Wall clock time and date at job start Tue Mar 31 2020 22:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47237 * 2 1 4 4 C 1.53003 * 109.46961 * 120.00081 * 2 1 3 5 5 H 1.09006 * 109.47004 * 185.43072 * 4 2 1 6 6 C 1.53001 * 109.47162 * 305.43151 * 4 2 1 7 7 C 1.52995 * 109.47021 * 184.99987 * 6 4 2 8 8 N 1.46497 * 109.47068 * 179.97438 * 7 6 4 9 9 C 1.34777 * 119.99945 * 180.02562 * 8 7 6 10 10 O 1.21500 * 120.00054 * 359.97438 * 9 8 7 11 11 C 1.48283 * 120.00040 * 180.02562 * 9 8 7 12 12 C 1.47491 * 128.71490 * 179.97438 * 11 9 8 13 13 N 1.30641 * 102.71604 * 179.97438 * 12 11 9 14 14 O 1.20839 * 109.62293 * 359.97438 * 13 12 11 15 15 N 1.20908 * 115.90603 * 359.69787 * 14 13 12 16 16 N 1.46901 * 109.47008 * 65.43240 * 4 2 1 17 17 C 1.46903 * 111.00133 * 86.56743 * 16 4 2 18 18 C 1.50702 * 109.47058 * 178.26978 * 17 16 4 19 19 O 1.21296 * 119.99843 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99937 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99875 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99829 * 0.02562 * 21 20 18 23 23 C 1.38942 * 119.99969 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00156 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00116 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46868 * 90.00366 * 25 23 21 27 27 H 1.48503 * 109.47028 * 209.99879 * 25 23 21 28 28 H 1.48496 * 109.46867 * 330.00153 * 25 23 21 29 29 H 1.09002 * 109.47084 * 186.63217 * 1 2 3 30 30 H 1.08998 * 109.47070 * 306.63363 * 1 2 3 31 31 H 1.08999 * 109.46773 * 66.63691 * 1 2 3 32 32 H 1.08999 * 109.47128 * 240.00127 * 2 1 3 33 33 H 1.09001 * 109.47197 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47581 * 299.99977 * 3 2 1 35 35 H 1.08999 * 109.46958 * 60.00023 * 3 2 1 36 36 H 1.09001 * 109.46943 * 304.99677 * 6 4 2 37 37 H 1.08994 * 109.47014 * 64.99812 * 6 4 2 38 38 H 1.08999 * 109.47221 * 300.00147 * 7 6 4 39 39 H 1.09004 * 109.47361 * 59.99950 * 7 6 4 40 40 H 0.96999 * 120.00139 * 359.97438 * 8 7 6 41 41 H 1.07997 * 128.63837 * 359.97288 * 12 11 9 42 42 H 1.00905 * 110.99827 * 210.52265 * 16 4 2 43 43 H 1.08998 * 109.46971 * 298.26861 * 17 16 4 44 44 H 1.08996 * 109.46793 * 58.26998 * 17 16 4 45 45 H 0.97000 * 119.99944 * 0.02562 * 20 18 17 46 46 H 0.97003 * 120.00010 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1257 -0.6378 1.2992 6 6 1.4215 -0.0832 2.4948 7 6 2.0253 -0.7207 3.7477 8 7 1.4336 -0.1093 4.9402 9 6 1.8171 -0.5159 6.1667 10 8 2.6532 -1.3897 6.2832 11 6 1.2178 0.1026 7.3738 12 6 1.4912 -0.1910 8.7931 13 7 0.6954 0.6366 9.4164 14 8 0.0759 1.2890 8.6097 15 7 0.3137 1.0560 7.4474 16 7 1.6603 -2.1389 1.1854 17 6 2.6615 -2.9194 0.4462 18 6 2.2603 -4.3720 0.4382 19 8 1.2404 -4.7226 0.9933 20 7 3.0348 -5.2816 -0.1857 21 6 2.6701 -6.6031 -0.1925 22 1 1.7620 -6.9152 0.3018 23 6 3.4683 -7.5408 -0.8361 24 7 4.5731 -7.1609 -1.4379 25 14 2.9710 -9.3414 -0.8460 26 1 2.1232 -9.6142 -2.0343 27 1 4.1880 -10.1907 -0.9007 28 1 2.2067 -9.6506 0.3890 29 1 -0.3633 -1.0208 0.1187 30 1 -0.3633 0.6132 0.8247 31 1 -0.3633 0.4075 -0.9434 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6288 0.9869 2.4958 37 1 0.3436 -0.2445 2.4885 38 1 1.8182 -1.7909 3.7467 39 1 3.1034 -0.5594 3.7540 40 1 0.7664 0.5885 4.8472 41 1 2.1783 -0.9109 9.2126 42 1 1.5176 -2.5170 2.1100 43 1 2.7228 -2.5538 -0.5788 44 1 3.6332 -2.8134 0.9285 45 1 3.8507 -5.0013 -0.6292 46 1 5.1305 -7.8156 -1.8870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755552088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:11 Heat of formation + Delta-G solvation = 35.997995 kcal Electronic energy + Delta-G solvation = -28856.685473 eV Core-core repulsion = 24593.629429 eV Total energy + Delta-G solvation = -4263.056044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.38089 -40.19849 -38.87249 -37.73922 -35.51738 -35.05646 -34.93071 -34.07467 -33.24216 -31.28039 -30.92243 -27.49188 -27.12392 -26.24725 -24.93142 -24.41220 -23.57727 -22.57629 -21.35818 -19.49931 -19.32171 -19.20574 -18.79332 -17.98081 -17.86363 -16.67308 -16.18976 -16.02691 -15.60212 -15.18719 -15.10660 -14.95014 -14.46223 -14.27592 -14.00232 -13.83577 -13.66708 -13.39030 -13.22807 -12.64167 -12.40160 -12.39437 -12.16817 -12.00910 -11.96969 -11.82175 -11.60530 -11.51480 -11.28493 -11.17400 -11.06084 -10.96254 -10.84215 -10.68674 -10.39053 -10.37665 -10.20962 -9.58625 -9.50326 -8.43340 -8.08280 -7.95302 -6.41111 -3.81845 0.27143 0.86950 2.16587 2.50358 2.94450 3.03184 3.18463 3.27049 3.33039 3.47991 3.91228 4.07291 4.27876 4.29075 4.33499 4.48029 4.67478 4.81400 4.89297 5.01263 5.09616 5.17893 5.24767 5.29113 5.33204 5.41727 5.58564 5.67988 5.71126 5.80007 5.81803 5.86554 5.93224 5.97840 6.06855 6.15911 6.26647 6.36659 6.53964 6.84602 7.21113 7.50893 7.55869 7.64167 7.92727 8.06920 8.61709 9.18524 9.54964 10.06226 10.76607 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010413 B = 0.002310 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.288313 B =12119.535058 C =14201.251458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.150 4.150 4 C 0.096 3.904 5 H 0.047 0.953 6 C -0.138 4.138 7 C 0.111 3.889 8 N -0.706 5.706 9 C 0.603 3.397 10 O -0.506 6.506 11 C -0.040 4.040 12 C 0.039 3.961 13 N -0.353 5.353 14 O 0.342 5.658 15 N -0.322 5.322 16 N -0.663 5.663 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.408 0.592 41 H 0.229 0.771 42 H 0.349 0.651 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 21.166 12.090 24.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C -0.207 4.207 4 C -0.015 4.015 5 H 0.065 0.935 6 C -0.176 4.176 7 C -0.012 4.012 8 N -0.358 5.358 9 C 0.384 3.616 10 O -0.378 6.378 11 C -0.205 4.205 12 C -0.146 4.146 13 N -0.076 5.076 14 O 0.116 5.884 15 N -0.042 5.042 16 N -0.298 5.298 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.243 0.757 41 H 0.245 0.755 42 H 0.171 0.829 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.915 21.056 12.157 24.805 hybrid contribution 1.474 -1.165 -0.015 1.879 sum -3.441 19.891 12.142 23.557 Atomic orbital electron populations 1.21787 0.94682 1.03129 1.00307 1.21066 0.96804 0.94698 0.97760 1.21923 1.00789 0.96401 1.01619 1.21485 0.97293 0.88994 0.93685 0.93521 1.22106 1.02361 1.00637 0.92457 1.21672 0.98286 0.98636 0.82569 1.45791 1.43877 1.41115 1.04986 1.16463 0.81883 0.82160 0.81067 1.90904 1.31577 1.29694 1.85671 1.26278 0.99018 0.97888 0.97339 1.27793 0.99479 0.99494 0.87879 1.75096 1.07490 1.06730 1.18260 1.85094 1.48282 1.47146 1.07871 1.75378 1.13474 1.13746 1.01636 1.60149 1.46145 1.00142 1.23360 1.21730 0.93073 0.93646 0.99799 1.19812 0.86264 0.86616 0.84705 1.90524 1.26558 1.80757 1.48971 1.41864 1.22923 1.07162 1.48066 1.19694 1.08467 0.82138 1.32504 0.87946 1.25260 0.95528 1.00578 0.96600 1.69614 1.13495 1.35582 1.35634 0.85861 0.77850 0.81731 0.78874 1.20401 1.20939 1.19425 0.90675 0.93442 0.93701 0.90830 0.92925 0.92663 0.92733 0.90162 0.89516 0.90170 0.90708 0.75661 0.75480 0.82919 0.89603 0.93842 0.77471 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.43 37.16 0.31 -1.18 16 2 C -0.08 -0.86 2.84 -90.62 -0.26 -1.12 16 3 C -0.15 -1.21 8.96 37.16 0.33 -0.88 16 4 C 0.10 1.03 1.81 -67.71 -0.12 0.91 16 5 H 0.05 0.50 7.75 -51.93 -0.40 0.09 16 6 C -0.14 -1.16 4.11 -26.73 -0.11 -1.27 16 7 C 0.11 1.07 5.51 -4.05 -0.02 1.05 16 8 N -0.71 -6.17 5.55 -61.11 -0.34 -6.51 16 9 C 0.60 6.37 7.85 -12.13 -0.10 6.28 16 10 O -0.51 -7.04 17.05 5.37 0.09 -6.94 16 11 C -0.04 -0.35 7.56 -80.06 -0.61 -0.95 16 12 C 0.04 0.29 12.63 -14.29 -0.18 0.11 16 13 N -0.35 -2.85 12.22 30.71 0.38 -2.47 16 14 O 0.34 2.74 11.65 27.26 0.32 3.06 16 15 N -0.32 -2.68 12.13 33.50 0.41 -2.27 16 16 N -0.66 -9.83 5.34 -107.98 -0.58 -10.41 16 17 C 0.05 0.85 5.98 -4.97 -0.03 0.82 16 18 C 0.44 10.28 7.82 -10.99 -0.09 10.20 16 19 O -0.58 -15.70 15.74 5.54 0.09 -15.61 16 20 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 21 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 25 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.07 0.99 7.60 -51.93 -0.39 0.59 16 30 H 0.05 0.43 6.86 -51.93 -0.36 0.07 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.87 7.48 -51.93 -0.39 0.48 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.38 6.48 -51.93 -0.34 0.05 16 36 H 0.08 0.54 6.36 -51.93 -0.33 0.21 16 37 H 0.09 0.76 6.80 -51.93 -0.35 0.41 16 38 H 0.08 0.95 6.43 -51.93 -0.33 0.62 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.41 2.73 8.33 -40.82 -0.34 2.39 16 41 H 0.23 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.35 5.50 6.10 -39.29 -0.24 5.26 16 43 H 0.09 1.36 7.50 -51.93 -0.39 0.97 16 44 H 0.04 0.68 8.01 -51.93 -0.42 0.26 16 45 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -32.61 387.25 -5.49 -38.10 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -6.23 Total: 13.30 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -1.10 Total: 5.97 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.53 Total: -59.86 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: 0.50 Total: -19.49 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.61 -5.49 -38.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755552088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.101 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds