Wall clock time and date at job start Tue Mar 31 2020 22:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.50511 * 2 1 4 4 C 1.53137 * 109.54495 * 239.88399 * 2 1 3 5 5 C 1.53244 * 109.52624 * 170.24554 * 4 2 1 6 6 N 1.46575 * 108.78420 * 50.58050 * 5 4 2 7 7 C 1.34868 * 127.50627 * 163.06944 * 6 5 4 8 8 C 1.36567 * 106.79075 * 180.29667 * 7 6 5 9 9 C 1.47328 * 126.21241 * 179.81084 * 8 7 6 10 10 O 1.21627 * 119.99504 * 359.71237 * 9 8 7 11 11 N 1.34774 * 120.00079 * 179.71002 * 9 8 7 12 12 C 1.46505 * 119.99656 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.46577 * 180.02562 * 12 11 9 14 14 C 1.38636 * 119.74935 * 269.72549 * 13 12 11 15 15 C 1.37625 * 120.24812 * 179.72397 * 14 13 12 16 16 C 1.40707 * 119.74206 * 0.52999 * 15 14 13 17 17 C 1.41396 * 120.24281 * 179.72656 * 16 15 14 18 18 H 1.08003 * 120.00156 * 155.31141 * 17 16 15 19 19 C 1.39948 * 120.00146 * 335.30638 * 17 16 15 20 20 N 1.30827 * 119.99739 * 342.24299 * 19 17 16 21 21 Si 1.86802 * 120.00226 * 162.23191 * 19 17 16 22 22 H 1.48501 * 109.46907 * 94.67007 * 21 19 17 23 23 H 1.48496 * 109.47253 * 214.66956 * 21 19 17 24 24 H 1.48501 * 109.47063 * 334.66584 * 21 19 17 25 25 C 1.40720 * 119.51519 * 359.74474 * 16 15 14 26 26 C 1.37609 * 119.74241 * 0.02562 * 25 16 15 27 27 N 1.35887 * 107.57834 * 359.54576 * 8 7 6 28 28 C 1.29794 * 108.85146 * 0.24211 * 27 8 7 29 29 C 1.51099 * 127.17778 * 180.02562 * 28 27 8 30 30 H 1.08993 * 109.47650 * 299.91112 * 1 2 3 31 31 H 1.09004 * 109.47055 * 59.91518 * 1 2 3 32 32 H 1.09006 * 109.47390 * 179.90801 * 1 2 3 33 33 H 1.08991 * 109.46548 * 290.26906 * 4 2 1 34 34 H 1.08998 * 109.45796 * 50.24669 * 4 2 1 35 35 H 1.08994 * 109.58404 * 170.37486 * 5 4 2 36 36 H 1.09008 * 109.58237 * 290.65380 * 5 4 2 37 37 H 1.08003 * 126.60455 * 0.15672 * 7 6 5 38 38 H 0.96996 * 119.99831 * 0.02562 * 11 9 8 39 39 H 1.08996 * 109.46908 * 60.00674 * 12 11 9 40 40 H 1.08996 * 109.47396 * 299.99982 * 12 11 9 41 41 H 1.08006 * 119.87605 * 359.97438 * 14 13 12 42 42 H 1.07997 * 120.12484 * 180.27858 * 15 14 13 43 43 H 0.96995 * 119.99940 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.12818 * 179.97438 * 25 16 15 45 45 H 1.08002 * 119.87539 * 179.97438 * 26 25 16 46 46 H 1.08995 * 109.71795 * 283.73659 * 29 28 27 47 47 H 1.08995 * 109.71577 * 44.34081 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0423 -0.7241 -1.2483 5 6 3.5551 -0.5157 -1.3767 6 7 4.1879 -0.8503 -0.0976 7 6 5.4920 -1.1067 0.1311 8 6 5.6136 -1.3738 1.4648 9 6 6.8592 -1.7137 2.1744 10 8 7.9083 -1.7817 1.5628 11 7 6.8361 -1.9492 3.5012 12 6 8.0747 -2.2877 4.2067 13 6 7.7777 -2.5015 5.6686 14 6 7.8466 -1.4321 6.5481 15 6 7.5718 -1.6146 7.8843 16 6 7.2308 -2.8948 8.3583 17 6 6.9522 -3.0954 9.7300 18 1 6.3275 -3.9204 10.0391 19 6 7.4859 -2.2250 10.6871 20 7 8.4979 -1.4553 10.3791 21 14 6.7530 -2.1619 12.4042 22 1 7.5189 -3.0628 13.3026 23 1 6.8221 -0.7716 12.9212 24 1 5.3354 -2.6013 12.3538 25 6 7.1696 -3.9740 7.4574 26 6 7.4436 -3.7673 6.1248 27 7 4.3781 -1.2633 2.0198 28 6 3.5275 -0.9506 1.0907 29 6 2.0419 -0.7258 1.2509 30 1 -0.3634 0.5124 0.8907 31 1 -0.3633 0.5152 -0.8893 32 1 -0.3634 -1.0277 -0.0016 33 1 1.8283 -1.7894 -1.1637 34 1 1.5444 -0.3226 -2.1309 35 1 3.9481 -1.1642 -2.1596 36 1 3.7605 0.5252 -1.6271 37 1 6.2868 -1.1037 -0.6002 38 1 5.9994 -1.8952 3.9889 39 1 8.7900 -1.4727 4.0963 40 1 8.4955 -3.2003 3.7846 41 1 8.1130 -0.4513 6.1827 42 1 7.6218 -0.7792 8.5669 43 1 8.8676 -0.8517 11.0423 44 1 6.9093 -4.9609 7.8106 45 1 7.3977 -4.5942 5.4316 46 1 1.5339 -1.6846 1.3541 47 1 1.8557 -0.1141 2.1336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601660366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:02 Heat of formation + Delta-G solvation = 19.171129 kcal Electronic energy + Delta-G solvation = -27654.269466 eV Core-core repulsion = 23801.333018 eV Total energy + Delta-G solvation = -3852.936449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.54109 -39.03566 -37.66642 -37.33814 -34.59722 -34.14839 -33.26697 -30.81575 -30.19801 -29.72717 -29.26100 -27.33155 -26.54693 -24.49628 -23.77241 -22.35769 -21.55879 -20.98453 -20.00111 -19.68493 -19.41571 -17.68930 -17.30997 -16.48437 -16.15293 -15.53064 -15.34161 -15.11114 -14.93985 -14.56513 -14.24599 -14.04765 -13.97421 -13.75191 -13.62369 -13.47282 -13.07029 -12.80024 -12.65687 -12.47830 -12.14363 -11.94900 -11.79549 -11.55168 -11.52332 -11.34536 -11.29281 -11.12173 -11.03404 -10.54826 -10.49128 -10.28912 -9.85235 -9.77903 -9.58023 -9.40259 -9.14496 -8.64984 -8.34011 -7.47518 -7.35904 -6.79306 -4.38256 1.61171 2.39305 2.39396 2.67585 3.05906 3.07856 3.08387 3.14591 3.78879 3.80868 3.87447 3.91506 4.03037 4.10208 4.19849 4.59773 4.63248 4.65852 4.76793 4.83633 5.06685 5.10185 5.17796 5.21237 5.25442 5.32672 5.46810 5.59395 5.63628 5.69160 5.77019 5.94127 5.96621 6.02527 6.34792 6.36349 6.43741 6.47468 6.86209 6.95039 7.00925 7.05377 7.27511 7.35396 7.60196 7.71854 7.82980 8.03719 8.10774 8.18119 8.27962 8.61915 8.69366 8.86830 8.95324 10.15013 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.002109 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.613938 B =13273.580461 C =14627.699705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.079 0.921 4 C -0.131 4.131 5 C 0.102 3.898 6 N -0.456 5.456 7 C 0.029 3.971 8 C -0.056 4.056 9 C 0.594 3.406 10 O -0.560 6.560 11 N -0.701 5.701 12 C 0.184 3.816 13 C -0.241 4.241 14 C -0.080 4.080 15 C -0.169 4.169 16 C 0.117 3.883 17 C -0.459 4.459 18 H 0.078 0.922 19 C 0.075 3.925 20 N -0.789 5.789 21 Si 0.908 3.092 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.260 1.260 25 C -0.229 4.229 26 C -0.070 4.070 27 N -0.453 5.453 28 C 0.207 3.793 29 C -0.029 4.029 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.187 0.813 38 H 0.408 0.592 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.118 0.882 43 H 0.281 0.719 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.694 4.737 -21.519 26.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.097 0.903 4 C -0.168 4.168 5 C -0.020 4.020 6 N -0.139 5.139 7 C -0.109 4.109 8 C -0.185 4.185 9 C 0.380 3.620 10 O -0.440 6.440 11 N -0.351 5.351 12 C 0.062 3.938 13 C -0.243 4.243 14 C -0.099 4.099 15 C -0.188 4.188 16 C 0.114 3.886 17 C -0.488 4.488 18 H 0.097 0.903 19 C -0.143 4.143 20 N -0.414 5.414 21 Si 0.732 3.268 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.184 1.184 25 C -0.248 4.248 26 C -0.088 4.088 27 N -0.172 5.172 28 C -0.056 4.056 29 C -0.067 4.067 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.204 0.796 38 H 0.244 0.756 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.136 0.864 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.965 4.756 -21.101 25.747 hybrid contribution -0.251 0.212 0.171 0.370 sum -14.216 4.968 -20.930 25.784 Atomic orbital electron populations 1.21799 0.93582 1.02472 1.02445 1.21280 0.96848 0.99889 0.93661 0.90291 1.21988 0.92854 1.02480 0.99522 1.22061 0.94071 1.02419 0.83467 1.45314 1.07312 1.51759 1.09518 1.22398 0.85991 1.04215 0.98306 1.20785 0.92932 1.13009 0.91786 1.16976 0.85895 0.76890 0.82236 1.90752 1.31205 1.54480 1.67562 1.46315 1.12906 1.68517 1.07328 1.19975 0.84888 0.99420 0.89517 1.18989 1.17860 0.94867 0.92581 1.20564 0.99366 0.96077 0.93918 1.21296 1.06227 0.97702 0.93603 1.17662 0.87386 0.90743 0.92822 1.19632 1.27169 1.11055 0.90992 0.90340 1.25947 0.93215 0.93799 1.01336 1.69831 1.16780 1.18428 1.36317 0.86309 0.80749 0.78427 0.81323 1.19548 1.19999 1.18370 1.20960 1.12786 0.97619 0.93485 1.20407 0.98469 0.94872 0.95092 1.70428 0.99298 1.17224 1.30262 1.23505 0.96579 1.05109 0.80453 1.20317 0.84918 1.02326 0.99185 0.91855 0.92205 0.92154 0.90404 0.89108 0.88885 0.89459 0.79603 0.75592 0.92264 0.92352 0.89387 0.86437 0.90780 0.88924 0.89378 0.89016 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.17 37.16 0.34 -0.19 16 2 C -0.10 -0.48 2.74 -90.33 -0.25 -0.73 16 3 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 4 C -0.13 -0.52 5.24 -26.53 -0.14 -0.66 16 5 C 0.10 0.54 6.96 -3.87 -0.03 0.51 16 6 N -0.46 -4.55 3.11 -113.42 -0.35 -4.90 16 7 C 0.03 0.37 11.32 -16.82 -0.19 0.18 16 8 C -0.06 -0.89 6.98 -82.98 -0.58 -1.47 16 9 C 0.59 11.05 7.81 -12.56 -0.10 10.95 16 10 O -0.56 -11.57 16.88 5.25 0.09 -11.48 16 11 N -0.70 -13.17 5.54 -62.59 -0.35 -13.52 16 12 C 0.18 3.64 5.79 -5.19 -0.03 3.61 16 13 C -0.24 -5.34 5.27 -104.33 -0.55 -5.89 16 14 C -0.08 -1.89 9.67 -39.66 -0.38 -2.28 16 15 C -0.17 -4.40 8.70 -38.87 -0.34 -4.73 16 16 C 0.12 3.11 5.57 -106.83 -0.60 2.51 16 17 C -0.46 -12.15 9.05 -37.74 -0.34 -12.49 16 18 H 0.08 1.99 7.91 -52.48 -0.41 1.58 16 19 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 20 N -0.79 -20.36 10.97 55.55 0.61 -19.75 16 21 Si 0.91 18.55 29.60 -169.99 -5.03 13.52 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 23 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 25 C -0.23 -5.64 9.80 -38.87 -0.38 -6.02 16 26 C -0.07 -1.58 9.67 -39.66 -0.38 -1.96 16 27 N -0.45 -6.98 11.00 -7.01 -0.08 -7.06 16 28 C 0.21 2.42 7.64 -154.63 -1.18 1.24 16 29 C -0.03 -0.22 5.64 -27.47 -0.15 -0.38 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.08 0.35 8.11 -51.93 -0.42 -0.07 16 34 H 0.09 0.18 8.12 -51.93 -0.42 -0.24 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 37 H 0.19 1.93 8.06 -52.48 -0.42 1.51 16 38 H 0.41 7.65 8.18 -40.82 -0.33 7.31 16 39 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 40 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 41 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 42 H 0.12 3.15 6.18 -52.49 -0.32 2.83 16 43 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 44 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 45 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 46 H 0.09 0.65 8.12 -51.93 -0.42 0.22 16 47 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 390.83 15.07 5.89 5.89 Total: -1.00 -31.72 390.83 -11.55 -43.27 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -6.96 Total: 10.02 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -5.37 Total: -16.00 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -0.17 Total: -45.23 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.72 -11.55 -43.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601660366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.437 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds