Wall clock time and date at job start Tue Mar 31 2020 23:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47528 * 2 1 4 4 C 1.50700 * 109.47256 * 239.99596 * 2 1 3 5 5 O 1.21284 * 120.00356 * 268.34945 * 4 2 1 6 6 N 1.34775 * 119.99970 * 88.35042 * 4 2 1 7 7 C 1.46509 * 119.99829 * 356.34073 * 6 4 2 8 8 C 1.50705 * 109.47198 * 90.00083 * 7 6 4 9 9 H 1.07996 * 119.99891 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99727 * 180.02562 * 8 7 6 11 11 N 1.31508 * 120.00019 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99694 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47319 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47215 * 120.00119 * 12 10 8 15 15 H 1.48502 * 109.46867 * 239.99825 * 12 10 8 16 16 C 1.39922 * 120.00333 * 176.33528 * 6 4 2 17 17 C 1.38880 * 120.06853 * 7.26028 * 16 6 4 18 18 C 1.38109 * 119.92976 * 179.79075 * 17 16 6 19 19 C 1.38283 * 120.06998 * 0.47982 * 18 17 16 20 20 C 1.38282 * 120.14253 * 359.75190 * 19 18 17 21 21 C 1.38116 * 120.06876 * 0.02562 * 20 19 18 22 22 N 1.46902 * 109.47190 * 119.99782 * 2 1 3 23 23 C 1.46834 * 111.00186 * 178.93256 * 22 2 1 24 24 C 1.50174 * 110.24261 * 174.69964 * 23 22 2 25 25 C 1.31989 * 122.99400 * 342.90816 * 24 23 22 26 26 C 1.43197 * 118.69780 * 180.33051 * 25 24 23 27 27 N 6.77506 * 113.30888 * 113.41019 * 2 1 3 28 28 C 1.50342 * 122.60906 * 0.31186 * 25 24 23 29 29 C 1.47214 * 110.99800 * 301.95845 * 22 2 1 30 30 H 1.08997 * 109.47054 * 177.97926 * 1 2 3 31 31 H 1.09003 * 109.47460 * 297.97979 * 1 2 3 32 32 H 1.08997 * 109.47310 * 57.98188 * 1 2 3 33 33 H 1.09000 * 109.46757 * 209.99604 * 7 6 4 34 34 H 1.08990 * 109.46853 * 329.99621 * 7 6 4 35 35 H 0.96998 * 120.00026 * 180.02562 * 11 10 8 36 36 H 1.08004 * 120.03102 * 0.02562 * 17 16 6 37 37 H 1.07997 * 119.96685 * 180.23201 * 18 17 16 38 38 H 1.07998 * 119.93340 * 179.72301 * 19 18 17 39 39 H 1.07999 * 119.96886 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.03837 * 179.97438 * 21 20 19 41 41 H 1.09008 * 109.33622 * 294.93250 * 23 22 2 42 42 H 1.08992 * 109.34466 * 54.61508 * 23 22 2 43 43 H 1.08006 * 118.50370 * 162.89115 * 24 23 22 44 44 H 1.08996 * 109.43550 * 103.54839 * 28 25 24 45 45 H 1.09004 * 109.43352 * 223.46016 * 28 25 24 46 46 H 1.09006 * 109.62395 * 286.83029 * 29 22 2 47 47 H 1.09001 * 109.62375 * 47.39569 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.2630 -1.9006 -1.1918 6 7 2.2253 -0.0234 -2.3737 7 6 1.8711 1.3965 -2.4437 8 6 3.0585 2.2310 -2.0379 9 1 3.9842 1.7517 -1.7556 10 6 2.9627 3.6064 -2.0259 11 7 1.8352 4.1900 -2.3692 12 14 4.4347 4.6408 -1.5236 13 1 5.5740 3.7499 -1.1866 14 1 4.8190 5.5332 -2.6466 15 1 4.0812 5.4618 -0.3377 16 6 2.7639 -0.6661 -3.4938 17 6 2.9598 -2.0410 -3.4800 18 6 3.4877 -2.6730 -4.5887 19 6 3.8303 -1.9370 -5.7082 20 6 3.6410 -0.5673 -5.7234 21 6 3.1093 0.0701 -4.6195 22 7 2.0196 -0.6925 1.1995 23 6 3.4872 -0.7342 1.2207 24 6 3.9715 -1.3289 2.5119 25 6 3.2083 -1.4397 3.5831 26 6 3.7673 -2.0155 4.7690 27 7 4.2107 -2.4721 5.7099 28 6 1.7756 -0.9849 3.6076 29 6 1.5096 -0.0525 2.4232 30 1 -0.3633 -1.0270 -0.0362 31 1 -0.3634 0.4821 0.9075 32 1 -0.3634 0.5448 -0.8713 33 1 1.5813 1.6487 -3.4638 34 1 1.0386 1.5969 -1.7694 35 1 1.7679 5.1576 -2.3611 36 1 2.6961 -2.6157 -2.6044 37 1 3.6368 -3.7426 -4.5800 38 1 4.2471 -2.4329 -6.5723 39 1 3.9100 0.0048 -6.5990 40 1 2.9620 1.1399 -4.6318 41 1 3.8431 -1.3408 0.3879 42 1 3.8787 0.2783 1.1230 43 1 4.9906 -1.6824 2.5663 44 1 1.1186 -1.8520 3.5407 45 1 1.5799 -0.4526 4.5385 46 1 2.0232 0.8958 2.5817 47 1 0.4377 0.1203 2.3265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272680233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:23 Heat of formation + Delta-G solvation = 52.892981 kcal Electronic energy + Delta-G solvation = -29818.528986 eV Core-core repulsion = 25967.054827 eV Total energy + Delta-G solvation = -3851.474160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.96116 -40.29195 -39.05066 -37.70360 -36.89632 -35.29721 -34.59753 -32.06008 -31.82449 -31.61726 -30.43898 -29.05677 -26.53227 -25.55040 -25.11166 -24.01961 -23.21149 -22.24229 -20.82066 -20.24978 -18.75346 -18.61474 -18.04212 -17.92567 -16.97772 -16.58177 -16.41827 -16.02929 -15.95928 -15.63475 -15.27206 -15.02340 -14.77236 -14.72926 -14.57091 -14.48193 -14.19042 -14.18161 -13.89999 -13.69564 -13.44378 -13.29312 -13.13739 -13.03939 -12.87531 -12.81176 -12.66724 -12.55896 -12.24174 -12.23944 -12.13588 -11.92628 -11.78434 -11.53887 -10.84032 -10.64373 -10.06377 -10.02895 -9.71790 -9.29777 -8.72424 -8.20972 -6.37060 0.30171 0.47626 0.63223 1.38235 1.43926 1.51685 1.61761 1.70680 2.05998 2.34386 2.38766 2.83078 2.85432 3.07779 3.10066 3.49109 3.80008 4.03249 4.18248 4.20774 4.22017 4.24654 4.33085 4.45237 4.46766 4.52105 4.62331 4.64485 4.70080 4.72039 4.74397 4.76449 4.87910 5.00247 5.03958 5.10138 5.11744 5.19170 5.32215 5.32486 5.49217 5.52411 5.65680 5.68192 5.76185 5.85632 5.94702 5.97483 6.04332 6.38627 6.44815 6.49954 6.76549 7.24481 7.35501 8.82514 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008556 B = 0.004368 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.760764 B = 6409.081542 C = 8244.552495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.070 3.930 3 H 0.072 0.928 4 C 0.519 3.481 5 O -0.536 6.536 6 N -0.542 5.542 7 C 0.243 3.757 8 C -0.540 4.540 9 H 0.048 0.952 10 C 0.034 3.966 11 N -0.911 5.911 12 Si 0.947 3.053 13 H -0.274 1.274 14 H -0.281 1.281 15 H -0.275 1.275 16 C 0.141 3.859 17 C -0.195 4.195 18 C -0.106 4.106 19 C -0.152 4.152 20 C -0.104 4.104 21 C -0.167 4.167 22 N -0.514 5.514 23 C 0.073 3.927 24 C -0.059 4.059 25 C -0.060 4.060 26 C 0.275 3.725 27 N -0.474 5.474 28 C -0.058 4.058 29 C 0.043 3.957 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.025 0.975 34 H 0.048 0.952 35 H 0.269 0.731 36 H 0.169 0.831 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.115 0.885 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.135 0.865 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.046 0.954 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.569 -6.943 2.864 7.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.041 4.041 3 H 0.090 0.910 4 C 0.310 3.690 5 O -0.416 6.416 6 N -0.262 5.262 7 C 0.123 3.877 8 C -0.578 4.578 9 H 0.067 0.933 10 C -0.167 4.167 11 N -0.550 5.550 12 Si 0.773 3.227 13 H -0.198 1.198 14 H -0.207 1.207 15 H -0.200 1.200 16 C 0.046 3.954 17 C -0.214 4.214 18 C -0.125 4.125 19 C -0.171 4.171 20 C -0.122 4.122 21 C -0.188 4.188 22 N -0.240 5.240 23 C -0.054 4.054 24 C -0.082 4.082 25 C -0.064 4.064 26 C -0.039 4.039 27 N -0.150 5.150 28 C -0.096 4.096 29 C -0.084 4.084 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.185 0.815 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.159 0.841 40 H 0.133 0.867 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.153 0.847 44 H 0.116 0.884 45 H 0.121 0.879 46 H 0.065 0.935 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.100 -8.507 4.392 9.637 hybrid contribution 1.072 2.062 -0.483 2.374 sum -0.028 -6.444 3.910 7.538 Atomic orbital electron populations 1.21821 0.90285 1.03311 1.03882 1.21582 0.98501 0.96338 0.87686 0.90997 1.20955 0.76758 0.86727 0.84561 1.90249 1.51865 1.15712 1.83765 1.46008 1.57465 1.12729 1.09952 1.19389 0.96366 0.73810 0.98136 1.21448 0.98184 0.91437 1.46751 0.93325 1.25457 0.98013 0.98539 0.94738 1.69981 1.26363 1.10899 1.47737 0.85674 0.80000 0.78851 0.78212 1.19844 1.20699 1.20000 1.18384 0.96866 0.92469 0.87707 1.22749 1.03036 0.93209 1.02450 1.21399 0.97705 1.00732 0.92632 1.21392 1.02542 0.93805 0.99382 1.21199 0.98128 0.95405 0.97506 1.21107 1.03655 1.00040 0.93956 1.62270 1.07746 1.52765 1.01227 1.21068 0.88374 0.99860 0.96117 1.22885 0.99753 0.93589 0.91973 1.17493 0.97736 1.04201 0.86962 1.26372 0.92229 0.92329 0.92934 1.81239 1.10046 1.11289 1.12418 1.20449 0.89912 1.00515 0.98768 1.22494 1.02671 0.95456 0.87764 0.91161 0.88387 0.92286 0.95674 0.93382 0.92149 0.81500 0.83906 0.83396 0.84052 0.86688 0.89870 0.92559 0.84734 0.88366 0.87861 0.93547 0.87122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 8.81 71.98 0.63 -2.92 16 2 C 0.07 2.21 1.60 44.17 0.07 2.28 16 3 H 0.07 2.59 6.32 -2.39 -0.02 2.58 16 4 C 0.52 19.57 5.84 87.66 0.51 20.08 16 5 O -0.54 -21.16 11.88 -3.04 -0.04 -21.20 16 6 N -0.54 -22.22 2.68 -635.29 -1.70 -23.92 16 7 C 0.24 10.82 4.09 85.63 0.35 11.17 16 8 C -0.54 -25.99 8.55 25.60 0.22 -25.77 16 9 H 0.05 2.44 7.81 -2.91 -0.02 2.42 16 10 C 0.03 1.66 5.46 84.66 0.46 2.13 16 11 N -0.91 -46.39 13.29 21.45 0.28 -46.11 16 12 Si 0.95 39.33 29.54 68.60 2.03 41.35 16 13 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 14 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 15 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 16 C 0.14 5.68 6.49 38.15 0.25 5.92 16 17 C -0.19 -7.16 9.04 22.39 0.20 -6.96 16 18 C -0.11 -3.17 10.04 22.25 0.22 -2.95 16 19 C -0.15 -4.18 10.04 22.29 0.22 -3.95 16 20 C -0.10 -3.22 10.04 22.25 0.22 -2.99 16 21 C -0.17 -6.42 9.15 22.39 0.20 -6.22 16 22 N -0.51 -13.72 4.30 -880.12 -3.78 -17.50 16 23 C 0.07 2.00 5.16 85.40 0.44 2.44 16 24 C -0.06 -1.28 9.61 24.62 0.24 -1.05 16 25 C -0.06 -1.21 5.73 -19.63 -0.11 -1.32 16 26 C 0.28 6.41 15.16 88.33 1.34 7.75 16 27 N -0.47 -13.24 18.54 19.00 0.35 -12.89 16 28 C -0.06 -0.96 6.00 29.76 0.18 -0.78 16 29 C 0.04 0.85 5.40 86.27 0.47 1.31 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.10 1.97 6.01 -2.39 -0.01 1.96 16 32 H 0.06 1.69 6.85 -2.39 -0.02 1.68 16 33 H 0.03 1.22 6.55 -2.39 -0.02 1.21 16 34 H 0.05 2.13 5.33 -2.39 -0.01 2.12 16 35 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 36 H 0.17 6.50 4.55 -60.72 -0.28 6.23 16 37 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 38 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 39 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 40 H 0.12 4.87 6.27 -2.91 -0.02 4.85 16 41 H 0.08 2.66 6.46 -2.38 -0.02 2.64 16 42 H 0.06 1.63 8.12 -2.39 -0.02 1.61 16 43 H 0.13 2.54 7.97 -2.91 -0.02 2.52 16 44 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.05 0.94 8.07 -2.38 -0.02 0.92 16 47 H 0.11 1.80 5.64 -2.39 -0.01 1.79 16 Total: -1.00 -58.96 380.62 4.00 -54.96 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.74 Total: 27.13 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 6.12 Total: -1.83 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -4.85 Total: -100.42 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.04 Total: -21.20 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.35 kcal Total: -58.96 4.00 -54.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272680233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.854 kcal (2) G-P(sol) polarization free energy of solvation -58.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds