Wall clock time and date at job start Tue Mar 31 2020 22:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35366 * 127.24485 * 2 1 4 4 N 1.35034 * 107.22274 * 180.14340 * 3 2 1 5 5 C 1.46506 * 124.88249 * 179.87379 * 4 3 2 6 6 N 1.28466 * 110.23334 * 359.60036 * 4 3 2 7 7 C 1.31802 * 110.07228 * 0.25204 * 6 4 3 8 8 C 1.47712 * 126.51667 * 180.02562 * 7 6 4 9 9 O 1.21571 * 119.99952 * 179.97438 * 8 7 6 10 10 N 1.34782 * 120.00158 * 359.97024 * 8 7 6 11 11 C 1.46494 * 120.00066 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47238 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.46927 * 304.99945 * 12 11 10 14 14 O 1.42894 * 109.47145 * 64.99831 * 12 11 10 15 15 C 1.52994 * 109.47142 * 185.00040 * 12 11 10 16 16 N 1.46902 * 109.47206 * 180.02562 * 15 12 11 17 17 C 1.46898 * 111.00085 * 179.97438 * 16 15 12 18 18 C 1.50708 * 109.46995 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00038 * 359.97438 * 18 17 16 20 20 N 1.34769 * 119.99876 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99851 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99757 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00085 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00032 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00022 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47344 * 89.99622 * 25 23 21 27 27 H 1.48507 * 109.47124 * 209.99934 * 25 23 21 28 28 H 1.48507 * 109.46966 * 329.99644 * 25 23 21 29 29 H 1.09008 * 109.46822 * 270.27773 * 1 2 3 30 30 H 1.08992 * 109.47608 * 30.28324 * 1 2 3 31 31 H 1.09008 * 109.47013 * 150.28850 * 1 2 3 32 32 H 1.07998 * 126.38568 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.46871 * 269.71642 * 5 4 3 34 34 H 1.08994 * 109.46947 * 29.71350 * 5 4 3 35 35 H 1.08997 * 109.47271 * 149.71867 * 5 4 3 36 36 H 0.97002 * 119.99620 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.47232 * 299.99787 * 11 10 8 38 38 H 1.08998 * 109.47731 * 59.99584 * 11 10 8 39 39 H 0.96694 * 114.00403 * 60.00080 * 14 12 11 40 40 H 1.09008 * 109.46945 * 299.99484 * 15 12 11 41 41 H 1.08997 * 109.47763 * 60.00030 * 15 12 11 42 42 H 1.00901 * 110.99885 * 56.03859 * 16 15 12 43 43 H 1.08993 * 109.47107 * 299.99155 * 17 16 15 44 44 H 1.08997 * 109.47547 * 59.99912 * 17 16 15 45 45 H 0.97003 * 120.00245 * 359.97438 * 20 18 17 46 46 H 0.97008 * 119.99844 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6153 -0.0032 5 6 4.7937 1.4576 -0.0070 6 7 3.5998 -0.6694 0.0032 7 6 2.3635 -1.1263 0.0055 8 6 1.9506 -2.5445 0.0131 9 8 0.7698 -2.8338 0.0150 10 7 2.8829 -3.5179 0.0180 11 6 2.4734 -4.9244 0.0250 12 6 3.7159 -5.8173 0.0301 13 1 4.3552 -5.5550 -0.8128 14 8 4.4344 -5.6267 1.2504 15 6 3.2914 -7.2824 -0.0883 16 7 4.4842 -8.1398 -0.0828 17 6 4.1144 -9.5571 -0.1946 18 6 5.3612 -10.4037 -0.1863 19 8 6.4506 -9.8781 -0.0965 20 7 5.2656 -11.7449 -0.2785 21 6 6.3998 -12.5150 -0.2715 22 1 7.3699 -12.0469 -0.1924 23 6 6.3012 -13.8978 -0.3660 24 7 7.3884 -14.6360 -0.3588 25 14 4.6234 -14.7073 -0.5036 26 1 4.2495 -14.8314 -1.9354 27 1 4.6729 -16.0571 0.1139 28 1 3.6139 -13.8772 0.2016 29 1 -0.3633 0.0050 1.0277 30 1 -0.3634 0.8873 -0.5182 31 1 -0.3633 -0.8926 -0.5094 32 1 2.0219 2.1138 0.0004 33 1 5.0911 1.6617 -1.0356 34 1 4.5792 2.3970 0.5024 35 1 5.6026 0.9407 0.5093 36 1 3.8251 -3.2870 0.0168 37 1 1.8785 -5.1252 0.9160 38 1 1.8784 -5.1341 -0.8638 39 1 3.9256 -5.8413 2.0442 40 1 2.6520 -7.5447 0.7547 41 1 2.7433 -7.4279 -1.0191 42 1 5.0434 -7.9762 0.7410 43 1 3.4807 -9.8347 0.6476 44 1 3.5722 -9.7187 -1.1262 45 1 4.3943 -12.1653 -0.3499 46 1 7.3196 -15.6014 -0.4252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753911553.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:33 Heat of formation + Delta-G solvation = -72.256863 kcal Electronic energy + Delta-G solvation = -27925.766971 eV Core-core repulsion = 23658.016644 eV Total energy + Delta-G solvation = -4267.750327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.64235 -40.64572 -40.28842 -38.97241 -36.33720 -35.71696 -35.34654 -34.83560 -33.74663 -32.93117 -31.38030 -29.29281 -28.71110 -27.55690 -26.28095 -24.61200 -23.25125 -22.74398 -21.64026 -21.30470 -20.99795 -20.27510 -18.81964 -18.19041 -17.51251 -17.35776 -17.32082 -17.18330 -16.89258 -16.50824 -16.27469 -15.86298 -15.66634 -15.20731 -15.00010 -14.86626 -14.49583 -14.44516 -14.31189 -14.17090 -14.13411 -13.83052 -13.48000 -13.34050 -13.24980 -13.20739 -13.01829 -12.95941 -12.69605 -12.41102 -12.00068 -11.97633 -11.81788 -11.51438 -11.33378 -11.01463 -10.42212 -10.35141 -10.24874 -10.09355 -9.68551 -9.31948 -8.41261 -6.02480 0.50600 1.14888 1.30581 1.36431 1.45169 1.59469 1.95805 2.09694 2.23447 2.32852 2.73016 3.14987 3.30450 3.36797 3.49505 3.84264 3.88009 3.96630 4.05460 4.13609 4.18088 4.36193 4.41326 4.41960 4.48166 4.49799 4.54340 4.58869 4.68030 4.70728 4.76451 4.90273 5.05113 5.08171 5.20232 5.32938 5.51192 5.52456 5.89365 5.90297 6.03349 6.36715 6.39362 6.59901 6.77954 6.88081 6.88526 7.13202 7.39719 7.96854 8.76451 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028799 B = 0.001551 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.034807 B =18045.932802 C =18864.973213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.278 5.278 5 C 0.075 3.925 6 N -0.280 5.280 7 C -0.052 4.052 8 C 0.600 3.400 9 O -0.563 6.563 10 N -0.706 5.706 11 C 0.096 3.904 12 C 0.111 3.889 13 H 0.102 0.898 14 O -0.568 6.568 15 C 0.034 3.966 16 N -0.686 5.686 17 C 0.062 3.938 18 C 0.446 3.554 19 O -0.616 6.616 20 N -0.590 5.590 21 C -0.331 4.331 22 H 0.054 0.946 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.967 3.033 26 H -0.257 1.257 27 H -0.275 1.275 28 H -0.230 1.230 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.224 0.776 33 H 0.100 0.900 34 H 0.130 0.870 35 H 0.096 0.904 36 H 0.413 0.587 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.386 0.614 40 H 0.057 0.943 41 H 0.098 0.902 42 H 0.348 0.652 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.390 0.610 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.825 34.681 1.667 39.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.184 4.184 3 C -0.150 4.150 4 N -0.067 5.067 5 C -0.063 4.063 6 N -0.118 5.118 7 C -0.210 4.210 8 C 0.385 3.615 9 O -0.441 6.441 10 N -0.357 5.357 11 C -0.028 4.028 12 C 0.051 3.949 13 H 0.120 0.880 14 O -0.375 6.375 15 C -0.095 4.095 16 N -0.319 5.319 17 C -0.070 4.070 18 C 0.234 3.766 19 O -0.500 6.500 20 N -0.232 5.232 21 C -0.460 4.460 22 H 0.072 0.928 23 C -0.214 4.214 24 N -0.575 5.575 25 Si 0.786 3.214 26 H -0.182 1.182 27 H -0.200 1.200 28 H -0.153 1.153 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.241 0.759 33 H 0.118 0.882 34 H 0.148 0.852 35 H 0.115 0.885 36 H 0.249 0.751 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.236 0.764 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.167 0.833 43 H 0.097 0.903 44 H 0.134 0.866 45 H 0.226 0.774 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.994 34.595 0.644 38.119 hybrid contribution -1.121 -1.080 1.079 1.894 sum -17.116 33.515 1.723 37.672 Atomic orbital electron populations 1.20123 0.87575 1.03030 1.02364 1.20730 0.98287 0.90821 1.08607 1.23238 0.82842 1.01776 1.07191 1.45794 1.08772 1.03168 1.48935 1.22632 0.83319 0.94306 1.06073 1.73462 1.22866 0.95618 1.19811 1.21836 0.90620 0.94881 1.13673 1.17124 0.85090 0.83476 0.75777 1.90741 1.17885 1.83343 1.52136 1.45723 1.10312 1.05800 1.73839 1.22056 0.97185 0.79708 1.03847 1.22032 0.92181 0.92434 0.88288 0.87984 1.86647 1.44363 1.90340 1.16160 1.22609 0.91494 0.91920 1.03511 1.59940 1.20321 1.03232 1.48417 1.21649 0.92980 0.88012 1.04375 1.21052 0.91904 0.82481 0.81143 1.90554 1.31481 1.73019 1.54946 1.42021 1.07798 1.05977 1.67405 1.19020 0.87237 0.89658 1.50134 0.92820 1.26136 1.03252 0.95951 0.96029 1.69812 1.30935 1.06655 1.50107 0.85342 0.77334 0.78684 0.79990 1.18167 1.20014 1.15334 0.91477 0.89459 0.92437 0.75907 0.88174 0.85177 0.88481 0.75107 0.90253 0.89799 0.76430 0.92510 0.88401 0.83252 0.90336 0.86592 0.77400 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 9.93 71.24 0.71 -0.42 16 2 C -0.17 -3.11 6.25 -19.72 -0.12 -3.23 16 3 C -0.01 -0.08 11.40 83.54 0.95 0.87 16 4 N -0.28 -3.47 3.70 -369.45 -1.37 -4.83 16 5 C 0.07 0.18 11.31 127.77 1.44 1.62 16 6 N -0.28 -5.54 11.67 -48.18 -0.56 -6.10 16 7 C -0.05 -1.17 7.13 42.46 0.30 -0.86 16 8 C 0.60 14.77 7.83 86.75 0.68 15.45 16 9 O -0.56 -16.39 15.12 -3.94 -0.06 -16.45 16 10 N -0.71 -14.39 5.50 -466.10 -2.56 -16.96 16 11 C 0.10 1.65 5.31 86.38 0.46 2.11 16 12 C 0.11 2.02 3.27 30.59 0.10 2.12 16 13 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 14 O -0.57 -11.44 12.62 -148.98 -1.88 -13.32 16 15 C 0.03 0.64 5.39 86.30 0.47 1.10 16 16 N -0.69 -19.84 6.13 -517.93 -3.17 -23.02 16 17 C 0.06 1.86 6.17 85.56 0.53 2.39 16 18 C 0.45 20.38 7.82 87.66 0.69 21.07 16 19 O -0.62 -34.94 15.78 -3.07 -0.05 -34.99 16 20 N -0.59 -28.05 5.09 -306.98 -1.56 -29.62 16 21 C -0.33 -19.67 10.16 84.04 0.85 -18.82 16 22 H 0.05 3.81 7.39 -2.91 -0.02 3.78 16 23 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 24 N -0.93 -56.83 13.96 21.66 0.30 -56.53 16 25 Si 0.97 38.90 27.74 68.60 1.90 40.81 16 26 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 27 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 28 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 29 H 0.07 0.98 8.14 -2.38 -0.02 0.97 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 1.18 6.72 -2.38 -0.02 1.16 16 32 H 0.22 0.25 8.06 -2.91 -0.02 0.22 16 33 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.13 -0.55 8.13 -2.39 -0.02 -0.57 16 35 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.41 8.24 8.20 -92.71 -0.76 7.48 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.39 5.21 9.04 -74.06 -0.67 4.54 16 40 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.35 11.23 7.82 -89.69 -0.70 10.53 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.12 2.88 8.14 -2.39 -0.02 2.87 16 45 H 0.39 15.21 5.76 -92.71 -0.53 14.67 16 46 H 0.28 15.48 8.31 -92.70 -0.77 14.71 16 Total: -1.00 -90.80 394.47 -3.16 -93.96 By element: Atomic # 1 Polarization: 45.69 SS G_CDS: -1.67 Total: 44.02 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: 7.52 Total: 23.02 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -8.92 Total: -137.05 kcal Atomic # 8 Polarization: -62.78 SS G_CDS: -1.99 Total: -64.77 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 1.90 Total: 40.81 kcal Total: -90.80 -3.16 -93.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753911553.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.702 kcal (2) G-P(sol) polarization free energy of solvation -90.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds