Wall clock time and date at job start Tue Mar 31 2020 23:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46905 * 109.47552 * 2 1 4 4 C 1.47136 * 110.99899 * 293.95791 * 3 2 1 5 5 C 1.52828 * 108.60798 * 164.99254 * 4 3 2 6 6 C 1.50987 * 109.97548 * 50.97078 * 5 4 3 7 7 N 1.31706 * 117.77884 * 162.83790 * 6 5 4 8 8 C 1.33232 * 122.50658 * 179.51568 * 7 6 5 9 9 C 1.40734 * 121.16496 * 180.34811 * 8 7 6 10 10 C 1.36050 * 119.75754 * 180.22818 * 9 8 7 11 11 C 1.39353 * 121.07299 * 359.48228 * 10 9 8 12 12 C 1.36252 * 120.82073 * 0.26952 * 11 10 9 13 13 C 1.40081 * 119.63219 * 359.97438 * 12 11 10 14 14 C 1.41592 * 121.57539 * 179.97438 * 13 12 11 15 15 C 1.47911 * 120.92470 * 0.02562 * 14 13 12 16 16 O 1.21546 * 120.00138 * 89.99641 * 15 14 13 17 17 N 1.34775 * 119.99984 * 269.99826 * 15 14 13 18 18 C 1.46498 * 120.00450 * 179.97438 * 17 15 14 19 19 C 1.50701 * 109.47478 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99765 * 359.97438 * 19 18 17 21 21 C 1.37873 * 119.99794 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00158 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99659 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47048 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47039 * 119.99752 * 23 21 19 26 26 H 1.48490 * 109.47009 * 239.99732 * 23 21 19 27 27 C 1.39022 * 121.09237 * 342.59379 * 6 5 4 28 28 C 1.46641 * 110.99751 * 171.01599 * 3 2 1 29 29 H 1.08994 * 109.47535 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47130 * 300.00079 * 1 2 3 31 31 H 1.08996 * 109.47241 * 59.99324 * 1 2 3 32 32 H 1.09002 * 109.47130 * 239.99920 * 2 1 3 33 33 H 1.08996 * 109.47241 * 120.00676 * 2 1 3 34 34 H 1.08997 * 109.61439 * 45.24959 * 4 3 2 35 35 H 1.09003 * 109.61245 * 284.72922 * 4 3 2 36 36 H 1.09003 * 109.38769 * 290.81714 * 5 4 3 37 37 H 1.09001 * 109.30389 * 171.07556 * 5 4 3 38 38 H 1.08004 * 120.11450 * 359.70368 * 9 8 7 39 39 H 1.08000 * 119.46629 * 179.75215 * 10 9 8 40 40 H 1.08001 * 119.59214 * 180.29003 * 11 10 9 41 41 H 1.08004 * 120.18614 * 179.97438 * 12 11 10 42 42 H 0.97008 * 119.99774 * 359.97438 * 17 15 14 43 43 H 1.08997 * 109.47069 * 300.00732 * 18 17 15 44 44 H 1.08997 * 109.46438 * 59.99901 * 18 17 15 45 45 H 0.96998 * 119.99575 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.30425 * 55.55458 * 28 3 2 47 47 H 1.08998 * 109.30996 * 296.15772 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6696 2.0681 -1.2553 5 6 1.8579 3.5722 -1.0609 6 6 3.2281 3.8512 -0.4915 7 7 3.6910 5.0811 -0.5804 8 6 4.8832 5.4337 -0.1015 9 6 5.3470 6.7584 -0.2055 10 6 6.5712 7.0860 0.2894 11 6 7.3749 6.1318 0.9104 12 6 6.9571 4.8408 1.0339 13 6 5.7041 4.4672 0.5312 14 6 5.2294 3.1374 0.6367 15 6 6.0450 2.0884 1.2864 16 8 5.9388 1.8885 2.4806 17 7 6.9060 1.3542 0.5542 18 6 7.7143 0.3156 1.1978 19 6 8.5865 -0.3532 0.1667 20 1 8.5427 -0.0365 -0.8649 21 6 9.4394 -1.3699 0.5402 22 7 9.4923 -1.7559 1.7963 23 14 10.5211 -2.1984 -0.7378 24 1 10.2760 -1.5837 -2.0672 25 1 11.9483 -2.0226 -0.3673 26 1 10.1993 -3.6469 -0.7947 27 6 3.9738 2.8445 0.1111 28 6 3.4698 1.4295 0.2138 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.6302 1.8589 -1.5081 35 1 2.3211 1.7182 -2.0562 36 1 1.0979 3.9463 -0.3748 37 1 1.7563 4.0753 -2.0225 38 1 4.7369 7.5102 -0.6840 39 1 6.9242 8.1030 0.2035 40 1 8.3407 6.4192 1.2990 41 1 7.5884 4.1095 1.5167 42 1 6.9905 1.5135 -0.3989 43 1 8.3410 0.7673 1.9667 44 1 7.0576 -0.4255 1.6534 45 1 10.0927 -2.4710 2.0590 46 1 3.9640 0.8155 -0.5391 47 1 3.7004 1.0359 1.2037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427633418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:35 Heat of formation + Delta-G solvation = 16.317863 kcal Electronic energy + Delta-G solvation = -29374.160432 eV Core-core repulsion = 25521.100256 eV Total energy + Delta-G solvation = -3853.060176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.26793 -38.89625 -38.74228 -36.70644 -34.34631 -33.79137 -32.92463 -32.34472 -31.32927 -29.82762 -29.27431 -27.51870 -25.64026 -24.54700 -23.97616 -22.49389 -22.20564 -21.99634 -20.63874 -19.70213 -18.08872 -17.58384 -17.23397 -16.17218 -15.69088 -15.53756 -15.38218 -15.19024 -15.15313 -14.68530 -14.39853 -14.28920 -14.16534 -13.90825 -13.72494 -13.51172 -13.02328 -12.88081 -12.60817 -12.25137 -12.08895 -12.07353 -12.00642 -11.78424 -11.71107 -11.50881 -11.19116 -11.07997 -11.07033 -10.97725 -10.78963 -10.48994 -10.25546 -9.87164 -9.48029 -9.16509 -8.84928 -8.69110 -8.47956 -8.14621 -8.08101 -6.25012 -4.32475 0.24795 0.77099 1.89352 2.81698 2.99424 3.18199 3.25816 3.28554 3.64549 3.74539 3.99015 4.02574 4.27190 4.48222 4.58686 4.69873 4.83957 4.88362 4.93085 5.02541 5.10116 5.11613 5.13696 5.19311 5.22159 5.30632 5.34940 5.40526 5.45349 5.55893 5.63893 5.71902 5.74916 5.82032 5.87386 5.91207 5.99873 6.04766 6.06585 6.31704 6.44708 6.47330 6.76031 6.83518 6.91097 7.14452 7.20472 7.37522 7.54475 7.85431 7.88032 8.40850 8.62009 8.85883 9.34252 10.85058 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007922 B = 0.004207 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3533.552146 B = 6654.292939 C = 9325.346811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 N -0.531 5.531 4 C 0.044 3.956 5 C -0.061 4.061 6 C 0.177 3.823 7 N -0.478 5.478 8 C 0.136 3.864 9 C -0.098 4.098 10 C -0.099 4.099 11 C -0.118 4.118 12 C -0.086 4.086 13 C -0.079 4.079 14 C -0.050 4.050 15 C 0.545 3.455 16 O -0.535 6.535 17 N -0.698 5.698 18 C 0.249 3.751 19 C -0.544 4.544 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.884 5.884 23 Si 0.903 3.097 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.281 1.281 27 C -0.097 4.097 28 C 0.092 3.908 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.042 0.958 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.393 0.607 43 H 0.030 0.970 44 H 0.030 0.970 45 H 0.266 0.734 46 H 0.059 0.941 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.002 11.945 -7.317 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 N -0.256 5.256 4 C -0.084 4.084 5 C -0.099 4.099 6 C 0.026 3.974 7 N -0.186 5.186 8 C 0.013 3.987 9 C -0.116 4.116 10 C -0.119 4.119 11 C -0.136 4.136 12 C -0.105 4.105 13 C -0.081 4.081 14 C -0.062 4.062 15 C 0.328 3.672 16 O -0.414 6.414 17 N -0.346 5.346 18 C 0.129 3.871 19 C -0.583 4.583 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.521 5.521 23 Si 0.730 3.270 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.100 4.100 28 C -0.036 4.036 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.061 0.939 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.226 0.774 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.615 12.573 -6.313 20.287 hybrid contribution 1.752 -1.485 -1.189 2.586 sum -12.863 11.089 -7.502 18.566 Atomic orbital electron populations 1.21804 0.94590 1.01660 1.02447 1.22112 0.96184 0.88175 1.01566 1.62357 1.12394 1.16370 1.34435 1.22291 1.01886 0.93497 0.90735 1.20504 0.91730 0.95854 1.01797 1.21145 0.95678 0.87449 0.93166 1.67562 1.13445 1.19130 1.18493 1.18680 0.89982 0.93944 0.96099 1.20741 0.96323 0.93938 1.00612 1.20898 0.93913 0.99776 0.97281 1.20944 1.00285 0.92933 0.99403 1.21060 0.94382 0.97242 0.97769 1.18606 0.96304 0.92615 1.00583 1.20579 0.94951 0.94116 0.96581 1.18026 0.80681 0.81496 0.87019 1.90814 1.67527 1.68871 1.14162 1.46563 1.39641 1.36461 1.11886 1.19217 0.89520 0.84574 0.93818 1.21215 1.23236 1.19150 0.94671 0.91806 1.24930 0.96825 0.96448 0.95616 1.69976 1.37523 1.28686 1.15915 0.86364 0.80147 0.79257 0.81202 1.19619 1.20701 1.20727 1.20476 0.93652 0.97051 0.98802 1.20975 0.87574 0.91833 1.03258 0.92144 0.91709 0.92654 0.94425 0.90190 0.89132 0.93927 0.88723 0.89077 0.84743 0.85272 0.85282 0.85003 0.77422 0.95164 0.95169 0.92393 0.92340 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.88 37.15 0.37 -0.85 16 2 C 0.05 0.49 5.66 -3.82 -0.02 0.47 16 3 N -0.53 -6.45 4.69 -236.30 -1.11 -7.55 16 4 C 0.04 0.44 5.43 -3.78 -0.02 0.42 16 5 C -0.06 -0.64 6.17 -27.83 -0.17 -0.82 16 6 C 0.18 2.53 6.69 -82.22 -0.55 1.98 16 7 N -0.48 -7.18 10.13 -7.14 -0.07 -7.26 16 8 C 0.14 2.08 6.62 -84.99 -0.56 1.51 16 9 C -0.10 -1.20 9.99 -39.43 -0.39 -1.60 16 10 C -0.10 -1.07 9.94 -39.95 -0.40 -1.47 16 11 C -0.12 -1.44 9.96 -39.88 -0.40 -1.84 16 12 C -0.09 -1.32 9.42 -39.61 -0.37 -1.69 16 13 C -0.08 -1.30 5.76 -106.60 -0.61 -1.91 16 14 C -0.05 -0.89 5.69 -104.29 -0.59 -1.48 16 15 C 0.54 11.15 4.62 -12.30 -0.06 11.10 16 16 O -0.54 -12.98 17.11 5.33 0.09 -12.89 16 17 N -0.70 -14.54 5.55 -62.41 -0.35 -14.88 16 18 C 0.25 6.35 5.43 -5.19 -0.03 6.32 16 19 C -0.54 -14.32 9.28 -34.44 -0.32 -14.64 16 20 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.88 -25.33 13.29 55.43 0.74 -24.59 16 23 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C -0.10 -1.53 5.84 -104.03 -0.61 -2.13 16 28 C 0.09 1.35 4.59 -5.19 -0.02 1.33 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.40 6.30 -51.93 -0.33 0.08 16 32 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 33 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.09 0.70 5.98 -51.93 -0.31 0.39 16 35 H 0.04 0.43 8.04 -51.93 -0.42 0.01 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.13 2.19 7.23 -52.48 -0.38 1.81 16 42 H 0.39 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 47 H 0.10 1.67 7.45 -51.93 -0.39 1.29 16 LS Contribution 384.59 15.07 5.80 5.80 Total: -1.00 -31.74 384.59 -11.55 -43.28 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.76 Total: 6.32 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -4.86 Total: -3.63 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.79 Total: -54.28 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.74 -11.55 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427633418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.603 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds