Wall clock time and date at job start Tue Mar 31 2020 23:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47023 * 2 1 4 4 C 1.47145 * 111.00226 * 293.95468 * 3 2 1 5 5 C 1.52827 * 108.60873 * 165.02841 * 4 3 2 6 6 C 1.50994 * 109.97473 * 50.96494 * 5 4 3 7 7 N 1.31775 * 117.75797 * 162.82806 * 6 5 4 8 8 C 1.33266 * 122.53264 * 179.50762 * 7 6 5 9 9 C 1.40710 * 121.15606 * 180.35491 * 8 7 6 10 10 C 1.36089 * 119.75207 * 180.23621 * 9 8 7 11 11 C 1.39332 * 121.06264 * 359.47222 * 10 9 8 12 12 C 1.36289 * 120.81352 * 0.27881 * 11 10 9 13 13 C 1.40023 * 119.63331 * 359.97438 * 12 11 10 14 14 C 1.41701 * 121.57349 * 179.97438 * 13 12 11 15 15 C 1.47669 * 120.93255 * 0.02562 * 14 13 12 16 16 O 1.21609 * 120.00252 * 90.00195 * 15 14 13 17 17 N 1.34786 * 120.00063 * 269.99807 * 15 14 13 18 18 C 1.46498 * 119.99960 * 0.02562 * 17 15 14 19 19 C 1.36652 * 120.00063 * 180.02562 * 17 15 14 20 20 H 1.08001 * 119.99847 * 20.84481 * 19 17 15 21 21 C 1.39191 * 119.99884 * 200.84803 * 19 17 15 22 22 N 1.31273 * 120.00062 * 12.77843 * 21 19 17 23 23 Si 1.86802 * 119.99800 * 192.77338 * 21 19 17 24 24 H 1.48496 * 109.47227 * 85.04324 * 23 21 19 25 25 H 1.48506 * 109.47122 * 205.03824 * 23 21 19 26 26 H 1.48497 * 109.47136 * 325.03768 * 23 21 19 27 27 C 1.38902 * 121.09998 * 342.58743 * 6 5 4 28 28 C 1.46637 * 111.00416 * 171.02138 * 3 2 1 29 29 H 1.09000 * 109.46872 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47092 * 299.99414 * 1 2 3 31 31 H 1.08995 * 109.47364 * 60.00178 * 1 2 3 32 32 H 1.09006 * 109.46822 * 240.00193 * 2 1 3 33 33 H 1.08995 * 109.47364 * 119.99821 * 2 1 3 34 34 H 1.09001 * 109.61250 * 45.29340 * 4 3 2 35 35 H 1.08997 * 109.61568 * 284.76973 * 4 3 2 36 36 H 1.09001 * 109.38750 * 290.80882 * 5 4 3 37 37 H 1.09004 * 109.30456 * 171.06692 * 5 4 3 38 38 H 1.08001 * 120.12666 * 359.68227 * 9 8 7 39 39 H 1.07994 * 119.46937 * 179.75199 * 10 9 8 40 40 H 1.08000 * 119.58670 * 180.29941 * 11 10 9 41 41 H 1.08000 * 120.18612 * 179.97438 * 12 11 10 42 42 H 1.08992 * 109.47423 * 93.33403 * 18 17 15 43 43 H 1.08994 * 109.46793 * 213.33842 * 18 17 15 44 44 H 1.09004 * 109.46727 * 333.33677 * 18 17 15 45 45 H 0.96999 * 119.99631 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.29575 * 55.51670 * 28 3 2 47 47 H 1.08996 * 109.30551 * 296.14102 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6696 2.0681 -1.2554 5 6 1.8585 3.5721 -1.0612 6 6 3.2291 3.8506 -0.4920 7 7 3.6924 5.0809 -0.5816 8 6 4.8849 5.4342 -0.1029 9 6 5.3482 6.7587 -0.2079 10 6 6.5728 7.0870 0.2866 11 6 7.3765 6.1334 0.9080 12 6 6.9586 4.8421 1.0321 13 6 5.7061 4.4684 0.5299 14 6 5.2311 3.1376 0.6362 15 6 6.0454 2.0906 1.2853 16 8 5.9391 1.8911 2.4802 17 7 6.9063 1.3559 0.5534 18 6 7.0347 1.5965 -0.8860 19 6 7.6595 0.3866 1.1539 20 1 7.3504 -0.0271 2.1025 21 6 8.8249 -0.0673 0.5432 22 7 9.3369 0.5949 -0.4680 23 14 9.6606 -1.6189 1.1627 24 1 9.0351 -2.8059 0.5262 25 1 11.1042 -1.5753 0.8173 26 1 9.5068 -1.7091 2.6369 27 6 3.9738 2.8446 0.1103 28 6 3.4697 1.4298 0.2136 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 0.6299 1.8595 -1.5078 35 1 2.3206 1.7178 -2.0564 36 1 1.0988 3.9467 -0.3752 37 1 1.7571 4.0752 -2.0229 38 1 4.7380 7.5101 -0.6870 39 1 6.9255 8.1041 0.2001 40 1 8.3424 6.4212 1.2962 41 1 7.5900 4.1111 1.5152 42 1 7.8476 2.3000 -1.0657 43 1 7.2489 0.6562 -1.3938 44 1 6.1029 2.0125 -1.2693 45 1 10.1493 0.2787 -0.8933 46 1 3.9638 0.8153 -0.5389 47 1 3.7004 1.0365 1.2036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170627233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:31 Heat of formation + Delta-G solvation = 18.209933 kcal Electronic energy + Delta-G solvation = -30387.939654 eV Core-core repulsion = 26534.961525 eV Total energy + Delta-G solvation = -3852.978129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.37592 -40.22620 -39.83687 -37.65568 -36.87434 -34.93334 -33.80772 -33.56163 -32.28459 -30.73367 -30.19652 -28.49150 -27.23005 -26.30109 -25.43421 -24.42475 -23.28979 -23.08114 -21.60679 -20.72444 -19.14025 -18.94603 -18.37229 -18.12259 -17.24902 -16.53975 -16.37093 -16.26792 -16.19965 -15.96862 -15.77081 -15.46436 -15.22886 -14.94557 -14.75714 -14.56905 -14.37551 -14.15791 -13.67784 -13.50940 -13.44122 -13.25144 -13.06022 -12.85659 -12.78283 -12.75707 -12.57839 -12.53365 -12.38183 -12.19336 -12.10521 -11.93712 -11.59993 -11.41008 -11.14625 -11.04010 -10.37929 -9.92437 -9.66198 -9.46706 -9.15634 -8.46284 -6.11098 -0.80911 -0.26617 0.83706 1.28878 1.37012 1.49099 1.72919 1.81933 2.18117 2.72604 2.75386 2.95419 2.99232 3.05092 3.45485 3.57275 3.62040 3.73897 3.95551 4.01488 4.05810 4.14419 4.20754 4.27029 4.30540 4.33713 4.34559 4.47218 4.51766 4.58781 4.62738 4.75105 4.78091 4.84262 4.88557 4.97941 4.99872 5.05359 5.09840 5.13419 5.16739 5.33502 5.35809 5.37479 5.46580 5.48002 5.83726 5.88967 5.90206 6.05672 6.29789 6.79325 6.97201 7.22195 7.79053 8.55713 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008232 B = 0.005489 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3400.615968 B = 5100.185654 C = 7817.988404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.044 3.956 3 N -0.536 5.536 4 C 0.046 3.954 5 C -0.054 4.054 6 C 0.170 3.830 7 N -0.480 5.480 8 C 0.120 3.880 9 C -0.098 4.098 10 C -0.084 4.084 11 C -0.107 4.107 12 C -0.116 4.116 13 C -0.103 4.103 14 C -0.048 4.048 15 C 0.479 3.521 16 O -0.625 6.625 17 N -0.431 5.431 18 C 0.133 3.867 19 C -0.352 4.352 20 H 0.077 0.923 21 C 0.006 3.994 22 N -0.887 5.887 23 Si 0.994 3.006 24 H -0.263 1.263 25 H -0.269 1.269 26 H -0.274 1.274 27 C -0.118 4.118 28 C 0.111 3.889 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.124 0.876 35 H 0.040 0.960 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.165 0.835 39 H 0.178 0.822 40 H 0.152 0.848 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.040 0.960 45 H 0.278 0.722 46 H 0.043 0.957 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.383 7.216 -7.375 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.084 4.084 3 N -0.261 5.261 4 C -0.082 4.082 5 C -0.092 4.092 6 C 0.019 3.981 7 N -0.189 5.189 8 C -0.003 4.003 9 C -0.116 4.116 10 C -0.104 4.104 11 C -0.124 4.124 12 C -0.135 4.135 13 C -0.105 4.105 14 C -0.060 4.060 15 C 0.268 3.732 16 O -0.514 6.514 17 N -0.147 5.147 18 C -0.011 4.011 19 C -0.479 4.479 20 H 0.095 0.905 21 C -0.198 4.198 22 N -0.524 5.524 23 Si 0.816 3.184 24 H -0.188 1.188 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.121 4.121 28 C -0.018 4.018 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.142 0.858 35 H 0.058 0.942 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.182 0.818 39 H 0.195 0.805 40 H 0.170 0.830 41 H 0.111 0.889 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.088 0.912 46 H 0.061 0.939 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.897 8.026 -6.976 16.716 hybrid contribution 2.111 -2.204 0.558 3.103 sum -10.786 5.822 -6.418 13.836 Atomic orbital electron populations 1.21754 0.92079 1.02740 1.02944 1.22201 0.98063 0.87269 1.00829 1.62387 1.10065 1.17583 1.36108 1.22422 1.03505 0.92836 0.89397 1.20633 0.89293 0.96486 1.02796 1.21715 0.96951 0.86841 0.92633 1.67696 1.13238 1.19109 1.18871 1.19123 0.90102 0.94941 0.96156 1.21128 0.97145 0.92901 1.00430 1.21344 0.92778 1.01130 0.95132 1.21293 1.01279 0.91608 0.98271 1.20925 0.94564 0.98223 0.99758 1.18864 0.97106 0.92815 1.01759 1.20481 0.95211 0.94060 0.96257 1.18106 0.85298 0.83587 0.86203 1.90601 1.72434 1.71997 1.16372 1.43602 1.33790 1.29648 1.07638 1.21327 0.97880 1.01495 0.80365 1.19648 1.05503 1.15267 1.07519 0.90484 1.26184 0.95626 1.01659 0.96315 1.70023 1.20929 1.38414 1.23069 0.84948 0.77447 0.77417 0.78560 1.18763 1.19353 1.19938 1.20717 0.93507 0.97982 0.99942 1.20597 0.89380 0.91251 1.00567 0.90741 0.92318 0.90934 0.94123 0.92062 0.85821 0.94201 0.87723 0.86728 0.81774 0.80483 0.82993 0.88936 0.93348 0.91779 0.94186 0.91153 0.93901 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.87 71.98 0.71 -1.56 16 2 C 0.04 1.02 5.66 86.30 0.49 1.51 16 3 N -0.54 -15.05 4.69 -901.52 -4.23 -19.27 16 4 C 0.05 0.98 5.43 86.20 0.47 1.45 16 5 C -0.05 -1.24 6.17 29.88 0.18 -1.05 16 6 C 0.17 5.64 6.68 42.82 0.29 5.93 16 7 N -0.48 -16.28 10.13 -176.56 -1.79 -18.07 16 8 C 0.12 4.25 6.62 40.38 0.27 4.52 16 9 C -0.10 -2.60 9.99 22.37 0.22 -2.38 16 10 C -0.08 -1.96 9.94 22.03 0.22 -1.74 16 11 C -0.11 -3.15 9.96 22.08 0.22 -2.93 16 12 C -0.12 -4.68 9.42 22.25 0.21 -4.47 16 13 C -0.10 -4.32 5.76 -21.14 -0.12 -4.44 16 14 C -0.05 -2.22 3.93 -19.65 -0.08 -2.30 16 15 C 0.48 25.93 4.42 86.73 0.38 26.31 16 16 O -0.63 -38.78 16.78 -4.06 -0.07 -38.85 16 17 N -0.43 -23.45 3.01 -662.44 -1.99 -25.44 16 18 C 0.13 6.42 8.56 127.77 1.09 7.52 16 19 C -0.35 -20.28 9.31 84.17 0.78 -19.50 16 20 H 0.08 4.74 7.38 -2.91 -0.02 4.72 16 21 C 0.01 0.30 5.10 85.01 0.43 0.74 16 22 N -0.89 -46.69 10.57 21.70 0.23 -46.46 16 23 Si 0.99 41.93 29.57 68.60 2.03 43.96 16 24 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 25 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 C -0.12 -4.68 5.43 -19.47 -0.11 -4.78 16 28 C 0.11 4.12 4.59 85.56 0.39 4.51 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 0.95 6.30 -2.39 -0.02 0.93 16 32 H 0.04 0.91 8.12 -2.38 -0.02 0.89 16 33 H 0.06 1.62 8.09 -2.39 -0.02 1.60 16 34 H 0.12 1.80 5.98 -2.39 -0.01 1.78 16 35 H 0.04 0.88 8.04 -2.39 -0.02 0.86 16 36 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 39 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 41 H 0.09 4.41 7.24 -2.91 -0.02 4.38 16 42 H 0.05 2.45 7.50 -2.39 -0.02 2.43 16 43 H 0.06 3.14 7.06 -2.39 -0.02 3.12 16 44 H 0.04 1.76 6.43 -2.38 -0.02 1.74 16 45 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16 46 H 0.04 1.64 8.13 -2.39 -0.02 1.62 16 47 H 0.06 2.65 7.45 -2.39 -0.02 2.63 16 Total: -1.00 -74.02 375.67 1.23 -72.79 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.99 Total: 24.01 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 6.06 Total: 7.34 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -7.78 Total: -109.24 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -0.07 Total: -38.85 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -74.02 1.23 -72.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170627233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.000 kcal (2) G-P(sol) polarization free energy of solvation -74.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds