Wall clock time and date at job start Tue Mar 31 2020 22:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 N 1.46496 * 109.47194 * 120.00051 * 2 1 3 5 5 C 1.34778 * 119.99951 * 274.99836 * 4 2 1 6 6 O 1.21589 * 119.99852 * 0.02562 * 5 4 2 7 7 N 1.34779 * 120.00377 * 180.02562 * 5 4 2 8 8 C 1.46489 * 120.00205 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.47382 * 180.02562 * 8 7 5 10 10 O 1.21289 * 119.99608 * 359.97438 * 9 8 7 11 11 N 1.34769 * 120.00331 * 179.97438 * 9 8 7 12 12 C 1.37097 * 120.00276 * 179.97438 * 11 9 8 13 13 H 1.07997 * 119.99616 * 0.02562 * 12 11 9 14 14 C 1.38948 * 120.00556 * 179.97438 * 12 11 9 15 15 N 1.31417 * 119.99809 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00366 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46620 * 90.00393 * 16 14 12 18 18 H 1.48497 * 109.47157 * 210.00078 * 16 14 12 19 19 H 1.48495 * 109.47211 * 330.00551 * 16 14 12 20 20 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 21 21 N 1.31128 * 126.55294 * 104.70919 * 20 2 1 22 22 C 1.34496 * 105.61150 * 179.91440 * 21 20 2 23 23 C 1.50701 * 126.28604 * 180.12672 * 22 21 20 24 24 C 1.53000 * 109.47206 * 180.24311 * 23 22 21 25 25 C 1.53004 * 109.47079 * 300.24875 * 23 22 21 26 26 C 1.52998 * 109.46940 * 60.24014 * 23 22 21 27 27 N 1.29941 * 107.42777 * 0.35635 * 22 21 20 28 28 O 1.21302 * 110.25244 * 359.77196 * 27 22 21 29 29 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 30 30 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 31 31 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 32 32 H 0.96995 * 120.00444 * 95.00053 * 4 2 1 33 33 H 0.97003 * 119.99282 * 359.97438 * 7 5 4 34 34 H 1.09002 * 109.47460 * 299.99607 * 8 7 5 35 35 H 1.09003 * 109.47399 * 59.99730 * 8 7 5 36 36 H 0.97002 * 120.00191 * 359.97438 * 11 9 8 37 37 H 0.96989 * 120.00088 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.46909 * 60.00622 * 24 23 22 39 39 H 1.09004 * 109.46914 * 180.02562 * 24 23 22 40 40 H 1.08992 * 109.46712 * 300.00034 * 24 23 22 41 41 H 1.08997 * 109.47390 * 59.99802 * 25 23 22 42 42 H 1.08999 * 109.47014 * 180.02562 * 25 23 22 43 43 H 1.09007 * 109.46966 * 299.99522 * 25 23 22 44 44 H 1.09004 * 109.46843 * 60.00438 * 26 23 22 45 45 H 1.09004 * 109.47208 * 180.02562 * 26 23 22 46 46 H 1.08997 * 109.47620 * 300.00254 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3571 6 8 1.8575 1.1614 2.4118 7 7 2.5968 -0.6534 3.4575 8 6 2.7362 0.0773 4.7194 9 6 3.2541 -0.8543 5.7849 10 8 3.4836 -2.0146 5.5164 11 7 3.4621 -0.3982 7.0358 12 6 3.9327 -1.2458 8.0052 13 1 4.1371 -2.2790 7.7661 14 6 4.1477 -0.7755 9.2948 15 7 3.8995 0.4818 9.5856 16 14 4.7896 -1.9303 10.6154 17 1 6.2742 -1.8974 10.6226 18 1 4.2785 -1.4990 11.9412 19 1 4.3264 -3.3125 10.3320 20 6 2.0323 -0.7104 -1.2305 21 7 2.5448 -0.1516 -2.3004 22 6 2.8502 -1.1669 -3.1280 23 6 3.4710 -1.0466 -4.4959 24 6 3.6456 -2.4409 -5.1012 25 6 2.5610 -0.2095 -5.3971 26 6 4.8367 -0.3670 -4.3781 27 7 2.5071 -2.2702 -2.5335 28 8 2.0352 -2.0300 -1.4422 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.2490 -1.6317 1.1526 33 1 2.8275 -1.5946 3.4139 34 1 3.4368 0.9017 4.5866 35 1 1.7653 0.4706 5.0208 36 1 3.2789 0.5299 7.2505 37 1 4.0492 0.8101 10.4859 38 1 2.6726 -2.9249 -5.1852 39 1 4.0951 -2.3538 -6.0904 40 1 4.2939 -3.0370 -4.4591 41 1 2.4367 0.7838 -4.9659 42 1 3.0099 -0.1229 -6.3866 43 1 1.5880 -0.6936 -5.4811 44 1 5.4851 -0.9633 -3.7360 45 1 5.2856 -0.2796 -5.3675 46 1 4.7124 0.6263 -3.9469 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346266487.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:27 Heat of formation + Delta-G solvation = -34.715647 kcal Electronic energy + Delta-G solvation = -28689.735391 eV Core-core repulsion = 24423.612973 eV Total energy + Delta-G solvation = -4266.122418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -46.79615 -41.35085 -40.07664 -38.77968 -37.46301 -36.20928 -35.79873 -35.28457 -33.39484 -33.13813 -31.40739 -28.96330 -28.37061 -28.28416 -26.48983 -25.72102 -25.67288 -23.28650 -22.03006 -21.35803 -20.61642 -20.14986 -19.79031 -19.27418 -18.57323 -17.48127 -17.44649 -16.89732 -16.56353 -16.38334 -16.02328 -16.00678 -15.74484 -15.35063 -15.22919 -15.06900 -14.87134 -14.42778 -13.92800 -13.72609 -13.58272 -13.52928 -13.50648 -13.24448 -13.14570 -12.89913 -12.74276 -12.69310 -12.62326 -12.54282 -12.43776 -12.31250 -12.12023 -12.01311 -11.83413 -11.55245 -11.51169 -11.10775 -10.57534 -10.53170 -10.09705 -9.98282 -8.49298 -5.99151 -0.09611 1.00408 1.37626 1.39842 1.45209 1.52191 1.57130 1.92062 2.05852 2.28379 2.43751 2.82895 3.03448 3.18215 3.26975 3.54848 3.83704 3.88413 3.90742 4.03159 4.12286 4.23976 4.46101 4.48915 4.50627 4.60814 4.63364 4.66208 4.72629 4.76118 4.77207 4.87471 4.87716 4.98629 5.15269 5.17029 5.21865 5.25962 5.29308 5.30318 5.40531 5.78433 5.94475 6.50370 6.88585 7.00003 7.05825 7.39502 7.48513 7.97398 8.67479 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023634 B = 0.001775 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.458638 B =15772.225903 C =16266.902789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.268 3.732 3 H 0.127 0.873 4 N -0.734 5.734 5 C 0.717 3.283 6 O -0.616 6.616 7 N -0.721 5.721 8 C 0.142 3.858 9 C 0.433 3.567 10 O -0.625 6.625 11 N -0.559 5.559 12 C -0.337 4.337 13 H 0.086 0.914 14 C -0.010 4.010 15 N -0.915 5.915 16 Si 0.996 3.004 17 H -0.271 1.271 18 H -0.272 1.272 19 H -0.271 1.271 20 C 0.180 3.820 21 N -0.477 5.477 22 C 0.178 3.822 23 C 0.017 3.983 24 C -0.135 4.135 25 C -0.133 4.133 26 C -0.136 4.136 27 N -0.393 5.393 28 O 0.078 5.922 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.413 0.587 33 H 0.411 0.589 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.399 0.601 37 H 0.279 0.721 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.095 0.905 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.193 -0.371 -28.298 28.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.160 3.840 3 H 0.145 0.855 4 N -0.392 5.392 5 C 0.416 3.584 6 O -0.496 6.496 7 N -0.378 5.378 8 C 0.014 3.986 9 C 0.220 3.780 10 O -0.513 6.513 11 N -0.195 5.195 12 C -0.466 4.466 13 H 0.104 0.896 14 C -0.211 4.211 15 N -0.555 5.555 16 Si 0.819 3.181 17 H -0.197 1.197 18 H -0.197 1.197 19 H -0.195 1.195 20 C -0.042 4.042 21 N -0.211 5.211 22 C -0.095 4.095 23 C 0.015 3.985 24 C -0.193 4.193 25 C -0.191 4.191 26 C -0.194 4.194 27 N -0.101 5.101 28 O 0.021 5.979 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.249 0.751 33 H 0.249 0.751 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.234 0.766 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.114 0.886 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.043 -0.412 -28.821 29.106 hybrid contribution 0.377 -0.830 1.315 1.600 sum -3.665 -1.242 -27.505 27.776 Atomic orbital electron populations 1.22240 0.90428 1.04405 1.04627 1.19168 0.95934 0.94891 0.73993 0.85532 1.44869 1.72228 1.14463 1.07610 1.15632 0.78010 0.84434 0.80289 1.90921 1.58487 1.15212 1.85027 1.44669 1.70138 1.15059 1.07963 1.20629 1.02888 0.93263 0.81868 1.20466 0.84245 0.89020 0.84271 1.90476 1.59067 1.20087 1.81683 1.41825 1.56830 1.13010 1.07826 1.19721 1.42306 0.94726 0.89839 0.89631 1.26099 0.96959 0.98103 0.99945 1.69674 1.47964 1.15181 1.22687 0.84885 0.78433 0.77899 0.76874 1.19687 1.19682 1.19518 1.28949 0.95779 0.81433 0.97993 1.71837 1.16211 1.31037 1.02010 1.26426 0.99519 0.82926 1.00671 1.19291 0.96067 0.99009 0.84087 1.21823 1.02360 0.93200 1.01932 1.21845 0.98456 0.99141 0.99684 1.21860 0.93429 1.00194 1.03881 1.74643 1.16348 1.24395 0.94698 1.85283 1.58464 1.26792 1.27364 0.90191 0.89304 0.90415 0.75105 0.75147 0.88757 0.88437 0.76628 0.91109 0.92640 0.88701 0.93079 0.92111 0.88700 0.92867 0.93433 0.88575 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.47 71.98 0.68 -1.71 16 2 C 0.27 5.02 3.12 44.25 0.14 5.16 16 3 H 0.13 2.66 7.58 -2.39 -0.02 2.64 16 4 N -0.73 -15.36 5.07 -461.41 -2.34 -17.70 16 5 C 0.72 20.34 8.53 179.05 1.53 21.87 16 6 O -0.62 -20.93 16.01 -4.00 -0.06 -20.99 16 7 N -0.72 -22.05 5.53 -482.30 -2.67 -24.72 16 8 C 0.14 4.90 6.15 85.64 0.53 5.43 16 9 C 0.43 19.36 7.85 87.66 0.69 20.05 16 10 O -0.63 -31.51 15.24 -3.06 -0.05 -31.56 16 11 N -0.56 -27.47 5.29 -306.99 -1.62 -29.09 16 12 C -0.34 -18.30 9.68 84.04 0.81 -17.48 16 13 H 0.09 4.90 7.16 -2.91 -0.02 4.88 16 14 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 15 N -0.92 -48.05 13.05 21.66 0.28 -47.76 16 16 Si 1.00 41.44 29.55 68.60 2.03 43.47 16 17 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 19 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 20 C 0.18 3.60 7.26 88.38 0.64 4.24 16 21 N -0.48 -10.39 11.55 -303.19 -3.50 -13.89 16 22 C 0.18 3.67 6.40 138.46 0.89 4.56 16 23 C 0.02 0.25 0.99 -52.93 -0.05 0.20 16 24 C -0.14 -1.67 7.97 71.98 0.57 -1.10 16 25 C -0.13 -1.51 8.46 71.98 0.61 -0.90 16 26 C -0.14 -1.75 8.46 71.98 0.61 -1.14 16 27 N -0.39 -8.88 11.47 -60.32 -0.69 -9.57 16 28 O 0.08 1.64 11.13 74.79 0.83 2.48 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.41 7.25 8.46 -92.71 -0.78 6.46 16 33 H 0.41 12.40 7.45 -92.71 -0.69 11.71 16 34 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.40 18.80 7.90 -92.71 -0.73 18.07 16 37 H 0.28 13.75 8.31 -92.72 -0.77 12.98 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 42 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.05 0.70 8.14 -2.38 -0.02 0.69 16 45 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -67.45 395.90 -0.85 -68.31 By element: Atomic # 1 Polarization: 43.11 SS G_CDS: -1.17 Total: 41.94 kcal Atomic # 6 Polarization: 31.00 SS G_CDS: 8.11 Total: 39.11 kcal Atomic # 7 Polarization: -132.20 SS G_CDS: -10.54 Total: -142.74 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: 0.72 Total: -50.08 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -67.45 -0.85 -68.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346266487.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.591 kcal (2) G-P(sol) polarization free energy of solvation -67.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds