Wall clock time and date at job start Tue Mar 31 2020 23:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47023 * 2 1 4 4 C 1.47145 * 111.00226 * 293.95468 * 3 2 1 5 5 C 1.52827 * 108.60873 * 165.02841 * 4 3 2 6 6 C 1.50994 * 109.97473 * 50.96494 * 5 4 3 7 7 N 1.31775 * 117.75797 * 162.82806 * 6 5 4 8 8 C 1.33266 * 122.53264 * 179.50762 * 7 6 5 9 9 C 1.40710 * 121.15606 * 180.35491 * 8 7 6 10 10 C 1.36089 * 119.75207 * 180.23621 * 9 8 7 11 11 C 1.39332 * 121.06264 * 359.47222 * 10 9 8 12 12 C 1.36289 * 120.81352 * 0.27881 * 11 10 9 13 13 C 1.40023 * 119.63331 * 359.97438 * 12 11 10 14 14 C 1.41701 * 121.57349 * 179.97438 * 13 12 11 15 15 C 1.47669 * 120.93255 * 0.02562 * 14 13 12 16 16 O 1.21609 * 120.00252 * 90.00195 * 15 14 13 17 17 N 1.34786 * 120.00063 * 269.99807 * 15 14 13 18 18 C 1.46498 * 119.99960 * 0.02562 * 17 15 14 19 19 C 1.36652 * 120.00063 * 180.02562 * 17 15 14 20 20 H 1.08001 * 119.99847 * 20.84481 * 19 17 15 21 21 C 1.39191 * 119.99884 * 200.84803 * 19 17 15 22 22 N 1.31273 * 120.00062 * 12.77843 * 21 19 17 23 23 Si 1.86802 * 119.99800 * 192.77338 * 21 19 17 24 24 H 1.48496 * 109.47227 * 85.04324 * 23 21 19 25 25 H 1.48506 * 109.47122 * 205.03824 * 23 21 19 26 26 H 1.48497 * 109.47136 * 325.03768 * 23 21 19 27 27 C 1.38902 * 121.09998 * 342.58743 * 6 5 4 28 28 C 1.46637 * 111.00416 * 171.02138 * 3 2 1 29 29 H 1.09000 * 109.46872 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47092 * 299.99414 * 1 2 3 31 31 H 1.08995 * 109.47364 * 60.00178 * 1 2 3 32 32 H 1.09006 * 109.46822 * 240.00193 * 2 1 3 33 33 H 1.08995 * 109.47364 * 119.99821 * 2 1 3 34 34 H 1.09001 * 109.61250 * 45.29340 * 4 3 2 35 35 H 1.08997 * 109.61568 * 284.76973 * 4 3 2 36 36 H 1.09001 * 109.38750 * 290.80882 * 5 4 3 37 37 H 1.09004 * 109.30456 * 171.06692 * 5 4 3 38 38 H 1.08001 * 120.12666 * 359.68227 * 9 8 7 39 39 H 1.07994 * 119.46937 * 179.75199 * 10 9 8 40 40 H 1.08000 * 119.58670 * 180.29941 * 11 10 9 41 41 H 1.08000 * 120.18612 * 179.97438 * 12 11 10 42 42 H 1.08992 * 109.47423 * 93.33403 * 18 17 15 43 43 H 1.08994 * 109.46793 * 213.33842 * 18 17 15 44 44 H 1.09004 * 109.46727 * 333.33677 * 18 17 15 45 45 H 0.96999 * 119.99631 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.29575 * 55.51670 * 28 3 2 47 47 H 1.08996 * 109.30551 * 296.14102 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6696 2.0681 -1.2554 5 6 1.8585 3.5721 -1.0612 6 6 3.2291 3.8506 -0.4920 7 7 3.6924 5.0809 -0.5816 8 6 4.8849 5.4342 -0.1029 9 6 5.3482 6.7587 -0.2079 10 6 6.5728 7.0870 0.2866 11 6 7.3765 6.1334 0.9080 12 6 6.9586 4.8421 1.0321 13 6 5.7061 4.4684 0.5299 14 6 5.2311 3.1376 0.6362 15 6 6.0454 2.0906 1.2853 16 8 5.9391 1.8911 2.4802 17 7 6.9063 1.3559 0.5534 18 6 7.0347 1.5965 -0.8860 19 6 7.6595 0.3866 1.1539 20 1 7.3504 -0.0271 2.1025 21 6 8.8249 -0.0673 0.5432 22 7 9.3369 0.5949 -0.4680 23 14 9.6606 -1.6189 1.1627 24 1 9.0351 -2.8059 0.5262 25 1 11.1042 -1.5753 0.8173 26 1 9.5068 -1.7091 2.6369 27 6 3.9738 2.8446 0.1103 28 6 3.4697 1.4298 0.2136 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 0.6299 1.8595 -1.5078 35 1 2.3206 1.7178 -2.0564 36 1 1.0988 3.9467 -0.3752 37 1 1.7571 4.0752 -2.0229 38 1 4.7380 7.5101 -0.6870 39 1 6.9255 8.1041 0.2001 40 1 8.3424 6.4212 1.2962 41 1 7.5900 4.1111 1.5152 42 1 7.8476 2.3000 -1.0657 43 1 7.2489 0.6562 -1.3938 44 1 6.1029 2.0125 -1.2693 45 1 10.1493 0.2787 -0.8933 46 1 3.9638 0.8153 -0.5389 47 1 3.7004 1.0365 1.2036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170627233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:32 Heat of formation + Delta-G solvation = 37.319940 kcal Electronic energy + Delta-G solvation = -30387.110982 eV Core-core repulsion = 26534.961525 eV Total energy + Delta-G solvation = -3852.149457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.95675 -38.65706 -38.35836 -36.43724 -34.85176 -33.40313 -32.71967 -31.60654 -31.05442 -29.59124 -28.96434 -26.54198 -25.60685 -24.71811 -24.29507 -22.85168 -22.02677 -21.91101 -20.42733 -19.07329 -17.66640 -17.08187 -17.02875 -16.44962 -15.63419 -15.30758 -15.10925 -14.99279 -14.61947 -14.43130 -14.23997 -13.93391 -13.85186 -13.68238 -13.47170 -13.24303 -12.82562 -12.57256 -12.38318 -12.07220 -11.93200 -11.87001 -11.63355 -11.54243 -11.49379 -11.32480 -11.24119 -10.99400 -10.93462 -10.87385 -10.58317 -10.46350 -10.45047 -9.90597 -9.42799 -9.17550 -8.58380 -8.45452 -8.22524 -7.89343 -7.78571 -6.46746 -4.01576 0.59874 1.08010 2.24173 3.06119 3.11456 3.17376 3.21968 3.59446 3.84328 3.99141 4.26070 4.33432 4.52357 4.78311 4.84363 4.93777 5.00271 5.10092 5.12427 5.18737 5.23838 5.29690 5.38248 5.42475 5.49044 5.49438 5.54154 5.64759 5.68336 5.82148 5.83963 5.90658 5.93249 6.03334 6.10130 6.14892 6.19196 6.24064 6.31794 6.36884 6.61412 6.73325 6.77763 6.83547 7.02476 7.03295 7.10809 7.15082 7.42443 7.92858 8.18410 8.31140 8.99688 9.22506 9.77706 10.55798 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008232 B = 0.005489 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3400.615968 B = 5100.185654 C = 7817.988404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 N -0.532 5.532 4 C 0.046 3.954 5 C -0.060 4.060 6 C 0.176 3.824 7 N -0.488 5.488 8 C 0.138 3.862 9 C -0.105 4.105 10 C -0.098 4.098 11 C -0.129 4.129 12 C -0.071 4.071 13 C -0.085 4.085 14 C -0.012 4.012 15 C 0.474 3.526 16 O -0.576 6.576 17 N -0.423 5.423 18 C 0.112 3.888 19 C -0.313 4.313 20 H 0.103 0.897 21 C 0.035 3.965 22 N -0.873 5.873 23 Si 0.928 3.072 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.267 1.267 27 C -0.117 4.117 28 C 0.099 3.901 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.035 0.965 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.041 0.959 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.023 0.977 45 H 0.271 0.729 46 H 0.053 0.947 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.988 5.228 -5.131 13.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 N -0.256 5.256 4 C -0.083 4.083 5 C -0.098 4.098 6 C 0.026 3.974 7 N -0.198 5.198 8 C 0.015 3.985 9 C -0.123 4.123 10 C -0.118 4.118 11 C -0.147 4.147 12 C -0.089 4.089 13 C -0.087 4.087 14 C -0.024 4.024 15 C 0.261 3.739 16 O -0.461 6.461 17 N -0.139 5.139 18 C -0.032 4.032 19 C -0.440 4.440 20 H 0.121 0.879 21 C -0.170 4.170 22 N -0.511 5.511 23 Si 0.755 3.245 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.192 1.192 27 C -0.120 4.120 28 C -0.029 4.029 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.151 0.849 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.041 0.959 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.500 6.028 -4.692 13.806 hybrid contribution 1.646 -1.704 -0.149 2.374 sum -9.854 4.325 -4.841 11.800 Atomic orbital electron populations 1.21804 0.94757 1.01466 1.02429 1.22088 0.96015 0.88509 1.01350 1.62358 1.12957 1.16004 1.34293 1.22267 1.01535 0.93684 0.90795 1.20471 0.92014 0.95679 1.01602 1.21071 0.95474 0.87665 0.93191 1.67565 1.13670 1.19124 1.19399 1.18663 0.90012 0.93875 0.95963 1.20676 0.96399 0.93992 1.01273 1.20844 0.93960 0.99522 0.97434 1.20886 1.00266 0.93100 1.00475 1.21101 0.94286 0.96900 0.96647 1.18689 0.96271 0.92962 1.00794 1.20700 0.94118 0.94181 0.93391 1.17636 0.85798 0.83667 0.86764 1.90678 1.70969 1.70367 1.14094 1.43471 1.33903 1.29750 1.06825 1.21547 0.97626 1.02472 0.81552 1.19681 1.03771 1.13278 1.07318 0.87892 1.25404 0.95907 0.99196 0.96445 1.69958 1.20700 1.37608 1.22860 0.85903 0.78025 0.81022 0.79589 1.20151 1.20801 1.19196 1.20467 0.94301 0.96803 1.00396 1.20883 0.86775 0.92186 1.03049 0.92313 0.91752 0.92676 0.94648 0.90336 0.89400 0.94094 0.88979 0.89327 0.85068 0.85614 0.85645 0.84877 0.91914 0.90973 0.95889 0.91898 0.92897 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.87 37.16 0.37 -1.00 16 2 C 0.05 0.57 5.66 -3.83 -0.02 0.55 16 3 N -0.53 -7.48 4.69 -236.30 -1.11 -8.59 16 4 C 0.05 0.54 5.43 -3.78 -0.02 0.52 16 5 C -0.06 -0.76 6.17 -27.83 -0.17 -0.93 16 6 C 0.18 3.00 6.68 -82.23 -0.55 2.45 16 7 N -0.49 -8.66 10.13 -7.16 -0.07 -8.73 16 8 C 0.14 2.51 6.62 -84.99 -0.56 1.95 16 9 C -0.10 -1.57 9.99 -39.42 -0.39 -1.97 16 10 C -0.10 -1.32 9.94 -39.95 -0.40 -1.72 16 11 C -0.13 -1.99 9.96 -39.88 -0.40 -2.38 16 12 C -0.07 -1.35 9.42 -39.61 -0.37 -1.73 16 13 C -0.08 -1.70 5.76 -106.59 -0.61 -2.32 16 14 C -0.01 -0.25 3.93 -104.29 -0.41 -0.66 16 15 C 0.47 11.70 4.42 -12.41 -0.05 11.65 16 16 O -0.58 -16.15 16.78 5.27 0.09 -16.06 16 17 N -0.42 -10.62 3.01 -123.36 -0.37 -10.99 16 18 C 0.11 2.55 8.56 59.85 0.51 3.06 16 19 C -0.31 -8.38 9.31 -15.05 -0.14 -8.53 16 20 H 0.10 2.89 7.38 -52.49 -0.39 2.50 16 21 C 0.04 0.90 5.10 -17.44 -0.09 0.81 16 22 N -0.87 -22.37 10.57 55.51 0.59 -21.79 16 23 Si 0.93 19.96 29.57 -169.99 -5.03 14.94 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 C -0.12 -2.21 5.43 -104.02 -0.56 -2.77 16 28 C 0.10 1.72 4.59 -5.19 -0.02 1.70 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.46 6.30 -51.93 -0.33 0.13 16 32 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 33 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 34 H 0.09 0.82 5.98 -51.93 -0.31 0.51 16 35 H 0.04 0.50 8.04 -51.93 -0.42 0.08 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 41 H 0.13 2.84 7.24 -52.49 -0.38 2.46 16 42 H 0.06 1.50 7.50 -51.93 -0.39 1.11 16 43 H 0.07 1.68 7.06 -51.93 -0.37 1.32 16 44 H 0.02 0.47 6.43 -51.93 -0.33 0.14 16 45 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 46 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16 47 H 0.10 1.94 7.45 -51.93 -0.39 1.55 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -30.65 375.67 -10.80 -41.45 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.66 Total: 5.43 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -3.90 Total: -1.33 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.96 Total: -50.09 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.09 Total: -16.06 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.65 -10.80 -41.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170627233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.771 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds