Wall clock time and date at job start Tue Mar 31 2020 22:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47104 * 2 1 4 4 N 1.46497 * 109.46820 * 240.00641 * 2 1 3 5 5 C 1.34778 * 120.00413 * 84.99868 * 4 2 1 6 6 O 1.21580 * 119.99676 * 359.97438 * 5 4 2 7 7 N 1.34776 * 119.99886 * 180.02562 * 5 4 2 8 8 C 1.46500 * 119.99856 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47396 * 179.97438 * 8 7 5 10 10 O 1.21294 * 119.99702 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00371 * 179.97438 * 9 8 7 12 12 C 1.37099 * 120.00324 * 179.97438 * 11 9 8 13 13 H 1.08002 * 119.99415 * 0.02562 * 12 11 9 14 14 C 1.38945 * 120.00315 * 180.02562 * 12 11 9 15 15 N 1.31419 * 119.99874 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00399 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46849 * 359.97438 * 16 14 12 18 18 H 1.48487 * 109.47455 * 119.99757 * 16 14 12 19 19 H 1.48504 * 109.46918 * 240.00138 * 16 14 12 20 20 C 1.50691 * 109.47278 * 120.00283 * 2 1 3 21 21 N 1.31138 * 126.55417 * 254.99944 * 20 2 1 22 22 C 1.34495 * 105.61509 * 179.97438 * 21 20 2 23 23 C 1.50700 * 126.28274 * 179.97438 * 22 21 20 24 24 C 1.53001 * 109.47002 * 60.00309 * 23 22 21 25 25 C 1.53003 * 109.46681 * 180.02562 * 23 22 21 26 26 C 1.52995 * 109.47323 * 300.00157 * 23 22 21 27 27 N 1.29942 * 107.42747 * 359.97438 * 22 21 20 28 28 O 1.21306 * 110.25137 * 0.02562 * 27 22 21 29 29 H 1.09005 * 109.46748 * 299.99849 * 1 2 3 30 30 H 1.08996 * 109.47636 * 59.99528 * 1 2 3 31 31 H 1.08997 * 109.47350 * 179.97438 * 1 2 3 32 32 H 0.97012 * 119.99791 * 264.99812 * 4 2 1 33 33 H 0.96998 * 120.00320 * 359.97438 * 7 5 4 34 34 H 1.09003 * 109.47106 * 299.99928 * 8 7 5 35 35 H 1.09004 * 109.47300 * 59.99438 * 8 7 5 36 36 H 0.96998 * 119.99927 * 0.02562 * 11 9 8 37 37 H 0.96999 * 119.99778 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.47090 * 59.99531 * 24 23 22 39 39 H 1.08998 * 109.46995 * 179.97438 * 24 23 22 40 40 H 1.09000 * 109.47167 * 300.00007 * 24 23 22 41 41 H 1.08995 * 109.47502 * 60.00197 * 25 23 22 42 42 H 1.09006 * 109.46694 * 180.02562 * 25 23 22 43 43 H 1.08997 * 109.47052 * 299.99827 * 25 23 22 44 44 H 1.09003 * 109.47116 * 60.00441 * 26 23 22 45 45 H 1.09006 * 109.47155 * 179.97438 * 26 23 22 46 46 H 1.09004 * 109.47279 * 299.99873 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3572 6 8 1.8574 1.1615 -2.4118 7 7 2.5956 -0.6535 -3.4578 8 6 2.7361 0.0775 -4.7196 9 6 3.2524 -0.8545 -5.7854 10 8 3.4802 -2.0153 -5.5174 11 7 3.4600 -0.3985 -7.0364 12 6 3.9303 -1.2462 -8.0059 13 1 4.1339 -2.2796 -7.7670 14 6 4.1449 -0.7759 -9.2956 15 7 3.8976 0.4817 -9.5861 16 14 4.7849 -1.9311 -10.6167 17 1 4.9823 -3.2843 -10.0377 18 1 3.8021 -2.0061 -11.7273 19 1 6.0797 -1.4213 -11.1351 20 6 2.0323 -0.7104 1.2303 21 7 2.5498 -0.1520 2.2981 22 6 2.8507 -1.1669 3.1277 23 6 3.4724 -1.0466 4.4952 24 6 2.5635 -0.2088 5.3967 25 6 3.6469 -2.4410 5.1005 26 6 4.8386 -0.3682 4.3764 27 7 2.5069 -2.2702 2.5335 28 8 2.0348 -2.0300 1.4422 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 2.2490 -1.6318 -1.1527 33 1 2.8263 -1.5947 -3.4143 34 1 1.7657 0.4723 -5.0207 35 1 3.4378 0.9009 -4.5863 36 1 3.2775 0.5298 -7.2508 37 1 4.0470 0.8099 -10.4865 38 1 1.5902 -0.6921 5.4813 39 1 3.0130 -0.1221 6.3859 40 1 2.4396 0.7845 4.9653 41 1 4.2946 -3.0375 4.4581 42 1 4.0962 -2.3539 6.0898 43 1 2.6738 -2.9247 5.1850 44 1 4.7147 0.6252 3.9450 45 1 5.2881 -0.2808 5.3656 46 1 5.4861 -0.9651 3.7342 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346266488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:31 Heat of formation + Delta-G solvation = -34.816728 kcal Electronic energy + Delta-G solvation = -28690.029838 eV Core-core repulsion = 24423.903037 eV Total energy + Delta-G solvation = -4266.126801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.79518 -41.35190 -40.07806 -38.77973 -37.46304 -36.21088 -35.79796 -35.28552 -33.39578 -33.13815 -31.40745 -28.96456 -28.37032 -28.28440 -26.49196 -25.72073 -25.67401 -23.28641 -22.03020 -21.35959 -20.61548 -20.15111 -19.79147 -19.27401 -18.57341 -17.48235 -17.44874 -16.89812 -16.56688 -16.38406 -16.02455 -16.00353 -15.74540 -15.34981 -15.22909 -15.07074 -14.87198 -14.42627 -13.93078 -13.72570 -13.58238 -13.53705 -13.50730 -13.24443 -13.14551 -12.90661 -12.74420 -12.69315 -12.62133 -12.54275 -12.42802 -12.31215 -12.10793 -12.01340 -11.83400 -11.56277 -11.51237 -11.10785 -10.57565 -10.53316 -10.09772 -9.98320 -8.49626 -5.99415 -0.09683 1.00427 1.36242 1.39930 1.45249 1.52170 1.58444 1.91797 2.05853 2.28232 2.43725 2.82878 3.03381 3.17942 3.26910 3.54855 3.83723 3.88411 3.90718 4.03164 4.12308 4.23877 4.46070 4.48897 4.50549 4.60848 4.63385 4.66206 4.72625 4.76099 4.77188 4.87499 4.87695 4.98635 5.15289 5.17045 5.21908 5.25968 5.29234 5.30301 5.40605 5.78401 5.94470 6.50180 6.88572 6.99977 7.05772 7.39467 7.48404 7.97245 8.67389 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023634 B = 0.001775 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.426342 B =15771.967391 C =16266.047718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.267 3.733 3 H 0.127 0.873 4 N -0.734 5.734 5 C 0.717 3.283 6 O -0.616 6.616 7 N -0.721 5.721 8 C 0.142 3.858 9 C 0.433 3.567 10 O -0.625 6.625 11 N -0.560 5.560 12 C -0.336 4.336 13 H 0.086 0.914 14 C -0.011 4.011 15 N -0.915 5.915 16 Si 0.996 3.004 17 H -0.271 1.271 18 H -0.271 1.271 19 H -0.272 1.272 20 C 0.180 3.820 21 N -0.478 5.478 22 C 0.178 3.822 23 C 0.017 3.983 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.136 4.136 27 N -0.393 5.393 28 O 0.078 5.922 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.413 0.587 33 H 0.411 0.589 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.399 0.601 37 H 0.279 0.721 38 H 0.052 0.948 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.095 0.905 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 -0.368 28.314 28.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.160 3.840 3 H 0.145 0.855 4 N -0.392 5.392 5 C 0.416 3.584 6 O -0.496 6.496 7 N -0.378 5.378 8 C 0.013 3.987 9 C 0.220 3.780 10 O -0.513 6.513 11 N -0.195 5.195 12 C -0.465 4.465 13 H 0.104 0.896 14 C -0.211 4.211 15 N -0.555 5.555 16 Si 0.819 3.181 17 H -0.195 1.195 18 H -0.197 1.197 19 H -0.197 1.197 20 C -0.041 4.041 21 N -0.211 5.211 22 C -0.095 4.095 23 C 0.015 3.985 24 C -0.191 4.191 25 C -0.193 4.193 26 C -0.194 4.194 27 N -0.101 5.101 28 O 0.021 5.979 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.249 0.751 33 H 0.249 0.751 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.234 0.766 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.114 0.886 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.037 -0.413 28.838 29.123 hybrid contribution 0.369 -0.824 -1.322 1.601 sum -3.668 -1.237 27.517 27.788 Atomic orbital electron populations 1.22241 0.90425 1.04407 1.04627 1.19166 0.95940 0.94893 0.73994 0.85532 1.44876 1.72232 1.14462 1.07611 1.15628 0.78014 0.84431 0.80286 1.90919 1.58474 1.15219 1.85028 1.44670 1.70173 1.15035 1.07957 1.20631 1.02899 0.93252 0.81870 1.20468 0.84216 0.89025 0.84272 1.90479 1.59067 1.20055 1.81707 1.41830 1.56867 1.13003 1.07820 1.19759 1.42231 0.94697 0.89824 0.89635 1.26100 0.96973 0.98099 0.99953 1.69685 1.48084 1.15152 1.22620 0.84827 0.78055 0.77874 0.77319 1.19524 1.19659 1.19747 1.28946 0.95736 0.81441 0.98025 1.71840 1.16164 1.31054 1.02042 1.26426 0.99535 0.82936 1.00645 1.19290 0.96053 0.99010 0.84100 1.21844 0.98468 0.99132 0.99680 1.21824 1.02366 0.93199 1.01926 1.21861 0.93425 1.00201 1.03877 1.74646 1.16382 1.24388 0.94667 1.85282 1.58455 1.26789 1.27377 0.89294 0.90200 0.90412 0.75105 0.75148 0.88428 0.88751 0.76629 0.91114 0.92860 0.88699 0.92112 0.93077 0.88702 0.92643 0.92263 0.88575 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.47 71.98 0.68 -1.71 16 2 C 0.27 5.02 3.12 44.24 0.14 5.16 16 3 H 0.13 2.66 7.58 -2.39 -0.02 2.64 16 4 N -0.73 -15.36 5.07 -461.44 -2.34 -17.71 16 5 C 0.72 20.34 8.53 179.05 1.53 21.87 16 6 O -0.62 -20.93 16.01 -3.97 -0.06 -20.99 16 7 N -0.72 -22.05 5.53 -482.30 -2.67 -24.72 16 8 C 0.14 4.90 6.15 85.63 0.53 5.43 16 9 C 0.43 19.37 7.85 87.66 0.69 20.06 16 10 O -0.63 -31.53 15.24 -3.07 -0.05 -31.57 16 11 N -0.56 -27.49 5.29 -306.99 -1.62 -29.11 16 12 C -0.34 -18.26 9.68 84.04 0.81 -17.45 16 13 H 0.09 4.92 7.16 -2.91 -0.02 4.90 16 14 C -0.01 -0.55 5.50 84.92 0.47 -0.08 16 15 N -0.92 -48.07 13.05 21.66 0.28 -47.78 16 16 Si 1.00 41.46 29.55 68.60 2.03 43.49 16 17 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 20 C 0.18 3.60 7.26 88.38 0.64 4.25 16 21 N -0.48 -10.39 11.55 -303.18 -3.50 -13.90 16 22 C 0.18 3.67 6.40 138.46 0.89 4.56 16 23 C 0.02 0.25 0.99 -52.93 -0.05 0.20 16 24 C -0.13 -1.51 8.46 71.98 0.61 -0.90 16 25 C -0.14 -1.67 7.97 71.98 0.57 -1.10 16 26 C -0.14 -1.75 8.45 71.98 0.61 -1.14 16 27 N -0.39 -8.88 11.47 -60.30 -0.69 -9.57 16 28 O 0.08 1.64 11.13 74.81 0.83 2.48 16 29 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.41 7.25 8.46 -92.70 -0.78 6.46 16 33 H 0.41 12.40 7.45 -92.71 -0.69 11.71 16 34 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 36 H 0.40 18.80 7.90 -92.71 -0.73 18.07 16 37 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 38 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 43 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -67.55 395.90 -0.85 -68.40 By element: Atomic # 1 Polarization: 43.01 SS G_CDS: -1.17 Total: 41.85 kcal Atomic # 6 Polarization: 31.03 SS G_CDS: 8.11 Total: 39.14 kcal Atomic # 7 Polarization: -132.24 SS G_CDS: -10.54 Total: -142.78 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: 0.72 Total: -50.09 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -67.55 -0.85 -68.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346266488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.582 kcal (2) G-P(sol) polarization free energy of solvation -67.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds