Wall clock time and date at job start Tue Mar 31 2020 22:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.50624 * 2 1 4 4 C 1.53135 * 109.54530 * 120.11787 * 2 1 3 5 5 C 1.53242 * 109.52291 * 189.75529 * 4 2 1 6 6 N 1.46581 * 108.78752 * 309.41613 * 5 4 2 7 7 C 1.34867 * 127.50602 * 197.54539 * 6 5 4 8 8 C 1.36565 * 106.79044 * 180.02562 * 7 6 5 9 9 C 1.47322 * 126.21526 * 179.87545 * 8 7 6 10 10 O 1.21626 * 120.00029 * 359.71514 * 9 8 7 11 11 N 1.34773 * 120.00284 * 179.71392 * 9 8 7 12 12 C 1.46503 * 119.99907 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.46828 * 179.97438 * 12 11 9 14 14 C 1.38635 * 119.75117 * 269.72578 * 13 12 11 15 15 C 1.37618 * 120.24833 * 179.72290 * 14 13 12 16 16 C 1.40708 * 119.74485 * 0.52815 * 15 14 13 17 17 C 1.41400 * 120.24537 * 179.72244 * 16 15 14 18 18 H 1.08003 * 119.99657 * 24.41209 * 17 16 15 19 19 C 1.39947 * 120.00306 * 204.40856 * 17 16 15 20 20 N 1.30827 * 119.99677 * 17.86250 * 19 17 16 21 21 Si 1.86794 * 120.00209 * 197.85579 * 19 17 16 22 22 H 1.48502 * 109.46778 * 90.00404 * 21 19 17 23 23 H 1.48496 * 109.47137 * 210.00323 * 21 19 17 24 24 H 1.48499 * 109.47179 * 330.00746 * 21 19 17 25 25 C 1.40715 * 119.51449 * 359.74844 * 16 15 14 26 26 C 1.37621 * 119.74342 * 359.97438 * 25 16 15 27 27 N 1.35897 * 107.57744 * 359.61222 * 8 7 6 28 28 C 1.29791 * 108.84803 * 0.28544 * 27 8 7 29 29 C 1.51108 * 127.17644 * 179.90721 * 28 27 8 30 30 H 1.08998 * 109.47416 * 180.08614 * 1 2 3 31 31 H 1.09008 * 109.46805 * 300.08451 * 1 2 3 32 32 H 1.08998 * 109.47422 * 60.08512 * 1 2 3 33 33 H 1.09004 * 109.46120 * 309.76983 * 4 2 1 34 34 H 1.08997 * 109.46092 * 69.74979 * 4 2 1 35 35 H 1.08999 * 109.58769 * 69.20981 * 5 4 2 36 36 H 1.09004 * 109.58260 * 189.48737 * 5 4 2 37 37 H 1.07999 * 126.60161 * 359.85926 * 7 6 5 38 38 H 0.97004 * 119.99937 * 359.72566 * 11 9 8 39 39 H 1.08996 * 109.47405 * 299.99642 * 12 11 9 40 40 H 1.08998 * 109.47166 * 60.00467 * 12 11 9 41 41 H 1.08000 * 119.87346 * 359.97438 * 14 13 12 42 42 H 1.08002 * 120.12307 * 180.27636 * 15 14 13 43 43 H 0.96999 * 119.99835 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.13047 * 179.97438 * 25 16 15 45 45 H 1.07996 * 119.87993 * 180.02562 * 26 25 16 46 46 H 1.09001 * 109.71611 * 315.64346 * 29 28 27 47 47 H 1.08994 * 109.71407 * 76.29000 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0423 -0.7241 1.2483 5 6 3.5551 -0.5156 1.3766 6 7 4.1879 -0.8503 0.0975 7 6 5.4902 -1.1177 -0.1292 8 6 5.6139 -1.3727 -1.4651 9 6 6.8595 -1.7119 -2.1749 10 8 7.9085 -1.7807 -1.5632 11 7 6.8366 -1.9460 -3.5019 12 6 8.0753 -2.2839 -4.2076 13 6 7.7785 -2.4961 -5.6697 14 6 7.4495 -3.7624 -6.1282 15 6 7.1710 -3.9667 -7.4603 16 6 7.2320 -2.8866 -8.3600 17 6 6.9536 -3.0857 -9.7319 18 1 6.3332 -3.9134 -10.0424 19 6 7.4820 -2.2102 -10.6874 20 7 8.4913 -1.4372 -10.3790 21 14 6.7462 -2.1457 -12.4031 22 1 5.6605 -1.1331 -12.4383 23 1 7.8009 -1.7748 -13.3804 24 1 6.1921 -3.4779 -12.7546 25 6 7.5727 -1.6067 -7.8844 26 6 7.8416 -1.4245 -6.5471 27 7 4.3783 -1.2624 -2.0200 28 6 3.5276 -0.9504 -1.0908 29 6 2.0421 -0.7246 -1.2511 30 1 -0.3634 -1.0276 0.0015 31 1 -0.3633 0.5152 0.8893 32 1 -0.3634 0.5125 -0.8907 33 1 1.5443 -0.3229 2.1310 34 1 1.8286 -1.7896 1.1634 35 1 3.7607 0.5256 1.6246 36 1 3.9478 -1.1625 2.1612 37 1 6.2831 -1.1258 0.6041 38 1 5.9993 -1.8950 -3.9891 39 1 8.7907 -1.4691 -4.0963 40 1 8.4959 -3.1969 -3.7864 41 1 7.4077 -4.5909 -5.4366 42 1 6.9106 -4.9532 -7.8145 43 1 8.8578 -0.8306 -11.0414 44 1 7.6229 -0.7707 -8.5663 45 1 8.1029 -0.4432 -6.1797 46 1 1.8564 -0.1116 -2.1331 47 1 1.5336 -1.6830 -1.3550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601660367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:06 Heat of formation + Delta-G solvation = 19.095679 kcal Electronic energy + Delta-G solvation = -27654.985264 eV Core-core repulsion = 23802.045543 eV Total energy + Delta-G solvation = -3852.939721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.54161 -39.03609 -37.66715 -37.33903 -34.59795 -34.14881 -33.26766 -30.81578 -30.19801 -29.72726 -29.26024 -27.33223 -26.54767 -24.49681 -23.77302 -22.35854 -21.55923 -20.98504 -20.00038 -19.68475 -19.41564 -17.68974 -17.31017 -16.48596 -16.14741 -15.53449 -15.34633 -15.11262 -14.93854 -14.56491 -14.24714 -14.04674 -13.97455 -13.75229 -13.62231 -13.47280 -13.06984 -12.80138 -12.65608 -12.47873 -12.14409 -11.95042 -11.79567 -11.55231 -11.50853 -11.34474 -11.29286 -11.12809 -11.06919 -10.51832 -10.48980 -10.28856 -9.85251 -9.78013 -9.57953 -9.39364 -9.15447 -8.65011 -8.34026 -7.47708 -7.36227 -6.79296 -4.38446 1.61170 2.38937 2.39723 2.67434 3.05887 3.07905 3.09934 3.12912 3.78962 3.80786 3.87486 3.91391 4.03034 4.10167 4.19843 4.59867 4.63158 4.65569 4.76707 4.83759 5.06633 5.10161 5.17794 5.21235 5.25403 5.32608 5.46822 5.59335 5.63645 5.69074 5.76991 5.94131 5.96592 6.02552 6.34803 6.36335 6.43729 6.47498 6.86173 6.95095 7.00946 7.05427 7.27566 7.35549 7.60137 7.71829 7.82981 8.03773 8.10844 8.18095 8.27907 8.61977 8.69360 8.86800 8.95294 10.14925 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014874 B = 0.002110 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.036965 B =13266.947487 C =14623.053489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.079 0.921 4 C -0.131 4.131 5 C 0.102 3.898 6 N -0.456 5.456 7 C 0.030 3.970 8 C -0.056 4.056 9 C 0.594 3.406 10 O -0.560 6.560 11 N -0.701 5.701 12 C 0.184 3.816 13 C -0.241 4.241 14 C -0.070 4.070 15 C -0.229 4.229 16 C 0.116 3.884 17 C -0.459 4.459 18 H 0.079 0.921 19 C 0.075 3.925 20 N -0.789 5.789 21 Si 0.909 3.091 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.169 4.169 26 C -0.080 4.080 27 N -0.453 5.453 28 C 0.207 3.793 29 C -0.029 4.029 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.187 0.813 38 H 0.408 0.592 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.281 0.719 44 H 0.118 0.882 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.698 4.688 21.531 26.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.097 0.903 4 C -0.168 4.168 5 C -0.020 4.020 6 N -0.139 5.139 7 C -0.109 4.109 8 C -0.185 4.185 9 C 0.380 3.620 10 O -0.440 6.440 11 N -0.351 5.351 12 C 0.062 3.938 13 C -0.243 4.243 14 C -0.088 4.088 15 C -0.249 4.249 16 C 0.114 3.886 17 C -0.489 4.489 18 H 0.097 0.903 19 C -0.143 4.143 20 N -0.413 5.413 21 Si 0.734 3.266 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.188 4.188 26 C -0.099 4.099 27 N -0.172 5.172 28 C -0.056 4.056 29 C -0.067 4.067 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.204 0.796 38 H 0.244 0.756 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.092 0.908 44 H 0.136 0.864 45 H 0.106 0.894 46 H 0.116 0.884 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.964 4.710 21.109 25.744 hybrid contribution -0.270 0.212 -0.162 0.379 sum -14.233 4.922 20.947 25.799 Atomic orbital electron populations 1.21799 0.93580 1.02471 1.02445 1.21275 0.96849 0.99897 0.93662 0.90297 1.21989 0.92861 1.02477 0.99521 1.22062 0.94065 1.02414 0.83478 1.45315 1.07429 1.51639 1.09521 1.22397 0.86062 1.04173 0.98273 1.20785 0.92938 1.13089 0.91704 1.16974 0.85900 0.76890 0.82234 1.90752 1.31209 1.54470 1.67568 1.46317 1.12866 1.68556 1.07328 1.19975 0.84889 0.99425 0.89511 1.18990 1.17920 0.94802 0.92592 1.20408 0.98467 0.94871 0.95094 1.20955 1.12766 0.97621 0.93514 1.17666 0.87402 0.90750 0.92827 1.19647 1.27410 1.10782 0.91012 0.90315 1.25949 0.93195 0.93845 1.01338 1.69832 1.16869 1.18212 1.36419 0.86294 0.79610 0.79847 0.80883 1.19215 1.20300 1.18578 1.21308 1.06227 0.97729 0.93580 1.20564 0.99390 0.96062 0.93918 1.70431 0.99262 1.17227 1.30290 1.23505 0.96566 1.05068 0.80504 1.20314 0.84919 1.02328 0.99183 0.92153 0.92203 0.91855 0.89104 0.90407 0.89466 0.88865 0.79604 0.75592 0.92257 0.92361 0.89376 0.88926 0.90766 0.86391 0.89388 0.88371 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.17 37.16 0.34 -0.19 16 2 C -0.10 -0.48 2.74 -90.35 -0.25 -0.73 16 3 H 0.08 0.42 8.12 -51.93 -0.42 -0.01 16 4 C -0.13 -0.52 5.24 -26.54 -0.14 -0.66 16 5 C 0.10 0.54 6.96 -3.87 -0.03 0.51 16 6 N -0.46 -4.55 3.11 -113.42 -0.35 -4.90 16 7 C 0.03 0.37 11.32 -16.82 -0.19 0.18 16 8 C -0.06 -0.90 6.98 -82.98 -0.58 -1.47 16 9 C 0.59 11.05 7.81 -12.57 -0.10 10.95 16 10 O -0.56 -11.57 16.88 5.25 0.09 -11.48 16 11 N -0.70 -13.17 5.54 -62.60 -0.35 -13.52 16 12 C 0.18 3.64 5.79 -5.19 -0.03 3.61 16 13 C -0.24 -5.35 5.27 -104.33 -0.55 -5.90 16 14 C -0.07 -1.58 9.67 -39.66 -0.38 -1.96 16 15 C -0.23 -5.64 9.80 -38.88 -0.38 -6.02 16 16 C 0.12 3.10 5.58 -106.83 -0.60 2.50 16 17 C -0.46 -12.14 9.05 -37.74 -0.34 -12.49 16 18 H 0.08 2.00 7.91 -52.48 -0.42 1.59 16 19 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 20 N -0.79 -20.35 10.95 55.55 0.61 -19.74 16 21 Si 0.91 18.58 29.60 -169.99 -5.03 13.55 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 25 C -0.17 -4.40 8.70 -38.87 -0.34 -4.74 16 26 C -0.08 -1.90 9.67 -39.66 -0.38 -2.28 16 27 N -0.45 -6.98 11.00 -7.00 -0.08 -7.06 16 28 C 0.21 2.42 7.64 -154.63 -1.18 1.24 16 29 C -0.03 -0.22 5.64 -27.49 -0.15 -0.38 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.17 8.14 -51.92 -0.42 -0.25 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 0.18 8.12 -51.93 -0.42 -0.24 16 34 H 0.08 0.35 8.11 -51.93 -0.42 -0.07 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.19 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.41 7.65 8.18 -40.82 -0.33 7.31 16 39 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 40 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 41 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 43 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 44 H 0.12 3.17 6.16 -52.49 -0.32 2.84 16 45 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 46 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.09 0.65 8.11 -51.93 -0.42 0.22 16 LS Contribution 390.80 15.07 5.89 5.89 Total: -1.00 -31.69 390.80 -11.55 -43.24 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -6.96 Total: 10.03 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -5.37 Total: -16.02 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.17 Total: -45.22 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.69 -11.55 -43.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601660367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.340 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds