Wall clock time and date at job start Tue Mar 31 2020 22:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47104 * 2 1 4 4 N 1.46497 * 109.46820 * 240.00641 * 2 1 3 5 5 C 1.34778 * 120.00413 * 84.99868 * 4 2 1 6 6 O 1.21580 * 119.99676 * 359.97438 * 5 4 2 7 7 N 1.34776 * 119.99886 * 180.02562 * 5 4 2 8 8 C 1.46500 * 119.99856 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47396 * 179.97438 * 8 7 5 10 10 O 1.21294 * 119.99702 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00371 * 179.97438 * 9 8 7 12 12 C 1.37099 * 120.00324 * 179.97438 * 11 9 8 13 13 H 1.08002 * 119.99415 * 0.02562 * 12 11 9 14 14 C 1.38945 * 120.00315 * 180.02562 * 12 11 9 15 15 N 1.31419 * 119.99874 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00399 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46849 * 359.97438 * 16 14 12 18 18 H 1.48487 * 109.47455 * 119.99757 * 16 14 12 19 19 H 1.48504 * 109.46918 * 240.00138 * 16 14 12 20 20 C 1.50691 * 109.47278 * 120.00283 * 2 1 3 21 21 N 1.31138 * 126.55417 * 254.99944 * 20 2 1 22 22 C 1.34495 * 105.61509 * 179.97438 * 21 20 2 23 23 C 1.50700 * 126.28274 * 179.97438 * 22 21 20 24 24 C 1.53001 * 109.47002 * 60.00309 * 23 22 21 25 25 C 1.53003 * 109.46681 * 180.02562 * 23 22 21 26 26 C 1.52995 * 109.47323 * 300.00157 * 23 22 21 27 27 N 1.29942 * 107.42747 * 359.97438 * 22 21 20 28 28 O 1.21306 * 110.25137 * 0.02562 * 27 22 21 29 29 H 1.09005 * 109.46748 * 299.99849 * 1 2 3 30 30 H 1.08996 * 109.47636 * 59.99528 * 1 2 3 31 31 H 1.08997 * 109.47350 * 179.97438 * 1 2 3 32 32 H 0.97012 * 119.99791 * 264.99812 * 4 2 1 33 33 H 0.96998 * 120.00320 * 359.97438 * 7 5 4 34 34 H 1.09003 * 109.47106 * 299.99928 * 8 7 5 35 35 H 1.09004 * 109.47300 * 59.99438 * 8 7 5 36 36 H 0.96998 * 119.99927 * 0.02562 * 11 9 8 37 37 H 0.96999 * 119.99778 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.47090 * 59.99531 * 24 23 22 39 39 H 1.08998 * 109.46995 * 179.97438 * 24 23 22 40 40 H 1.09000 * 109.47167 * 300.00007 * 24 23 22 41 41 H 1.08995 * 109.47502 * 60.00197 * 25 23 22 42 42 H 1.09006 * 109.46694 * 180.02562 * 25 23 22 43 43 H 1.08997 * 109.47052 * 299.99827 * 25 23 22 44 44 H 1.09003 * 109.47116 * 60.00441 * 26 23 22 45 45 H 1.09006 * 109.47155 * 179.97438 * 26 23 22 46 46 H 1.09004 * 109.47279 * 299.99873 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3572 6 8 1.8574 1.1615 -2.4118 7 7 2.5956 -0.6535 -3.4578 8 6 2.7361 0.0775 -4.7196 9 6 3.2524 -0.8545 -5.7854 10 8 3.4802 -2.0153 -5.5174 11 7 3.4600 -0.3985 -7.0364 12 6 3.9303 -1.2462 -8.0059 13 1 4.1339 -2.2796 -7.7670 14 6 4.1449 -0.7759 -9.2956 15 7 3.8976 0.4817 -9.5861 16 14 4.7849 -1.9311 -10.6167 17 1 4.9823 -3.2843 -10.0377 18 1 3.8021 -2.0061 -11.7273 19 1 6.0797 -1.4213 -11.1351 20 6 2.0323 -0.7104 1.2303 21 7 2.5498 -0.1520 2.2981 22 6 2.8507 -1.1669 3.1277 23 6 3.4724 -1.0466 4.4952 24 6 2.5635 -0.2088 5.3967 25 6 3.6469 -2.4410 5.1005 26 6 4.8386 -0.3682 4.3764 27 7 2.5069 -2.2702 2.5335 28 8 2.0348 -2.0300 1.4422 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 2.2490 -1.6318 -1.1527 33 1 2.8263 -1.5947 -3.4143 34 1 1.7657 0.4723 -5.0207 35 1 3.4378 0.9009 -4.5863 36 1 3.2775 0.5298 -7.2508 37 1 4.0470 0.8099 -10.4865 38 1 1.5902 -0.6921 5.4813 39 1 3.0130 -0.1221 6.3859 40 1 2.4396 0.7845 4.9653 41 1 4.2946 -3.0375 4.4581 42 1 4.0962 -2.3539 6.0898 43 1 2.6738 -2.9247 5.1850 44 1 4.7147 0.6252 3.9450 45 1 5.2881 -0.2808 5.3656 46 1 5.4861 -0.9651 3.7342 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346266488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:32 Heat of formation + Delta-G solvation = -9.889556 kcal Electronic energy + Delta-G solvation = -28688.948915 eV Core-core repulsion = 24423.903037 eV Total energy + Delta-G solvation = -4265.045878 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.95387 -40.12503 -38.32587 -38.12172 -36.45753 -34.99900 -34.45605 -33.72669 -32.27022 -31.39518 -30.49857 -27.82275 -27.75858 -27.46251 -25.13620 -24.92024 -24.36392 -22.42798 -20.91154 -19.90260 -19.59972 -18.74387 -18.42448 -18.09794 -17.63463 -16.39971 -15.82937 -15.62360 -15.59304 -15.14942 -14.77311 -14.66260 -14.51169 -14.34277 -14.25405 -13.97260 -13.48460 -13.39134 -12.94906 -12.92940 -12.70493 -12.51709 -12.21965 -12.15599 -12.09423 -12.01266 -11.93291 -11.81443 -11.64561 -11.60000 -11.36636 -11.15802 -11.15110 -10.41972 -10.36164 -10.32202 -10.17756 -9.66106 -9.48686 -8.77233 -8.65060 -8.11480 -6.52824 -3.94848 0.74593 1.84381 2.34754 2.48663 3.09305 3.19018 3.22021 3.24622 3.28751 3.61838 3.72913 4.06058 4.24296 4.27586 4.40007 4.51067 4.65702 4.73038 4.86114 4.89632 5.13966 5.15911 5.16127 5.18854 5.30239 5.30932 5.37874 5.39570 5.44958 5.48651 5.59188 5.74345 5.79275 5.83849 5.85271 5.87001 5.96159 6.04473 6.15012 6.64276 6.86381 7.45134 7.81384 7.91063 8.05755 8.43276 8.61109 9.03469 9.37865 9.85528 10.64039 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023634 B = 0.001775 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.426342 B =15771.967391 C =16266.047718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.264 3.736 3 H 0.135 0.865 4 N -0.748 5.748 5 C 0.712 3.288 6 O -0.590 6.590 7 N -0.719 5.719 8 C 0.128 3.872 9 C 0.428 3.572 10 O -0.598 6.598 11 N -0.549 5.549 12 C -0.305 4.305 13 H 0.106 0.894 14 C 0.026 3.974 15 N -0.894 5.894 16 Si 0.932 3.068 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.175 3.825 21 N -0.464 5.464 22 C 0.181 3.819 23 C 0.023 3.977 24 C -0.138 4.138 25 C -0.140 4.140 26 C -0.139 4.139 27 N -0.376 5.376 28 O 0.081 5.919 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.403 0.597 33 H 0.409 0.591 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.396 0.604 37 H 0.274 0.726 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.154 -0.347 27.089 27.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.156 3.844 3 H 0.152 0.848 4 N -0.406 5.406 5 C 0.412 3.588 6 O -0.468 6.468 7 N -0.376 5.376 8 C 0.000 4.000 9 C 0.213 3.787 10 O -0.484 6.484 11 N -0.183 5.183 12 C -0.434 4.434 13 H 0.124 0.876 14 C -0.177 4.177 15 N -0.534 5.534 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.047 4.047 21 N -0.197 5.197 22 C -0.092 4.092 23 C 0.022 3.978 24 C -0.196 4.196 25 C -0.198 4.198 26 C -0.197 4.197 27 N -0.082 5.082 28 O 0.022 5.978 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.238 0.762 33 H 0.246 0.754 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.981 -0.386 27.584 27.873 hybrid contribution 0.365 -0.832 -1.045 1.385 sum -3.616 -1.219 26.539 26.812 Atomic orbital electron populations 1.22285 0.92035 1.03665 1.04373 1.19100 0.94857 0.95617 0.74817 0.84795 1.45019 1.73149 1.14108 1.08344 1.15663 0.78422 0.84821 0.79927 1.90931 1.57341 1.14039 1.84537 1.44753 1.69655 1.15052 1.08187 1.20829 1.02309 0.94305 0.82577 1.19745 0.85959 0.88875 0.84097 1.90500 1.58353 1.18444 1.81139 1.41788 1.56127 1.13062 1.07356 1.19778 1.40267 0.94951 0.88416 0.87617 1.25328 0.97275 0.96606 0.98525 1.69624 1.47832 1.14076 1.21868 0.85756 0.78300 0.80060 0.79964 1.19148 1.20607 1.20625 1.28931 0.96125 0.81512 0.98091 1.71824 1.15713 1.30599 1.01589 1.25827 1.00180 0.83418 0.99788 1.19029 0.95605 0.98037 0.85173 1.21863 0.98752 1.00091 0.98910 1.21844 1.02807 0.94145 1.00982 1.21873 0.93944 1.01206 1.02711 1.74651 1.15498 1.23807 0.94294 1.85301 1.58335 1.26743 1.27407 0.90772 0.89290 0.91387 0.76249 0.75380 0.89756 0.89832 0.76999 0.91629 0.92468 0.91077 0.91268 0.91896 0.91145 0.91973 0.91260 0.91060 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.47 37.16 0.35 -1.00 16 2 C 0.26 2.60 3.12 -69.09 -0.22 2.39 16 3 H 0.13 1.45 7.58 -51.93 -0.39 1.06 16 4 N -0.75 -8.20 5.07 -59.82 -0.30 -8.51 16 5 C 0.71 10.45 8.53 -86.92 -0.74 9.71 16 6 O -0.59 -10.30 16.01 5.30 0.08 -10.22 16 7 N -0.72 -11.31 5.53 -66.41 -0.37 -11.67 16 8 C 0.13 2.26 6.15 -5.19 -0.03 2.23 16 9 C 0.43 9.54 7.85 -10.99 -0.09 9.46 16 10 O -0.60 -14.95 15.24 5.55 0.08 -14.87 16 11 N -0.55 -13.33 5.29 -10.97 -0.06 -13.39 16 12 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 13 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 14 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 15 N -0.89 -23.59 13.05 55.50 0.72 -22.87 16 16 Si 0.93 20.35 29.55 -169.99 -5.02 15.32 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 C 0.18 1.82 7.26 -13.05 -0.09 1.72 16 21 N -0.46 -5.19 11.55 -9.87 -0.11 -5.31 16 22 C 0.18 1.93 6.40 -156.38 -1.00 0.93 16 23 C 0.02 0.18 0.99 -155.66 -0.15 0.03 16 24 C -0.14 -0.90 8.46 37.16 0.31 -0.58 16 25 C -0.14 -0.97 7.97 37.16 0.30 -0.67 16 26 C -0.14 -0.99 8.45 37.15 0.31 -0.68 16 27 N -0.38 -4.34 11.47 30.90 0.35 -3.98 16 28 O 0.08 0.88 11.13 18.09 0.20 1.08 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.40 3.75 8.46 -40.81 -0.35 3.41 16 33 H 0.41 6.30 7.45 -40.82 -0.30 6.00 16 34 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.40 9.24 7.90 -40.82 -0.32 8.92 16 37 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -31.74 395.90 -6.54 -38.27 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -6.79 Total: 14.39 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: -1.29 Total: 15.78 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: 0.24 Total: -65.73 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.37 Total: -24.01 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.74 -6.54 -38.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346266488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.384 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds