Wall clock time and date at job start Tue Mar 31 2020 23:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47528 * 2 1 4 4 C 1.50700 * 109.47256 * 239.99596 * 2 1 3 5 5 O 1.21284 * 120.00356 * 268.34945 * 4 2 1 6 6 N 1.34775 * 119.99970 * 88.35042 * 4 2 1 7 7 C 1.46509 * 119.99829 * 356.34073 * 6 4 2 8 8 C 1.50705 * 109.47198 * 90.00083 * 7 6 4 9 9 H 1.07996 * 119.99891 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99727 * 180.02562 * 8 7 6 11 11 N 1.31508 * 120.00019 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99694 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47319 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47215 * 120.00119 * 12 10 8 15 15 H 1.48502 * 109.46867 * 239.99825 * 12 10 8 16 16 C 1.39922 * 120.00333 * 176.33528 * 6 4 2 17 17 C 1.38880 * 120.06853 * 7.26028 * 16 6 4 18 18 C 1.38109 * 119.92976 * 179.79075 * 17 16 6 19 19 C 1.38283 * 120.06998 * 0.47982 * 18 17 16 20 20 C 1.38282 * 120.14253 * 359.75190 * 19 18 17 21 21 C 1.38116 * 120.06876 * 0.02562 * 20 19 18 22 22 N 1.46902 * 109.47190 * 119.99782 * 2 1 3 23 23 C 1.46834 * 111.00186 * 178.93256 * 22 2 1 24 24 C 1.50174 * 110.24261 * 174.69964 * 23 22 2 25 25 C 1.31989 * 122.99400 * 342.90816 * 24 23 22 26 26 C 1.43197 * 118.69780 * 180.33051 * 25 24 23 27 27 N 6.77506 * 113.30888 * 113.41019 * 2 1 3 28 28 C 1.50342 * 122.60906 * 0.31186 * 25 24 23 29 29 C 1.47214 * 110.99800 * 301.95845 * 22 2 1 30 30 H 1.08997 * 109.47054 * 177.97926 * 1 2 3 31 31 H 1.09003 * 109.47460 * 297.97979 * 1 2 3 32 32 H 1.08997 * 109.47310 * 57.98188 * 1 2 3 33 33 H 1.09000 * 109.46757 * 209.99604 * 7 6 4 34 34 H 1.08990 * 109.46853 * 329.99621 * 7 6 4 35 35 H 0.96998 * 120.00026 * 180.02562 * 11 10 8 36 36 H 1.08004 * 120.03102 * 0.02562 * 17 16 6 37 37 H 1.07997 * 119.96685 * 180.23201 * 18 17 16 38 38 H 1.07998 * 119.93340 * 179.72301 * 19 18 17 39 39 H 1.07999 * 119.96886 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.03837 * 179.97438 * 21 20 19 41 41 H 1.09008 * 109.33622 * 294.93250 * 23 22 2 42 42 H 1.08992 * 109.34466 * 54.61508 * 23 22 2 43 43 H 1.08006 * 118.50370 * 162.89115 * 24 23 22 44 44 H 1.08996 * 109.43550 * 103.54839 * 28 25 24 45 45 H 1.09004 * 109.43352 * 223.46016 * 28 25 24 46 46 H 1.09006 * 109.62395 * 286.83029 * 29 22 2 47 47 H 1.09001 * 109.62375 * 47.39569 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.2630 -1.9006 -1.1918 6 7 2.2253 -0.0234 -2.3737 7 6 1.8711 1.3965 -2.4437 8 6 3.0585 2.2310 -2.0379 9 1 3.9842 1.7517 -1.7556 10 6 2.9627 3.6064 -2.0259 11 7 1.8352 4.1900 -2.3692 12 14 4.4347 4.6408 -1.5236 13 1 5.5740 3.7499 -1.1866 14 1 4.8190 5.5332 -2.6466 15 1 4.0812 5.4618 -0.3377 16 6 2.7639 -0.6661 -3.4938 17 6 2.9598 -2.0410 -3.4800 18 6 3.4877 -2.6730 -4.5887 19 6 3.8303 -1.9370 -5.7082 20 6 3.6410 -0.5673 -5.7234 21 6 3.1093 0.0701 -4.6195 22 7 2.0196 -0.6925 1.1995 23 6 3.4872 -0.7342 1.2207 24 6 3.9715 -1.3289 2.5119 25 6 3.2083 -1.4397 3.5831 26 6 3.7673 -2.0155 4.7690 27 7 4.2107 -2.4721 5.7099 28 6 1.7756 -0.9849 3.6076 29 6 1.5096 -0.0525 2.4232 30 1 -0.3633 -1.0270 -0.0362 31 1 -0.3634 0.4821 0.9075 32 1 -0.3634 0.5448 -0.8713 33 1 1.5813 1.6487 -3.4638 34 1 1.0386 1.5969 -1.7694 35 1 1.7679 5.1576 -2.3611 36 1 2.6961 -2.6157 -2.6044 37 1 3.6368 -3.7426 -4.5800 38 1 4.2471 -2.4329 -6.5723 39 1 3.9100 0.0048 -6.5990 40 1 2.9620 1.1399 -4.6318 41 1 3.8431 -1.3408 0.3879 42 1 3.8787 0.2783 1.1230 43 1 4.9906 -1.6824 2.5663 44 1 1.1186 -1.8520 3.5407 45 1 1.5799 -0.4526 4.5385 46 1 2.0232 0.8958 2.5817 47 1 0.4377 0.1203 2.3265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272680233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:24 Heat of formation + Delta-G solvation = 65.635704 kcal Electronic energy + Delta-G solvation = -29817.976421 eV Core-core repulsion = 25967.054827 eV Total energy + Delta-G solvation = -3850.921594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.59068 -39.18270 -37.78074 -36.59947 -35.34593 -34.21042 -32.80295 -31.11610 -30.63029 -30.30627 -29.09922 -27.37601 -25.44652 -24.39882 -23.48474 -22.86519 -21.88773 -20.93912 -19.81844 -18.89978 -17.47229 -16.93779 -16.83772 -16.44949 -15.66252 -15.40605 -14.97245 -14.88839 -14.60164 -14.39630 -14.04697 -13.78198 -13.70880 -13.51134 -13.36028 -13.24075 -12.80703 -12.75778 -12.71405 -12.32700 -12.24734 -12.10367 -11.92210 -11.84032 -11.54949 -11.48627 -11.22911 -11.12446 -11.10583 -10.84539 -10.64779 -10.57378 -10.34951 -10.16423 -9.25903 -9.11190 -8.80411 -8.64864 -8.36852 -8.15504 -7.25010 -6.37305 -4.46801 1.25467 1.83007 1.98458 2.62040 3.07681 3.09350 3.19896 3.23725 3.32103 3.43801 3.82579 3.98683 4.17444 4.45973 4.62687 4.85916 4.96167 5.03730 5.11145 5.27706 5.32254 5.43818 5.48671 5.50002 5.57794 5.60052 5.69174 5.72305 5.82729 5.83867 5.96614 6.02605 6.04182 6.08264 6.13712 6.19390 6.34468 6.42792 6.50676 6.71615 6.82694 6.93952 7.01933 7.05131 7.08278 7.12245 7.25541 7.44221 7.55151 7.78700 7.79592 8.04235 8.58130 8.73524 9.22118 10.68563 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008556 B = 0.004368 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.760764 B = 6409.081542 C = 8244.552495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.063 3.937 3 H 0.095 0.905 4 C 0.524 3.476 5 O -0.525 6.525 6 N -0.535 5.535 7 C 0.225 3.775 8 C -0.542 4.542 9 H 0.063 0.937 10 C 0.071 3.929 11 N -0.885 5.885 12 Si 0.894 3.106 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.281 1.281 16 C 0.169 3.831 17 C -0.180 4.180 18 C -0.109 4.109 19 C -0.162 4.162 20 C -0.106 4.106 21 C -0.145 4.145 22 N -0.511 5.511 23 C 0.069 3.931 24 C -0.057 4.057 25 C -0.069 4.069 26 C 0.254 3.746 27 N -0.438 5.438 28 C -0.062 4.062 29 C 0.046 3.954 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.267 0.733 36 H 0.179 0.821 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.138 0.862 41 H 0.107 0.893 42 H 0.067 0.933 43 H 0.122 0.878 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.047 0.953 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.778 -6.165 2.614 6.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.048 4.048 3 H 0.112 0.888 4 C 0.313 3.687 5 O -0.403 6.403 6 N -0.254 5.254 7 C 0.106 3.894 8 C -0.581 4.581 9 H 0.081 0.919 10 C -0.134 4.134 11 N -0.523 5.523 12 Si 0.721 3.279 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.207 1.207 16 C 0.073 3.927 17 C -0.200 4.200 18 C -0.128 4.128 19 C -0.181 4.181 20 C -0.125 4.125 21 C -0.165 4.165 22 N -0.237 5.237 23 C -0.058 4.058 24 C -0.080 4.080 25 C -0.073 4.073 26 C -0.061 4.061 27 N -0.114 5.114 28 C -0.100 4.100 29 C -0.082 4.082 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.195 0.805 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.156 0.844 41 H 0.125 0.875 42 H 0.085 0.915 43 H 0.140 0.860 44 H 0.107 0.893 45 H 0.098 0.902 46 H 0.065 0.935 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.310 -7.717 4.136 8.853 hybrid contribution 1.113 1.900 -0.317 2.224 sum -0.198 -5.817 3.819 6.962 Atomic orbital electron populations 1.21833 0.92025 1.02999 1.03015 1.21680 0.97237 0.97961 0.87898 0.88753 1.20456 0.77265 0.86689 0.84245 1.90261 1.51325 1.15232 1.83510 1.46029 1.56870 1.13412 1.09073 1.19767 0.97140 0.72806 0.99695 1.21395 0.98247 0.91079 1.47353 0.91893 1.24896 0.96137 0.97690 0.94634 1.69911 1.25032 1.10645 1.46679 0.86486 0.82584 0.80294 0.78496 1.19567 1.20624 1.20710 1.18077 0.95589 0.91632 0.87375 1.22761 1.01833 0.93808 1.01573 1.21029 0.99224 0.99165 0.93397 1.20983 1.04118 0.94393 0.98606 1.20861 0.99426 0.94422 0.97741 1.21126 1.01765 1.00944 0.92699 1.62222 1.07788 1.52727 1.00943 1.21219 0.88199 1.00662 0.95723 1.22968 0.98947 0.93218 0.92877 1.17384 0.97096 1.04975 0.87866 1.26309 0.93206 0.93233 0.93321 1.81210 1.08911 1.10082 1.11203 1.20377 0.90999 1.00221 0.98432 1.22335 1.01772 0.95315 0.88800 0.91459 0.91209 0.91017 0.93585 0.93324 0.92290 0.80467 0.86847 0.87236 0.86583 0.84443 0.87523 0.91547 0.86007 0.89281 0.90221 0.93509 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.81 37.15 0.33 -1.56 16 2 C 0.06 0.98 1.60 -68.87 -0.11 0.87 16 3 H 0.09 1.64 6.32 -51.93 -0.33 1.31 16 4 C 0.52 9.52 5.84 -10.99 -0.06 9.46 16 5 O -0.52 -10.06 11.88 5.55 0.07 -9.99 16 6 N -0.53 -10.45 2.68 -114.73 -0.31 -10.76 16 7 C 0.22 4.77 4.09 -5.19 -0.02 4.75 16 8 C -0.54 -12.60 8.55 -34.44 -0.29 -12.89 16 9 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -22.14 13.29 55.43 0.74 -21.41 16 12 Si 0.89 19.01 29.54 -169.99 -5.02 13.98 16 13 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 16 C 0.17 3.29 6.49 -83.69 -0.54 2.75 16 17 C -0.18 -3.29 9.04 -39.39 -0.36 -3.65 16 18 C -0.11 -1.74 10.04 -39.61 -0.40 -2.13 16 19 C -0.16 -2.44 10.04 -39.55 -0.40 -2.84 16 20 C -0.11 -1.70 10.04 -39.61 -0.40 -2.10 16 21 C -0.14 -2.71 9.15 -39.39 -0.36 -3.07 16 22 N -0.51 -6.94 4.30 -229.54 -0.99 -7.92 16 23 C 0.07 0.93 5.16 -5.27 -0.03 0.90 16 24 C -0.06 -0.65 9.61 -36.48 -0.35 -1.00 16 25 C -0.07 -0.76 5.73 -104.79 -0.60 -1.36 16 26 C 0.25 3.17 15.16 -22.48 -0.34 2.83 16 27 N -0.44 -6.40 18.54 41.84 0.78 -5.62 16 28 C -0.06 -0.59 6.00 -28.02 -0.17 -0.76 16 29 C 0.05 0.49 5.40 -3.62 -0.02 0.47 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.77 6.01 -51.93 -0.31 0.45 16 32 H 0.07 1.01 6.85 -51.93 -0.36 0.66 16 33 H 0.05 1.05 6.55 -51.93 -0.34 0.71 16 34 H 0.05 1.03 5.33 -51.93 -0.28 0.75 16 35 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 36 H 0.18 3.38 4.55 -56.14 -0.26 3.13 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.14 2.74 6.27 -52.49 -0.33 2.41 16 41 H 0.11 1.63 6.46 -51.92 -0.34 1.30 16 42 H 0.07 0.93 8.12 -51.93 -0.42 0.50 16 43 H 0.12 1.20 7.97 -52.48 -0.42 0.79 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.51 8.07 -51.93 -0.42 0.09 16 47 H 0.09 0.89 5.64 -51.93 -0.29 0.59 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -26.76 380.62 -9.39 -36.14 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.17 Total: 7.57 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -4.22 Total: -7.74 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.22 Total: -45.71 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.07 Total: -9.99 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -26.76 -9.39 -36.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272680233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.780 kcal (2) G-P(sol) polarization free energy of solvation -26.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds