Wall clock time and date at job start Tue Mar 31 2020 22:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29950 * 125.30074 * 2 1 4 4 O 1.41873 * 107.41337 * 180.02562 * 3 2 1 5 5 N 1.41878 * 106.38881 * 359.77781 * 4 3 2 6 6 C 1.29958 * 107.40998 * 0.37263 * 5 4 3 7 7 C 1.50700 * 125.30051 * 179.89143 * 6 5 4 8 8 C 1.50699 * 109.47095 * 269.69137 * 7 6 5 9 9 O 1.21272 * 120.00003 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99932 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00050 * 180.02562 * 10 8 7 12 12 H 1.08993 * 109.47452 * 35.00094 * 11 10 8 13 13 C 1.52997 * 109.47007 * 274.99876 * 11 10 8 14 14 C 1.53006 * 109.46998 * 155.00016 * 11 10 8 15 15 H 1.08995 * 109.46794 * 295.00080 * 14 11 10 16 16 C 1.52995 * 109.47234 * 55.00214 * 14 11 10 17 17 N 1.46905 * 109.46684 * 174.99954 * 14 11 10 18 18 C 1.46898 * 110.99406 * 154.99848 * 17 14 11 19 19 C 1.50710 * 109.46980 * 179.97438 * 18 17 14 20 20 O 1.21297 * 119.99458 * 0.02562 * 19 18 17 21 21 N 1.34769 * 120.00188 * 180.02562 * 19 18 17 22 22 C 1.37101 * 120.00070 * 180.02562 * 21 19 18 23 23 H 1.08000 * 119.99601 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99839 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00035 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99747 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47018 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47375 * 120.00019 * 26 24 22 29 29 H 1.48492 * 109.47175 * 240.00039 * 26 24 22 30 30 H 1.09000 * 109.47030 * 269.99731 * 1 2 3 31 31 H 1.08997 * 109.47585 * 29.99982 * 1 2 3 32 32 H 1.09003 * 109.47112 * 149.99947 * 1 2 3 33 33 H 1.09006 * 109.47079 * 149.68979 * 7 6 5 34 34 H 1.08999 * 109.47132 * 29.69524 * 7 6 5 35 35 H 0.97002 * 119.99920 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.47289 * 180.02562 * 13 11 10 37 37 H 1.09004 * 109.47261 * 299.99917 * 13 11 10 38 38 H 1.09002 * 109.47153 * 60.00089 * 13 11 10 39 39 H 1.09006 * 109.47389 * 299.99793 * 16 14 11 40 40 H 1.09003 * 109.47743 * 59.99455 * 16 14 11 41 41 H 1.09002 * 109.47112 * 179.97438 * 16 14 11 42 42 H 1.00893 * 111.00141 * 31.04847 * 17 14 11 43 43 H 1.08998 * 109.47868 * 299.99755 * 18 17 14 44 44 H 1.09000 * 109.47419 * 60.00285 * 18 17 14 45 45 H 0.97000 * 120.00198 * 0.02562 * 21 19 18 46 46 H 0.97010 * 119.99752 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6081 0.6248 -0.0006 5 7 3.5710 -0.7935 0.0043 6 6 2.3213 -1.1498 -0.0006 7 6 1.8210 -2.5713 -0.0003 8 6 1.6533 -3.0452 -1.4210 9 8 1.9147 -2.3019 -2.3429 10 7 1.2128 -4.2949 -1.6669 11 6 1.0503 -4.7557 -3.0480 12 1 1.8297 -4.3176 -3.6714 13 6 -0.3222 -4.3267 -3.5707 14 6 1.1590 -6.2813 -3.0928 15 1 2.1662 -6.5823 -2.8049 16 6 0.1468 -6.8933 -2.1224 17 7 0.8776 -6.7524 -4.4555 18 6 1.5174 -8.0507 -4.7061 19 6 1.2067 -8.5012 -6.1103 20 8 0.5202 -7.8084 -6.8314 21 7 1.6915 -9.6736 -6.5648 22 6 1.4093 -10.0831 -7.8424 23 1 0.7987 -9.4659 -8.4847 24 6 1.9097 -11.2917 -8.3111 25 7 2.6530 -12.0424 -7.5296 26 14 1.5245 -11.8499 -10.0516 27 1 0.6741 -10.8330 -10.7208 28 1 2.7903 -12.0130 -10.8107 29 1 0.8033 -13.1472 -10.0071 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 0.8612 -2.6186 0.5143 34 1 2.5402 -3.2095 0.5131 35 1 1.0040 -4.8895 -0.9295 36 1 -0.4433 -4.6699 -4.5981 37 1 -1.1016 -4.7649 -2.9473 38 1 -0.3996 -3.2399 -3.5388 39 1 0.3555 -6.5437 -1.1112 40 1 -0.8605 -6.5922 -2.4101 41 1 0.2239 -7.9801 -2.1546 42 1 1.1646 -6.0696 -5.1406 43 1 2.5963 -7.9535 -4.5858 44 1 1.1375 -8.7860 -3.9967 45 1 2.2402 -10.2278 -5.9880 46 1 3.0026 -12.8860 -7.8570 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755261639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:29 Heat of formation + Delta-G solvation = 17.993163 kcal Electronic energy + Delta-G solvation = -28642.287622 eV Core-core repulsion = 24378.450829 eV Total energy + Delta-G solvation = -4263.836792 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.96939 -40.32427 -38.55019 -37.47811 -35.01620 -34.61505 -33.88465 -33.81534 -31.58724 -31.17057 -29.77953 -29.24798 -28.96730 -26.63305 -24.77851 -23.90465 -22.94795 -21.60173 -20.70012 -19.92370 -19.36260 -18.07197 -17.85511 -17.39655 -16.64970 -16.33533 -15.92576 -15.79885 -15.53777 -15.11275 -14.80578 -14.72849 -14.47472 -14.17866 -13.97385 -13.91992 -13.77633 -13.44103 -13.30313 -13.08588 -12.82790 -12.53143 -12.30970 -12.17740 -12.14717 -12.06618 -11.87895 -11.65719 -11.49036 -11.36890 -11.15585 -11.04515 -11.00037 -10.80757 -10.36290 -10.33264 -10.24933 -9.54807 -9.47906 -8.51782 -8.18110 -7.99366 -6.44663 -3.85473 0.12768 1.46309 2.10556 2.18916 2.60380 2.79179 3.14562 3.25495 3.32680 3.36861 3.86965 3.96893 4.04527 4.22938 4.27888 4.29262 4.49555 4.54069 4.67379 4.76168 4.79116 4.85025 5.04201 5.08767 5.13487 5.22016 5.30731 5.33440 5.46489 5.48664 5.61595 5.70887 5.82023 5.86044 5.89820 6.03828 6.21248 6.23740 6.33326 6.50096 6.98602 7.11486 7.52273 7.52943 7.72470 8.03429 8.57782 9.15100 9.51007 10.02040 10.73061 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.001677 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.432070 B =16693.783842 C =16813.695340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.087 3.913 3 N -0.277 5.277 4 O 0.029 5.971 5 N -0.261 5.261 6 C 0.095 3.905 7 C -0.082 4.082 8 C 0.518 3.482 9 O -0.527 6.527 10 N -0.717 5.717 11 C 0.141 3.859 12 H 0.088 0.912 13 C -0.157 4.157 14 C 0.076 3.924 15 H 0.048 0.952 16 C -0.144 4.144 17 N -0.656 5.656 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.402 0.598 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.352 0.648 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.865 15.882 22.114 27.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 N -0.023 5.023 4 O -0.113 6.113 5 N -0.003 5.003 6 C -0.089 4.089 7 C -0.123 4.123 8 C 0.301 3.699 9 O -0.402 6.402 10 N -0.371 5.371 11 C 0.037 3.963 12 H 0.106 0.894 13 C -0.215 4.215 14 C -0.035 4.035 15 H 0.066 0.934 16 C -0.202 4.202 17 N -0.290 5.290 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.122 0.878 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.239 0.761 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.172 0.828 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.446 17.267 21.065 27.598 hybrid contribution 0.606 -1.308 -0.199 1.455 sum -3.840 15.959 20.866 26.548 Atomic orbital electron populations 1.20593 0.84166 1.05702 1.04688 1.24517 1.00334 0.88780 0.95982 1.79929 0.89061 1.19575 1.13708 1.93404 1.20200 1.13155 1.84517 1.79919 1.17352 0.91560 1.11476 1.23736 0.90099 0.97635 0.97398 1.20361 1.05265 0.89367 0.97283 1.20036 0.77363 0.82379 0.90088 1.90805 1.49232 1.54382 1.45813 1.46083 1.67495 1.13971 1.09516 1.21141 0.99557 0.93659 0.81967 0.89404 1.22125 0.95481 1.00804 1.03133 1.21727 0.98020 0.92253 0.91517 0.93407 1.21889 1.00268 1.01566 0.96479 1.60204 1.62377 1.04642 1.01797 1.21738 0.96598 0.92353 0.97525 1.19771 0.85440 0.83773 0.88441 1.90531 1.42046 1.55648 1.58431 1.41866 1.45999 1.17907 1.14226 1.19758 1.30109 1.03558 0.89431 0.87828 1.25267 0.96557 0.96101 1.00046 1.69619 1.34529 1.13401 1.36735 0.85796 0.78208 0.78603 0.81723 1.19196 1.20771 1.20731 0.88386 0.88903 0.88847 0.85169 0.85543 0.76135 0.89845 0.91984 0.92841 0.93234 0.91088 0.91956 0.82786 0.93786 0.89502 0.77481 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.34 10.05 36.01 0.36 0.02 16 2 C 0.09 0.70 7.19 -82.38 -0.59 0.11 16 3 N -0.28 -3.09 12.98 33.74 0.44 -2.65 16 4 O 0.03 0.37 13.71 12.02 0.16 0.54 16 5 N -0.26 -3.04 12.98 33.74 0.44 -2.60 16 6 C 0.10 0.81 5.68 -82.38 -0.47 0.34 16 7 C -0.08 -0.36 5.87 -29.04 -0.17 -0.53 16 8 C 0.52 4.18 7.79 -10.99 -0.09 4.09 16 9 O -0.53 -6.90 15.70 5.56 0.09 -6.81 16 10 N -0.72 -4.71 4.99 -53.81 -0.27 -4.97 16 11 C 0.14 1.34 2.30 -67.93 -0.16 1.19 16 12 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 13 C -0.16 -1.56 9.02 37.16 0.33 -1.23 16 14 C 0.08 0.77 2.66 -67.71 -0.18 0.59 16 15 H 0.05 0.48 7.80 -51.93 -0.41 0.08 16 16 C -0.14 -1.20 8.93 37.15 0.33 -0.87 16 17 N -0.66 -9.42 5.14 -107.99 -0.55 -9.97 16 18 C 0.05 0.83 5.97 -4.97 -0.03 0.80 16 19 C 0.44 10.04 7.82 -10.98 -0.09 9.96 16 20 O -0.58 -15.37 15.78 5.54 0.09 -15.29 16 21 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 22 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 26 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 29 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 30 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.23 7.78 -51.93 -0.40 -0.17 16 33 H 0.13 0.02 7.78 -51.93 -0.40 -0.38 16 34 H 0.13 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.40 1.42 6.58 -40.82 -0.27 1.15 16 36 H 0.08 0.99 7.17 -51.93 -0.37 0.62 16 37 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.25 6.29 -51.93 -0.33 -0.08 16 40 H 0.07 0.64 6.57 -51.93 -0.34 0.30 16 41 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 42 H 0.35 5.42 7.62 -39.30 -0.30 5.12 16 43 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 44 H 0.09 1.30 7.44 -51.93 -0.39 0.91 16 45 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 46 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 389.51 15.07 5.87 5.87 Total: -1.00 -36.34 389.51 -5.34 -41.68 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.27 Total: 9.34 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -0.98 Total: 6.57 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.72 Total: -57.74 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: 0.34 Total: -21.56 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.34 -5.34 -41.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755261639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.677 kcal (2) G-P(sol) polarization free energy of solvation -36.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds