Wall clock time and date at job start Tue Mar 31 2020 22:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00549 * 2 1 4 4 C 1.52999 * 109.46977 * 269.99984 * 3 2 1 5 5 C 1.52992 * 109.46986 * 299.99446 * 4 3 2 6 6 C 1.53005 * 109.47315 * 59.99804 * 4 3 2 7 7 C 1.53004 * 109.46812 * 179.97438 * 4 3 2 8 8 N 1.46901 * 109.46703 * 179.97438 * 7 4 3 9 9 C 1.46900 * 110.99838 * 180.02562 * 8 7 4 10 10 C 1.50703 * 109.47423 * 180.02562 * 9 8 7 11 11 O 1.21291 * 119.99676 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00206 * 180.02562 * 10 9 8 13 13 C 1.37093 * 120.00116 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99772 * 0.02562 * 13 12 10 15 15 C 1.38949 * 120.00286 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99919 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99935 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47228 * 90.00143 * 17 15 13 19 19 H 1.48506 * 109.47010 * 209.99712 * 17 15 13 20 20 H 1.48502 * 109.47206 * 329.99868 * 17 15 13 21 21 C 1.34777 * 119.99886 * 179.97438 * 2 1 3 22 22 O 1.21499 * 120.00313 * 179.97438 * 21 2 1 23 23 C 1.48280 * 119.99896 * 0.02562 * 21 2 1 24 24 C 1.47496 * 128.71180 * 179.97438 * 23 21 2 25 25 N 1.30642 * 102.71677 * 179.97438 * 24 23 21 26 26 O 1.20839 * 109.61891 * 359.97438 * 25 24 23 27 27 N 1.20905 * 115.90819 * 0.02562 * 26 25 24 28 28 H 1.08994 * 109.47474 * 270.00191 * 1 2 3 29 29 H 1.09004 * 109.46505 * 30.00459 * 1 2 3 30 30 H 1.09007 * 109.46913 * 149.99904 * 1 2 3 31 31 H 1.09010 * 109.46725 * 29.99692 * 3 2 1 32 32 H 1.08994 * 109.47733 * 149.99600 * 3 2 1 33 33 H 1.08995 * 109.47539 * 60.00559 * 5 4 3 34 34 H 1.09002 * 109.47308 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.47417 * 300.00242 * 5 4 3 36 36 H 1.08999 * 109.46847 * 59.99798 * 6 4 3 37 37 H 1.08993 * 109.46999 * 180.02562 * 6 4 3 38 38 H 1.08995 * 109.46713 * 299.99781 * 6 4 3 39 39 H 1.08994 * 109.47719 * 299.99891 * 7 4 3 40 40 H 1.08998 * 109.46839 * 60.00219 * 7 4 3 41 41 H 1.00897 * 110.99911 * 56.05133 * 8 7 4 42 42 H 1.08999 * 109.47096 * 300.00165 * 9 8 7 43 43 H 1.09000 * 109.47004 * 60.00299 * 9 8 7 44 44 H 0.97000 * 120.00234 * 0.02562 * 12 10 9 45 45 H 0.97003 * 119.99885 * 180.02562 * 16 15 13 46 46 H 1.07995 * 128.63900 * 359.74069 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4527 1.7103 -1.4425 5 6 3.2795 0.6440 -2.1636 6 6 1.1158 1.8933 -2.1638 7 6 3.2172 3.0356 -1.4425 8 7 3.4626 3.4592 -2.8275 9 6 4.1970 4.7309 -2.8667 10 6 4.4292 5.1330 -4.3004 11 8 4.0233 4.4291 -5.2010 12 7 5.0888 6.2741 -4.5820 13 6 5.3005 6.6395 -5.8862 14 1 4.9383 6.0132 -6.6881 15 6 5.9809 7.8157 -6.1765 16 7 6.4212 8.5780 -5.2008 17 14 6.2687 8.3140 -7.9537 18 1 5.1332 9.1472 -8.4242 19 1 7.5287 9.0939 -8.0513 20 1 6.3731 7.0970 -8.7983 21 6 2.1389 -1.1672 0.0005 22 8 3.3539 -1.1673 0.0001 23 6 1.3974 -2.4513 0.0005 24 6 1.9329 -3.8257 0.0005 25 7 0.8498 -4.5563 0.0011 26 8 -0.1231 -3.8396 0.0019 27 7 0.0967 -2.6506 0.0015 28 1 -0.3634 0.0000 1.0276 29 1 -0.3632 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6085 2.0284 0.5138 32 1 3.1500 1.1384 0.5138 33 1 2.7345 -0.3000 -2.1637 34 1 3.4616 0.9587 -3.1912 35 1 4.2319 0.5136 -1.6498 36 1 0.5268 2.6530 -1.6500 37 1 1.2975 2.2074 -3.1916 38 1 0.5708 0.9494 -2.1638 39 1 2.6279 3.7951 -0.9288 40 1 4.1696 2.9055 -0.9285 41 1 2.5984 3.5243 -3.3442 42 1 3.6146 5.5025 -2.3631 43 1 5.1560 4.6123 -2.3624 44 1 5.4144 6.8364 -3.8618 45 1 6.8959 9.3993 -5.4035 46 1 2.9637 -4.1478 -0.0033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755286351.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:56 Heat of formation + Delta-G solvation = 62.387662 kcal Electronic energy + Delta-G solvation = -29346.226768 eV Core-core repulsion = 25084.315066 eV Total energy + Delta-G solvation = -4261.911703 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.37831 -40.72746 -38.50328 -37.70368 -35.95422 -35.08519 -34.94133 -33.96532 -33.02730 -31.19358 -28.51818 -27.77890 -27.38649 -26.78181 -25.67882 -24.79626 -24.21056 -23.09455 -20.71346 -19.51145 -19.39458 -18.81943 -18.63605 -17.88303 -17.81532 -16.80017 -16.35313 -15.98221 -15.55272 -15.34086 -14.72497 -14.50213 -14.41905 -14.11308 -13.88554 -13.68844 -13.58492 -13.55417 -13.27299 -12.99628 -12.85123 -12.50269 -12.08450 -11.87544 -11.86812 -11.69195 -11.60689 -11.51966 -11.47358 -11.23535 -11.09267 -11.03810 -10.88382 -10.75621 -10.52947 -10.39030 -10.21238 -9.50327 -9.11321 -8.43853 -8.02178 -7.94583 -6.41153 -3.81860 0.26063 0.86571 2.07877 2.49367 2.90630 3.01892 3.18083 3.26697 3.32902 3.38958 3.92109 4.07261 4.11163 4.29656 4.33290 4.61709 4.68828 4.78230 4.83720 4.87785 5.06007 5.09491 5.18358 5.26595 5.29807 5.41351 5.46508 5.56924 5.64761 5.77290 5.79789 5.87541 5.98906 6.01963 6.06422 6.14811 6.27811 6.32722 6.58771 6.71602 7.23905 7.46354 7.55745 7.68752 7.93550 8.07196 8.62169 9.18633 9.55296 10.06846 10.76607 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031212 B = 0.001786 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.878319 B =15672.199308 C =15839.686729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.589 5.589 3 C 0.125 3.875 4 C -0.077 4.077 5 C -0.124 4.124 6 C -0.150 4.150 7 C 0.072 3.928 8 N -0.665 5.665 9 C 0.051 3.949 10 C 0.441 3.559 11 O -0.583 6.583 12 N -0.564 5.564 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.600 3.400 22 O -0.503 6.503 23 C -0.035 4.035 24 C 0.037 3.963 25 N -0.352 5.352 26 O 0.335 5.665 27 N -0.320 5.320 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.348 0.652 42 H 0.042 0.958 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.803 -18.730 16.518 28.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.321 5.321 3 C 0.003 3.997 4 C -0.078 4.078 5 C -0.181 4.181 6 C -0.208 4.208 7 C -0.059 4.059 8 N -0.298 5.298 9 C -0.082 4.082 10 C 0.227 3.773 11 O -0.468 6.468 12 N -0.201 5.201 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.543 5.543 17 Si 0.757 3.243 18 H -0.205 1.205 19 H -0.209 1.209 20 H -0.194 1.194 21 C 0.384 3.616 22 O -0.376 6.376 23 C -0.200 4.200 24 C -0.149 4.149 25 N -0.074 5.074 26 O 0.111 5.889 27 N -0.043 5.043 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.045 0.955 40 H 0.092 0.908 41 H 0.169 0.831 42 H 0.060 0.940 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -12.866 -19.778 15.826 28.410 hybrid contribution 0.532 1.693 -0.110 1.778 sum -12.334 -18.085 15.716 26.947 Atomic orbital electron populations 1.22406 0.78374 1.04962 1.02766 1.47562 1.07705 1.05429 1.71416 1.21704 0.97791 0.83053 0.97142 1.20958 0.96142 0.96280 0.94426 1.21709 0.99001 0.95701 1.01684 1.22041 0.95990 1.01273 1.01453 1.21893 0.99265 0.94085 0.90610 1.60066 1.27467 1.30758 1.11517 1.21667 0.99404 0.90367 0.96757 1.19825 0.84350 0.83389 0.89780 1.90519 1.55072 1.53569 1.47598 1.41864 1.49574 1.19898 1.08761 1.19701 1.33536 1.05591 0.84014 0.87946 1.25262 0.96907 0.96084 0.99742 1.69613 1.38556 1.14267 1.31907 0.85856 0.77654 0.78707 0.82060 1.20458 1.20924 1.19411 1.16524 0.86158 0.80904 0.77992 1.90879 1.11831 1.85914 1.48974 1.26312 0.88957 0.97918 1.06826 1.27765 1.01315 0.86577 0.99195 1.75090 0.95404 1.20705 1.16241 1.85102 1.30935 1.09845 1.62996 1.75485 1.17039 0.98357 1.13449 0.92094 0.89750 0.88943 0.89821 0.89035 0.94539 0.91016 0.92226 0.92893 0.91346 0.92496 0.95495 0.90789 0.83097 0.94002 0.89595 0.77468 0.91898 0.75592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 8.79 59.85 0.53 0.88 16 2 N -0.59 -4.90 2.40 -182.53 -0.44 -5.34 16 3 C 0.13 1.06 4.60 -4.04 -0.02 1.04 16 4 C -0.08 -0.79 0.67 -154.51 -0.10 -0.89 16 5 C -0.12 -1.57 6.98 37.15 0.26 -1.31 16 6 C -0.15 -1.45 6.89 37.16 0.26 -1.19 16 7 C 0.07 0.84 4.65 -3.82 -0.02 0.82 16 8 N -0.66 -10.47 5.34 -115.06 -0.61 -11.08 16 9 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 10 C 0.44 10.43 7.82 -10.99 -0.09 10.35 16 11 O -0.58 -15.88 15.78 5.55 0.09 -15.79 16 12 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 13 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 14 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 16 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 17 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 21 C 0.60 5.90 6.11 -12.13 -0.07 5.83 16 22 O -0.50 -6.19 14.81 5.37 0.08 -6.11 16 23 C -0.03 -0.29 7.19 -80.07 -0.58 -0.87 16 24 C 0.04 0.26 12.63 -14.29 -0.18 0.08 16 25 N -0.35 -2.70 12.22 30.71 0.38 -2.33 16 26 O 0.34 2.53 11.65 27.26 0.32 2.84 16 27 N -0.32 -2.47 8.99 33.49 0.30 -2.17 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.45 6.05 -51.93 -0.31 0.14 16 30 H 0.09 0.62 5.06 -51.92 -0.26 0.36 16 31 H 0.08 0.54 8.07 -51.92 -0.42 0.12 16 32 H 0.09 0.85 7.42 -51.93 -0.39 0.47 16 33 H 0.04 0.45 6.15 -51.93 -0.32 0.13 16 34 H 0.07 1.07 7.60 -51.93 -0.39 0.68 16 35 H 0.06 0.82 7.73 -51.93 -0.40 0.42 16 36 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 37 H 0.07 0.79 6.57 -51.93 -0.34 0.45 16 38 H 0.06 0.51 5.99 -51.93 -0.31 0.19 16 39 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.35 5.68 6.47 -39.29 -0.25 5.42 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 45 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.23 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -32.53 375.39 -5.07 -37.60 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -6.19 Total: 11.34 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -0.29 Total: 7.55 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.29 Total: -59.21 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.48 Total: -19.06 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.53 -5.07 -37.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755286351.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.987 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds