -44.20 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -5.86 Total: 16.58 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -0.99 Total: 9.73 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -0.19 Total: -62.27 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.28 Total: -28.94 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.76 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.11 -6.09 -44.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753911553.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.626 kcal (2) G-P(sol) polarization free energy of solvation -38.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds