Wall clock time and date at job start Tue Mar 31 2020 22:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.50511 * 2 1 4 4 C 1.53137 * 109.54495 * 239.88399 * 2 1 3 5 5 C 1.53244 * 109.52624 * 170.24554 * 4 2 1 6 6 N 1.46575 * 108.78420 * 50.58050 * 5 4 2 7 7 C 1.34868 * 127.50627 * 163.06944 * 6 5 4 8 8 C 1.36567 * 106.79075 * 180.29667 * 7 6 5 9 9 C 1.47328 * 126.21241 * 179.81084 * 8 7 6 10 10 O 1.21627 * 119.99504 * 359.71237 * 9 8 7 11 11 N 1.34774 * 120.00079 * 179.71002 * 9 8 7 12 12 C 1.46505 * 119.99656 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.46577 * 180.02562 * 12 11 9 14 14 C 1.38636 * 119.74935 * 269.72549 * 13 12 11 15 15 C 1.37625 * 120.24812 * 179.72397 * 14 13 12 16 16 C 1.40707 * 119.74206 * 0.52999 * 15 14 13 17 17 C 1.41396 * 120.24281 * 179.72656 * 16 15 14 18 18 H 1.08003 * 120.00156 * 155.31141 * 17 16 15 19 19 C 1.39948 * 120.00146 * 335.30638 * 17 16 15 20 20 N 1.30827 * 119.99739 * 342.24299 * 19 17 16 21 21 Si 1.86802 * 120.00226 * 162.23191 * 19 17 16 22 22 H 1.48501 * 109.46907 * 94.67007 * 21 19 17 23 23 H 1.48496 * 109.47253 * 214.66956 * 21 19 17 24 24 H 1.48501 * 109.47063 * 334.66584 * 21 19 17 25 25 C 1.40720 * 119.51519 * 359.74474 * 16 15 14 26 26 C 1.37609 * 119.74241 * 0.02562 * 25 16 15 27 27 N 1.35887 * 107.57834 * 359.54576 * 8 7 6 28 28 C 1.29794 * 108.85146 * 0.24211 * 27 8 7 29 29 C 1.51099 * 127.17778 * 180.02562 * 28 27 8 30 30 H 1.08993 * 109.47650 * 299.91112 * 1 2 3 31 31 H 1.09004 * 109.47055 * 59.91518 * 1 2 3 32 32 H 1.09006 * 109.47390 * 179.90801 * 1 2 3 33 33 H 1.08991 * 109.46548 * 290.26906 * 4 2 1 34 34 H 1.08998 * 109.45796 * 50.24669 * 4 2 1 35 35 H 1.08994 * 109.58404 * 170.37486 * 5 4 2 36 36 H 1.09008 * 109.58237 * 290.65380 * 5 4 2 37 37 H 1.08003 * 126.60455 * 0.15672 * 7 6 5 38 38 H 0.96996 * 119.99831 * 0.02562 * 11 9 8 39 39 H 1.08996 * 109.46908 * 60.00674 * 12 11 9 40 40 H 1.08996 * 109.47396 * 299.99982 * 12 11 9 41 41 H 1.08006 * 119.87605 * 359.97438 * 14 13 12 42 42 H 1.07997 * 120.12484 * 180.27858 * 15 14 13 43 43 H 0.96995 * 119.99940 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.12818 * 179.97438 * 25 16 15 45 45 H 1.08002 * 119.87539 * 179.97438 * 26 25 16 46 46 H 1.08995 * 109.71795 * 283.73659 * 29 28 27 47 47 H 1.08995 * 109.71577 * 44.34081 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0423 -0.7241 -1.2483 5 6 3.5551 -0.5157 -1.3767 6 7 4.1879 -0.8503 -0.0976 7 6 5.4920 -1.1067 0.1311 8 6 5.6136 -1.3738 1.4648 9 6 6.8592 -1.7137 2.1744 10 8 7.9083 -1.7817 1.5628 11 7 6.8361 -1.9492 3.5012 12 6 8.0747 -2.2877 4.2067 13 6 7.7777 -2.5015 5.6686 14 6 7.8466 -1.4321 6.5481 15 6 7.5718 -1.6146 7.8843 16 6 7.2308 -2.8948 8.3583 17 6 6.9522 -3.0954 9.7300 18 1 6.3275 -3.9204 10.0391 19 6 7.4859 -2.2250 10.6871 20 7 8.4979 -1.4553 10.3791 21 14 6.7530 -2.1619 12.4042 22 1 7.5189 -3.0628 13.3026 23 1 6.8221 -0.7716 12.9212 24 1 5.3354 -2.6013 12.3538 25 6 7.1696 -3.9740 7.4574 26 6 7.4436 -3.7673 6.1248 27 7 4.3781 -1.2633 2.0198 28 6 3.5275 -0.9506 1.0907 29 6 2.0419 -0.7258 1.2509 30 1 -0.3634 0.5124 0.8907 31 1 -0.3633 0.5152 -0.8893 32 1 -0.3634 -1.0277 -0.0016 33 1 1.8283 -1.7894 -1.1637 34 1 1.5444 -0.3226 -2.1309 35 1 3.9481 -1.1642 -2.1596 36 1 3.7605 0.5252 -1.6271 37 1 6.2868 -1.1037 -0.6002 38 1 5.9994 -1.8952 3.9889 39 1 8.7900 -1.4727 4.0963 40 1 8.4955 -3.2003 3.7846 41 1 8.1130 -0.4513 6.1827 42 1 7.6218 -0.7792 8.5669 43 1 8.8676 -0.8517 11.0423 44 1 6.9093 -4.9609 7.8106 45 1 7.3977 -4.5942 5.4316 46 1 1.5339 -1.6846 1.3541 47 1 1.8557 -0.1141 2.1336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601660366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:01 Heat of formation + Delta-G solvation = 1.887026 kcal Electronic energy + Delta-G solvation = -27655.018961 eV Core-core repulsion = 23801.333018 eV Total energy + Delta-G solvation = -3853.685944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.43563 -40.49528 -39.38649 -38.02856 -36.31181 -35.13732 -34.77107 -32.22289 -31.37496 -31.16634 -30.40569 -28.76403 -27.58440 -25.73350 -24.70446 -23.61449 -22.91080 -22.16586 -21.81203 -20.98764 -20.05395 -19.24751 -18.74404 -17.43600 -17.14823 -17.06056 -16.85836 -16.18451 -15.92731 -15.63865 -15.51369 -15.42615 -15.15038 -14.96505 -14.67264 -14.52047 -14.25554 -14.14092 -13.85006 -13.60741 -13.33402 -13.20050 -13.10110 -12.95261 -12.73548 -12.53982 -12.40680 -12.17538 -11.96520 -11.78000 -11.67957 -11.51607 -11.36859 -11.30683 -11.09756 -10.98858 -10.70190 -10.07801 -9.45877 -9.40772 -9.29773 -8.67085 -6.37220 0.55405 0.83349 1.12281 1.35788 1.38255 1.45996 1.54126 1.66971 2.19917 2.40533 2.51657 2.78451 3.13619 3.55520 3.60139 3.70954 3.73684 3.91000 4.05065 4.19372 4.29293 4.29800 4.37079 4.39034 4.45450 4.50539 4.63773 4.71253 4.75973 4.77684 4.87593 4.90573 4.99961 5.02312 5.07501 5.13903 5.14208 5.33284 5.34613 5.41355 5.44602 5.47505 5.48597 5.67468 5.89314 6.06551 6.07467 6.18852 6.34402 6.56101 6.66441 6.88755 6.90805 6.99633 7.24912 8.30036 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.002109 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.613938 B =13273.580461 C =14627.699705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 H 0.078 0.922 4 C -0.126 4.126 5 C 0.091 3.909 6 N -0.447 5.447 7 C 0.048 3.952 8 C -0.101 4.101 9 C 0.595 3.405 10 O -0.587 6.587 11 N -0.703 5.703 12 C 0.193 3.807 13 C -0.229 4.229 14 C -0.083 4.083 15 C -0.191 4.191 16 C 0.086 3.914 17 C -0.495 4.495 18 H 0.078 0.922 19 C 0.034 3.966 20 N -0.821 5.821 21 Si 0.984 3.016 22 H -0.262 1.262 23 H -0.266 1.266 24 H -0.258 1.258 25 C -0.243 4.243 26 C -0.069 4.069 27 N -0.495 5.495 28 C 0.209 3.791 29 C -0.030 4.030 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.207 0.793 38 H 0.408 0.592 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.289 0.711 44 H 0.100 0.900 45 H 0.114 0.886 46 H 0.098 0.902 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.542 5.171 -23.728 29.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 H 0.096 0.904 4 C -0.163 4.163 5 C -0.028 4.028 6 N -0.128 5.128 7 C -0.093 4.093 8 C -0.229 4.229 9 C 0.383 3.617 10 O -0.469 6.469 11 N -0.352 5.352 12 C 0.071 3.929 13 C -0.230 4.230 14 C -0.102 4.102 15 C -0.210 4.210 16 C 0.084 3.916 17 C -0.524 4.524 18 H 0.096 0.904 19 C -0.182 4.182 20 N -0.447 5.447 21 Si 0.804 3.196 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.181 1.181 25 C -0.262 4.262 26 C -0.088 4.088 27 N -0.214 5.214 28 C -0.056 4.056 29 C -0.069 4.069 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.224 0.776 38 H 0.244 0.756 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.119 0.881 45 H 0.132 0.868 46 H 0.116 0.884 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.838 5.193 -23.345 28.685 hybrid contribution 0.286 0.097 0.656 0.723 sum -15.552 5.290 -22.689 28.011 Atomic orbital electron populations 1.21773 0.92409 1.02794 1.02972 1.21254 0.97677 0.99452 0.92670 0.90371 1.22023 0.91906 1.02353 1.00061 1.22546 0.94738 1.04015 0.81548 1.45624 1.06355 1.50012 1.10786 1.22665 0.87462 1.01898 0.97298 1.20545 0.92390 1.16786 0.93192 1.17313 0.86684 0.75917 0.81816 1.90717 1.32451 1.55817 1.67916 1.46168 1.12274 1.69004 1.07714 1.19798 0.85448 0.99683 0.87992 1.19199 1.15873 0.94286 0.93658 1.20750 0.98832 0.97288 0.93322 1.21253 1.08092 0.97293 0.94404 1.18011 0.88353 0.91514 0.93738 1.19888 1.28493 1.12372 0.91683 0.90370 1.26824 0.93054 0.92874 1.05400 1.69880 1.17704 1.19020 1.38072 0.85174 0.79733 0.78853 0.75851 1.18635 1.19003 1.18146 1.21159 1.13203 0.97616 0.94223 1.20678 0.97394 0.95871 0.94812 1.70335 0.99704 1.19124 1.32273 1.24162 0.97676 1.03310 0.80483 1.20531 0.82583 1.03050 1.00768 0.92284 0.90773 0.91939 0.90714 0.86126 0.86808 0.87636 0.77610 0.75638 0.92363 0.91843 0.87974 0.88018 0.89992 0.88147 0.86800 0.88361 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.17 71.98 0.66 0.02 16 2 C -0.09 -0.65 2.74 -10.61 -0.03 -0.68 16 3 H 0.08 0.60 8.12 -2.39 -0.02 0.58 16 4 C -0.13 -0.53 5.24 30.72 0.16 -0.36 16 5 C 0.09 0.63 6.96 86.45 0.60 1.23 16 6 N -0.45 -7.96 3.11 -512.75 -1.60 -9.56 16 7 C 0.05 1.14 11.32 83.84 0.95 2.09 16 8 C -0.10 -3.24 6.98 40.52 0.28 -2.95 16 9 C 0.59 22.31 7.81 86.64 0.68 22.98 16 10 O -0.59 -24.31 16.88 -4.12 -0.07 -24.38 16 11 N -0.70 -26.64 5.54 -470.19 -2.61 -29.25 16 12 C 0.19 7.64 5.79 85.63 0.50 8.13 16 13 C -0.23 -10.17 5.27 -19.67 -0.10 -10.27 16 14 C -0.08 -4.00 9.67 22.22 0.21 -3.79 16 15 C -0.19 -10.31 8.70 22.73 0.20 -10.12 16 16 C 0.09 4.76 5.57 -21.29 -0.12 4.65 16 17 C -0.50 -27.05 9.05 23.46 0.21 -26.84 16 18 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 19 C 0.03 1.73 5.14 85.26 0.44 2.17 16 20 N -0.82 -43.53 10.97 21.83 0.24 -43.29 16 21 Si 0.98 38.41 29.60 68.60 2.03 40.44 16 22 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 23 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 24 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 25 C -0.24 -12.19 9.80 22.73 0.22 -11.96 16 26 C -0.07 -3.12 9.67 22.22 0.21 -2.91 16 27 N -0.49 -15.32 11.00 -176.08 -1.94 -17.26 16 28 C 0.21 4.66 7.64 138.05 1.05 5.72 16 29 C -0.03 -0.43 5.64 30.11 0.17 -0.26 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 33 H 0.07 0.41 8.11 -2.39 -0.02 0.39 16 34 H 0.12 -0.12 8.12 -2.39 -0.02 -0.14 16 35 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.21 3.86 8.06 -2.91 -0.02 3.84 16 38 H 0.41 15.59 8.18 -92.71 -0.76 14.84 16 39 H 0.06 2.32 8.08 -2.39 -0.02 2.30 16 40 H 0.06 2.45 8.08 -2.39 -0.02 2.43 16 41 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 42 H 0.10 5.73 6.18 -2.91 -0.02 5.71 16 43 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 44 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 45 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 46 H 0.10 1.26 8.12 -2.39 -0.02 1.24 16 47 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -71.54 390.83 2.59 -68.95 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: 0.23 Total: 37.49 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 6.30 Total: -23.16 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -5.90 Total: -99.35 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.07 Total: -24.38 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -71.54 2.59 -68.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601660366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.840 kcal (2) G-P(sol) polarization free energy of solvation -71.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds