Wall clock time and date at job start Tue Mar 31 2020 23:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46905 * 109.47552 * 2 1 4 4 C 1.47136 * 110.99899 * 293.95791 * 3 2 1 5 5 C 1.52828 * 108.60798 * 164.99254 * 4 3 2 6 6 C 1.50987 * 109.97548 * 50.97078 * 5 4 3 7 7 N 1.31706 * 117.77884 * 162.83790 * 6 5 4 8 8 C 1.33232 * 122.50658 * 179.51568 * 7 6 5 9 9 C 1.40734 * 121.16496 * 180.34811 * 8 7 6 10 10 C 1.36050 * 119.75754 * 180.22818 * 9 8 7 11 11 C 1.39353 * 121.07299 * 359.48228 * 10 9 8 12 12 C 1.36252 * 120.82073 * 0.26952 * 11 10 9 13 13 C 1.40081 * 119.63219 * 359.97438 * 12 11 10 14 14 C 1.41592 * 121.57539 * 179.97438 * 13 12 11 15 15 C 1.47911 * 120.92470 * 0.02562 * 14 13 12 16 16 O 1.21546 * 120.00138 * 89.99641 * 15 14 13 17 17 N 1.34775 * 119.99984 * 269.99826 * 15 14 13 18 18 C 1.46498 * 120.00450 * 179.97438 * 17 15 14 19 19 C 1.50701 * 109.47478 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99765 * 359.97438 * 19 18 17 21 21 C 1.37873 * 119.99794 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00158 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99659 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47048 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47039 * 119.99752 * 23 21 19 26 26 H 1.48490 * 109.47009 * 239.99732 * 23 21 19 27 27 C 1.39022 * 121.09237 * 342.59379 * 6 5 4 28 28 C 1.46641 * 110.99751 * 171.01599 * 3 2 1 29 29 H 1.08994 * 109.47535 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47130 * 300.00079 * 1 2 3 31 31 H 1.08996 * 109.47241 * 59.99324 * 1 2 3 32 32 H 1.09002 * 109.47130 * 239.99920 * 2 1 3 33 33 H 1.08996 * 109.47241 * 120.00676 * 2 1 3 34 34 H 1.08997 * 109.61439 * 45.24959 * 4 3 2 35 35 H 1.09003 * 109.61245 * 284.72922 * 4 3 2 36 36 H 1.09003 * 109.38769 * 290.81714 * 5 4 3 37 37 H 1.09001 * 109.30389 * 171.07556 * 5 4 3 38 38 H 1.08004 * 120.11450 * 359.70368 * 9 8 7 39 39 H 1.08000 * 119.46629 * 179.75215 * 10 9 8 40 40 H 1.08001 * 119.59214 * 180.29003 * 11 10 9 41 41 H 1.08004 * 120.18614 * 179.97438 * 12 11 10 42 42 H 0.97008 * 119.99774 * 359.97438 * 17 15 14 43 43 H 1.08997 * 109.47069 * 300.00732 * 18 17 15 44 44 H 1.08997 * 109.46438 * 59.99901 * 18 17 15 45 45 H 0.96998 * 119.99575 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.30425 * 55.55458 * 28 3 2 47 47 H 1.08998 * 109.30996 * 296.15772 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6696 2.0681 -1.2553 5 6 1.8579 3.5722 -1.0609 6 6 3.2281 3.8512 -0.4915 7 7 3.6910 5.0811 -0.5804 8 6 4.8832 5.4337 -0.1015 9 6 5.3470 6.7584 -0.2055 10 6 6.5712 7.0860 0.2894 11 6 7.3749 6.1318 0.9104 12 6 6.9571 4.8408 1.0339 13 6 5.7041 4.4672 0.5312 14 6 5.2294 3.1374 0.6367 15 6 6.0450 2.0884 1.2864 16 8 5.9388 1.8885 2.4806 17 7 6.9060 1.3542 0.5542 18 6 7.7143 0.3156 1.1978 19 6 8.5865 -0.3532 0.1667 20 1 8.5427 -0.0365 -0.8649 21 6 9.4394 -1.3699 0.5402 22 7 9.4923 -1.7559 1.7963 23 14 10.5211 -2.1984 -0.7378 24 1 10.2760 -1.5837 -2.0672 25 1 11.9483 -2.0226 -0.3673 26 1 10.1993 -3.6469 -0.7947 27 6 3.9738 2.8445 0.1111 28 6 3.4698 1.4295 0.2138 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.6302 1.8589 -1.5081 35 1 2.3211 1.7182 -2.0562 36 1 1.0979 3.9463 -0.3748 37 1 1.7563 4.0753 -2.0225 38 1 4.7369 7.5102 -0.6840 39 1 6.9242 8.1030 0.2035 40 1 8.3407 6.4192 1.2990 41 1 7.5884 4.1095 1.5167 42 1 6.9905 1.5135 -0.3989 43 1 8.3410 0.7673 1.9667 44 1 7.0576 -0.4255 1.6534 45 1 10.0927 -2.4710 2.0590 46 1 3.9640 0.8155 -0.5391 47 1 3.7004 1.0359 1.2037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427633418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:34 Heat of formation + Delta-G solvation = -5.280771 kcal Electronic energy + Delta-G solvation = -29375.097019 eV Core-core repulsion = 25521.100256 eV Total energy + Delta-G solvation = -3853.996763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.46645 -40.42755 -39.88412 -37.71690 -36.32147 -35.10573 -34.31696 -33.82192 -32.35163 -30.78274 -30.36167 -29.44340 -26.82721 -25.63874 -25.41271 -24.01280 -23.30900 -23.12961 -21.75176 -21.22372 -19.40606 -18.94276 -18.37528 -17.89511 -17.35641 -16.86851 -16.44730 -16.32090 -16.29345 -16.06736 -15.99593 -15.54068 -15.32424 -14.98745 -14.82673 -14.70246 -14.45477 -14.25290 -14.11094 -13.76409 -13.54211 -13.11084 -13.01465 -12.88572 -12.83183 -12.78950 -12.60351 -12.43576 -12.30376 -12.15047 -11.96961 -11.66164 -11.61731 -11.48679 -11.38403 -10.89066 -10.57010 -10.07688 -9.72051 -9.50141 -9.25290 -8.34669 -6.51720 -0.92437 -0.33833 0.74015 1.31113 1.40126 1.40889 1.54239 1.75533 2.10658 2.37555 2.68327 2.91495 2.97766 3.00522 3.34879 3.46897 3.51942 3.64354 3.86424 3.97530 3.99892 4.12162 4.16143 4.23493 4.26999 4.28621 4.42079 4.47289 4.52964 4.60450 4.72516 4.74844 4.83879 4.91043 4.95657 4.98575 5.03602 5.07351 5.12973 5.14443 5.28803 5.31363 5.35640 5.38705 5.41405 5.51878 5.74801 5.78556 5.86458 6.01394 6.52033 6.61910 6.72510 7.04628 7.23411 8.77565 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007922 B = 0.004207 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3533.552146 B = 6654.292939 C = 9325.346811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.043 3.957 3 N -0.537 5.537 4 C 0.045 3.955 5 C -0.056 4.056 6 C 0.169 3.831 7 N -0.473 5.473 8 C 0.118 3.882 9 C -0.094 4.094 10 C -0.086 4.086 11 C -0.098 4.098 12 C -0.125 4.125 13 C -0.093 4.093 14 C -0.078 4.078 15 C 0.557 3.443 16 O -0.582 6.582 17 N -0.690 5.690 18 C 0.268 3.732 19 C -0.557 4.557 20 H 0.080 0.920 21 C 0.010 3.990 22 N -0.927 5.927 23 Si 0.983 3.017 24 H -0.256 1.256 25 H -0.277 1.277 26 H -0.277 1.277 27 C -0.097 4.097 28 C 0.099 3.901 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.061 0.939 34 H 0.121 0.879 35 H 0.043 0.957 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.163 0.837 39 H 0.176 0.824 40 H 0.156 0.844 41 H 0.104 0.896 42 H 0.405 0.595 43 H -0.005 1.005 44 H -0.005 1.005 45 H 0.270 0.730 46 H 0.054 0.946 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.002 14.298 -10.515 23.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.084 4.084 3 N -0.262 5.262 4 C -0.083 4.083 5 C -0.093 4.093 6 C 0.017 3.983 7 N -0.181 5.181 8 C -0.005 4.005 9 C -0.113 4.113 10 C -0.106 4.106 11 C -0.115 4.115 12 C -0.144 4.144 13 C -0.095 4.095 14 C -0.090 4.090 15 C 0.342 3.658 16 O -0.463 6.463 17 N -0.338 5.338 18 C 0.146 3.854 19 C -0.594 4.594 20 H 0.098 0.902 21 C -0.190 4.190 22 N -0.565 5.565 23 Si 0.806 3.194 24 H -0.180 1.180 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.100 4.100 28 C -0.030 4.030 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.062 0.938 36 H 0.122 0.878 37 H 0.133 0.867 38 H 0.181 0.819 39 H 0.193 0.807 40 H 0.174 0.826 41 H 0.122 0.878 42 H 0.240 0.760 43 H 0.012 0.988 44 H 0.013 0.987 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.636 14.953 -9.546 23.647 hybrid contribution 2.056 -2.100 -0.134 2.942 sum -13.579 12.853 -9.680 21.055 Atomic orbital electron populations 1.21757 0.92273 1.02684 1.02947 1.22198 0.97977 0.87283 1.00943 1.62386 1.10061 1.17537 1.36216 1.22432 1.03613 0.92806 0.89425 1.20640 0.89359 0.96447 1.02879 1.21704 0.96980 0.86749 0.92825 1.67671 1.13212 1.19130 1.18108 1.19119 0.90052 0.94997 0.96355 1.21145 0.97105 0.92934 1.00080 1.21372 0.92786 1.01313 0.95099 1.21350 1.01259 0.91609 0.97318 1.20983 0.94530 0.98575 1.00334 1.18755 0.97126 0.92284 1.01375 1.20309 0.95721 0.93875 0.99072 1.18432 0.79824 0.81224 0.86281 1.90763 1.68848 1.70283 1.16418 1.46261 1.39428 1.35753 1.12350 1.18682 0.88791 0.84535 0.93395 1.21543 1.23274 1.19375 0.95249 0.90189 1.25991 0.98219 0.96994 0.97822 1.70127 1.38559 1.29435 1.18400 0.85139 0.77705 0.77963 0.78619 1.17962 1.20244 1.20213 1.20670 0.92995 0.97913 0.98433 1.20761 0.89790 0.91268 1.01144 0.90927 0.92315 0.90916 0.93963 0.92037 0.86062 0.93847 0.87768 0.86672 0.81948 0.80660 0.82628 0.87827 0.75961 0.98754 0.98683 0.92074 0.92797 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.88 71.98 0.71 -1.35 16 2 C 0.04 0.91 5.66 86.30 0.49 1.40 16 3 N -0.54 -13.01 4.69 -901.50 -4.23 -17.24 16 4 C 0.04 0.79 5.43 86.20 0.47 1.26 16 5 C -0.06 -1.04 6.17 29.88 0.18 -0.86 16 6 C 0.17 4.70 6.69 42.86 0.29 4.98 16 7 N -0.47 -13.48 10.13 -176.50 -1.79 -15.27 16 8 C 0.12 3.46 6.62 40.40 0.27 3.72 16 9 C -0.09 -2.02 9.99 22.37 0.22 -1.80 16 10 C -0.09 -1.54 9.94 22.03 0.22 -1.32 16 11 C -0.10 -2.22 9.96 22.08 0.22 -2.00 16 12 C -0.13 -4.00 9.42 22.25 0.21 -3.79 16 13 C -0.09 -3.17 5.76 -21.15 -0.12 -3.29 16 14 C -0.08 -2.94 5.69 -19.65 -0.11 -3.05 16 15 C 0.56 25.03 4.62 86.81 0.40 25.43 16 16 O -0.58 -31.20 17.11 -3.86 -0.07 -31.27 16 17 N -0.69 -31.19 5.55 -469.65 -2.60 -33.79 16 18 C 0.27 14.80 5.43 85.63 0.46 15.26 16 19 C -0.56 -30.30 9.28 25.60 0.24 -30.07 16 20 H 0.08 4.01 7.60 -2.91 -0.02 3.98 16 21 C 0.01 0.55 5.46 84.65 0.46 1.01 16 22 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 23 Si 0.98 42.08 29.54 68.60 2.03 44.10 16 24 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 25 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 27 C -0.10 -3.19 5.84 -19.48 -0.11 -3.30 16 28 C 0.10 3.12 4.59 85.56 0.39 3.51 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 0.83 6.30 -2.39 -0.02 0.81 16 32 H 0.04 0.84 8.12 -2.39 -0.02 0.82 16 33 H 0.06 1.49 8.09 -2.39 -0.02 1.47 16 34 H 0.12 1.44 5.98 -2.39 -0.01 1.42 16 35 H 0.04 0.79 8.04 -2.39 -0.02 0.77 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 39 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 40 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 41 H 0.10 3.81 7.23 -2.91 -0.02 3.79 16 42 H 0.41 16.13 8.31 -92.70 -0.77 15.36 16 43 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 44 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.27 14.98 8.31 -92.71 -0.77 14.20 16 46 H 0.05 1.69 8.13 -2.39 -0.02 1.68 16 47 H 0.06 2.42 7.45 -2.39 -0.02 2.41 16 Total: -1.00 -74.73 384.59 -1.26 -75.99 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.23 Total: 26.69 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 4.89 Total: 5.75 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -8.33 Total: -121.27 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.07 Total: -31.27 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -74.73 -1.26 -75.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427633418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.713 kcal (2) G-P(sol) polarization free energy of solvation -74.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds