Wall clock time and date at job start Tue Mar 31 2020 22:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29950 * 125.30074 * 2 1 4 4 O 1.41873 * 107.41337 * 180.02562 * 3 2 1 5 5 N 1.41878 * 106.38881 * 359.77781 * 4 3 2 6 6 C 1.29958 * 107.40998 * 0.37263 * 5 4 3 7 7 C 1.50700 * 125.30051 * 179.89143 * 6 5 4 8 8 C 1.50699 * 109.47095 * 269.69137 * 7 6 5 9 9 O 1.21272 * 120.00003 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99932 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00050 * 180.02562 * 10 8 7 12 12 H 1.08993 * 109.47452 * 35.00094 * 11 10 8 13 13 C 1.52997 * 109.47007 * 274.99876 * 11 10 8 14 14 C 1.53006 * 109.46998 * 155.00016 * 11 10 8 15 15 H 1.08995 * 109.46794 * 295.00080 * 14 11 10 16 16 C 1.52995 * 109.47234 * 55.00214 * 14 11 10 17 17 N 1.46905 * 109.46684 * 174.99954 * 14 11 10 18 18 C 1.46898 * 110.99406 * 154.99848 * 17 14 11 19 19 C 1.50710 * 109.46980 * 179.97438 * 18 17 14 20 20 O 1.21297 * 119.99458 * 0.02562 * 19 18 17 21 21 N 1.34769 * 120.00188 * 180.02562 * 19 18 17 22 22 C 1.37101 * 120.00070 * 180.02562 * 21 19 18 23 23 H 1.08000 * 119.99601 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99839 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00035 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99747 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47018 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47375 * 120.00019 * 26 24 22 29 29 H 1.48492 * 109.47175 * 240.00039 * 26 24 22 30 30 H 1.09000 * 109.47030 * 269.99731 * 1 2 3 31 31 H 1.08997 * 109.47585 * 29.99982 * 1 2 3 32 32 H 1.09003 * 109.47112 * 149.99947 * 1 2 3 33 33 H 1.09006 * 109.47079 * 149.68979 * 7 6 5 34 34 H 1.08999 * 109.47132 * 29.69524 * 7 6 5 35 35 H 0.97002 * 119.99920 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.47289 * 180.02562 * 13 11 10 37 37 H 1.09004 * 109.47261 * 299.99917 * 13 11 10 38 38 H 1.09002 * 109.47153 * 60.00089 * 13 11 10 39 39 H 1.09006 * 109.47389 * 299.99793 * 16 14 11 40 40 H 1.09003 * 109.47743 * 59.99455 * 16 14 11 41 41 H 1.09002 * 109.47112 * 179.97438 * 16 14 11 42 42 H 1.00893 * 111.00141 * 31.04847 * 17 14 11 43 43 H 1.08998 * 109.47868 * 299.99755 * 18 17 14 44 44 H 1.09000 * 109.47419 * 60.00285 * 18 17 14 45 45 H 0.97000 * 120.00198 * 0.02562 * 21 19 18 46 46 H 0.97010 * 119.99752 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6081 0.6248 -0.0006 5 7 3.5710 -0.7935 0.0043 6 6 2.3213 -1.1498 -0.0006 7 6 1.8210 -2.5713 -0.0003 8 6 1.6533 -3.0452 -1.4210 9 8 1.9147 -2.3019 -2.3429 10 7 1.2128 -4.2949 -1.6669 11 6 1.0503 -4.7557 -3.0480 12 1 1.8297 -4.3176 -3.6714 13 6 -0.3222 -4.3267 -3.5707 14 6 1.1590 -6.2813 -3.0928 15 1 2.1662 -6.5823 -2.8049 16 6 0.1468 -6.8933 -2.1224 17 7 0.8776 -6.7524 -4.4555 18 6 1.5174 -8.0507 -4.7061 19 6 1.2067 -8.5012 -6.1103 20 8 0.5202 -7.8084 -6.8314 21 7 1.6915 -9.6736 -6.5648 22 6 1.4093 -10.0831 -7.8424 23 1 0.7987 -9.4659 -8.4847 24 6 1.9097 -11.2917 -8.3111 25 7 2.6530 -12.0424 -7.5296 26 14 1.5245 -11.8499 -10.0516 27 1 0.6741 -10.8330 -10.7208 28 1 2.7903 -12.0130 -10.8107 29 1 0.8033 -13.1472 -10.0071 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 0.8612 -2.6186 0.5143 34 1 2.5402 -3.2095 0.5131 35 1 1.0040 -4.8895 -0.9295 36 1 -0.4433 -4.6699 -4.5981 37 1 -1.1016 -4.7649 -2.9473 38 1 -0.3996 -3.2399 -3.5388 39 1 0.3555 -6.5437 -1.1112 40 1 -0.8605 -6.5922 -2.4101 41 1 0.2239 -7.9801 -2.1546 42 1 1.1646 -6.0696 -5.1406 43 1 2.5963 -7.9535 -4.5858 44 1 1.1375 -8.7860 -3.9967 45 1 2.2402 -10.2278 -5.9880 46 1 3.0026 -12.8860 -7.8570 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755261639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:28 Heat of formation + Delta-G solvation = -12.777014 kcal Electronic energy + Delta-G solvation = -28643.621917 eV Core-core repulsion = 24378.450829 eV Total energy + Delta-G solvation = -4265.171087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.63393 -41.05135 -40.16170 -38.57420 -36.06823 -35.65294 -35.34143 -34.49419 -33.28050 -32.37225 -30.51094 -29.83842 -29.52074 -28.10963 -26.13631 -25.05186 -23.68337 -22.26538 -21.32566 -21.11626 -20.71841 -19.92688 -18.69451 -18.03471 -17.73720 -17.29374 -17.00487 -16.70477 -16.57182 -16.34458 -16.01442 -15.67058 -15.46042 -15.32784 -15.24616 -14.77489 -14.41156 -14.23609 -14.23103 -13.92787 -13.67717 -13.52497 -13.40326 -13.17774 -13.05529 -13.01205 -12.88185 -12.83280 -12.60471 -12.47237 -12.39463 -12.13914 -12.11808 -11.88153 -11.67564 -11.62991 -11.50961 -11.04656 -10.34963 -10.16226 -10.00990 -9.35747 -8.46943 -5.95262 -0.56553 0.86832 1.36493 1.42062 1.46278 1.51489 1.55921 1.97687 2.06094 2.14142 2.30208 2.79531 2.98520 3.20696 3.45358 3.51138 3.66371 3.81440 3.92191 3.99259 4.16207 4.23035 4.32349 4.38845 4.47736 4.49563 4.52881 4.61336 4.64901 4.70267 4.72973 4.86176 4.90396 5.04071 5.10291 5.10557 5.34699 5.41504 5.47043 5.58451 5.81342 5.89748 6.10569 6.34660 6.48339 6.60420 7.13202 7.18399 7.57038 8.12429 8.70592 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.001677 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.432070 B =16693.783842 C =16813.695340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.098 3.902 3 N -0.311 5.311 4 O -0.021 6.021 5 N -0.296 5.296 6 C 0.105 3.895 7 C -0.074 4.074 8 C 0.519 3.481 9 O -0.584 6.584 10 N -0.698 5.698 11 C 0.150 3.850 12 H 0.059 0.941 13 C -0.150 4.150 14 C 0.079 3.921 15 H 0.057 0.943 16 C -0.142 4.142 17 N -0.669 5.669 18 C 0.066 3.934 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.574 5.574 22 C -0.333 4.333 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.992 3.008 27 H -0.274 1.274 28 H -0.272 1.272 29 H -0.270 1.270 30 H 0.134 0.866 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.187 0.813 34 H 0.154 0.846 35 H 0.422 0.578 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.341 0.659 43 H 0.063 0.937 44 H 0.109 0.891 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.294 14.541 24.616 29.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 N -0.061 5.061 4 O -0.154 6.154 5 N -0.041 5.041 6 C -0.080 4.080 7 C -0.115 4.115 8 C 0.304 3.696 9 O -0.463 6.463 10 N -0.352 5.352 11 C 0.044 3.956 12 H 0.078 0.922 13 C -0.208 4.208 14 C -0.031 4.031 15 H 0.075 0.925 16 C -0.200 4.200 17 N -0.302 5.302 18 C -0.066 4.066 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.197 1.197 29 H -0.195 1.195 30 H 0.152 0.848 31 H 0.109 0.891 32 H 0.131 0.869 33 H 0.204 0.796 34 H 0.172 0.828 35 H 0.262 0.738 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.160 0.840 43 H 0.081 0.919 44 H 0.127 0.873 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.830 15.917 23.640 29.089 hybrid contribution 0.947 -0.898 -0.953 1.616 sum -4.882 15.018 22.687 27.643 Atomic orbital electron populations 1.20916 0.80644 1.06561 1.07113 1.25338 1.02220 0.87928 0.93013 1.79892 0.88698 1.21143 1.16351 1.93365 1.21776 1.14129 1.86140 1.79860 1.19482 0.91086 1.13684 1.24459 0.89235 0.99605 0.94662 1.20661 1.08787 0.86847 0.95159 1.20598 0.76029 0.81981 0.90967 1.90809 1.51668 1.55945 1.47912 1.45818 1.66728 1.13935 1.08766 1.20814 0.98340 0.93114 0.83303 0.92237 1.22028 0.96315 1.00429 1.02020 1.21816 0.99273 0.92518 0.89484 0.92517 1.21915 0.99143 1.00990 0.97955 1.60251 1.62486 1.03675 1.03778 1.21583 0.97983 0.93819 0.93212 1.20919 0.83569 0.82445 0.90584 1.90501 1.43499 1.56547 1.60374 1.41935 1.46677 1.18851 1.13666 1.19692 1.31390 1.04354 0.90794 0.90389 1.26015 0.96004 0.95627 1.03632 1.69672 1.34614 1.13689 1.38106 0.84887 0.78219 0.78119 0.77214 1.19883 1.19748 1.19516 0.84848 0.89129 0.86860 0.79564 0.82800 0.73764 0.92441 0.90209 0.93392 0.89112 0.91700 0.92742 0.83958 0.91875 0.87289 0.76955 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.37 10.05 71.24 0.72 0.35 16 2 C 0.10 1.45 7.19 43.49 0.31 1.76 16 3 N -0.31 -7.14 12.98 -47.16 -0.61 -7.75 16 4 O -0.02 -0.59 13.71 70.17 0.96 0.37 16 5 N -0.30 -6.97 12.98 -47.16 -0.61 -7.59 16 6 C 0.10 1.59 5.68 43.48 0.25 1.84 16 7 C -0.07 -0.34 5.87 29.10 0.17 -0.17 16 8 C 0.52 6.88 7.79 87.66 0.68 7.57 16 9 O -0.58 -14.88 15.70 -3.01 -0.05 -14.93 16 10 N -0.70 -6.65 4.99 -442.55 -2.21 -8.86 16 11 C 0.15 2.60 2.30 44.99 0.10 2.71 16 12 H 0.06 1.41 7.58 -2.39 -0.02 1.40 16 13 C -0.15 -2.81 9.02 71.98 0.65 -2.16 16 14 C 0.08 1.41 2.66 44.91 0.12 1.53 16 15 H 0.06 0.96 7.80 -2.39 -0.02 0.94 16 16 C -0.14 -1.81 8.93 71.98 0.64 -1.17 16 17 N -0.67 -18.63 5.14 -495.56 -2.54 -21.18 16 18 C 0.07 2.09 5.97 85.56 0.51 2.60 16 19 C 0.44 20.18 7.82 87.66 0.69 20.86 16 20 O -0.62 -33.85 15.78 -3.08 -0.05 -33.90 16 21 N -0.57 -28.88 5.29 -306.98 -1.62 -30.51 16 22 C -0.33 -18.75 9.68 84.04 0.81 -17.93 16 23 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 24 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 25 N -0.92 -49.07 13.05 21.66 0.28 -48.79 16 26 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 30 H 0.13 -0.35 8.14 -2.39 -0.02 -0.37 16 31 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.11 0.04 7.78 -2.39 -0.02 0.02 16 33 H 0.19 -1.23 7.78 -2.38 -0.02 -1.25 16 34 H 0.15 0.00 8.14 -2.39 -0.02 -0.01 16 35 H 0.42 0.65 6.58 -92.71 -0.61 0.05 16 36 H 0.06 1.39 7.17 -2.39 -0.02 1.37 16 37 H 0.08 1.19 6.57 -2.38 -0.02 1.18 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 0.39 6.29 -2.38 -0.02 0.38 16 40 H 0.06 0.94 6.57 -2.39 -0.02 0.93 16 41 H 0.05 0.82 7.45 -2.39 -0.02 0.80 16 42 H 0.34 10.71 7.62 -89.70 -0.68 10.03 16 43 H 0.06 1.78 8.06 -2.39 -0.02 1.76 16 44 H 0.11 3.00 7.44 -2.39 -0.02 2.98 16 45 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 46 H 0.28 13.82 8.31 -92.70 -0.77 13.05 16 Total: -1.00 -86.33 389.51 0.73 -85.60 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: -0.97 Total: 25.22 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 6.12 Total: 17.55 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -7.32 Total: -124.67 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: 0.87 Total: -48.46 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -86.33 0.73 -85.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755261639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.824 kcal (2) G-P(sol) polarization free energy of solvation -86.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds