Wall clock time and date at job start Tue Mar 31 2020 22:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.50624 * 2 1 4 4 C 1.53135 * 109.54530 * 120.11787 * 2 1 3 5 5 C 1.53242 * 109.52291 * 189.75529 * 4 2 1 6 6 N 1.46581 * 108.78752 * 309.41613 * 5 4 2 7 7 C 1.34867 * 127.50602 * 197.54539 * 6 5 4 8 8 C 1.36565 * 106.79044 * 180.02562 * 7 6 5 9 9 C 1.47322 * 126.21526 * 179.87545 * 8 7 6 10 10 O 1.21626 * 120.00029 * 359.71514 * 9 8 7 11 11 N 1.34773 * 120.00284 * 179.71392 * 9 8 7 12 12 C 1.46503 * 119.99907 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.46828 * 179.97438 * 12 11 9 14 14 C 1.38635 * 119.75117 * 269.72578 * 13 12 11 15 15 C 1.37618 * 120.24833 * 179.72290 * 14 13 12 16 16 C 1.40708 * 119.74485 * 0.52815 * 15 14 13 17 17 C 1.41400 * 120.24537 * 179.72244 * 16 15 14 18 18 H 1.08003 * 119.99657 * 24.41209 * 17 16 15 19 19 C 1.39947 * 120.00306 * 204.40856 * 17 16 15 20 20 N 1.30827 * 119.99677 * 17.86250 * 19 17 16 21 21 Si 1.86794 * 120.00209 * 197.85579 * 19 17 16 22 22 H 1.48502 * 109.46778 * 90.00404 * 21 19 17 23 23 H 1.48496 * 109.47137 * 210.00323 * 21 19 17 24 24 H 1.48499 * 109.47179 * 330.00746 * 21 19 17 25 25 C 1.40715 * 119.51449 * 359.74844 * 16 15 14 26 26 C 1.37621 * 119.74342 * 359.97438 * 25 16 15 27 27 N 1.35897 * 107.57744 * 359.61222 * 8 7 6 28 28 C 1.29791 * 108.84803 * 0.28544 * 27 8 7 29 29 C 1.51108 * 127.17644 * 179.90721 * 28 27 8 30 30 H 1.08998 * 109.47416 * 180.08614 * 1 2 3 31 31 H 1.09008 * 109.46805 * 300.08451 * 1 2 3 32 32 H 1.08998 * 109.47422 * 60.08512 * 1 2 3 33 33 H 1.09004 * 109.46120 * 309.76983 * 4 2 1 34 34 H 1.08997 * 109.46092 * 69.74979 * 4 2 1 35 35 H 1.08999 * 109.58769 * 69.20981 * 5 4 2 36 36 H 1.09004 * 109.58260 * 189.48737 * 5 4 2 37 37 H 1.07999 * 126.60161 * 359.85926 * 7 6 5 38 38 H 0.97004 * 119.99937 * 359.72566 * 11 9 8 39 39 H 1.08996 * 109.47405 * 299.99642 * 12 11 9 40 40 H 1.08998 * 109.47166 * 60.00467 * 12 11 9 41 41 H 1.08000 * 119.87346 * 359.97438 * 14 13 12 42 42 H 1.08002 * 120.12307 * 180.27636 * 15 14 13 43 43 H 0.96999 * 119.99835 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.13047 * 179.97438 * 25 16 15 45 45 H 1.07996 * 119.87993 * 180.02562 * 26 25 16 46 46 H 1.09001 * 109.71611 * 315.64346 * 29 28 27 47 47 H 1.08994 * 109.71407 * 76.29000 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0423 -0.7241 1.2483 5 6 3.5551 -0.5156 1.3766 6 7 4.1879 -0.8503 0.0975 7 6 5.4902 -1.1177 -0.1292 8 6 5.6139 -1.3727 -1.4651 9 6 6.8595 -1.7119 -2.1749 10 8 7.9085 -1.7807 -1.5632 11 7 6.8366 -1.9460 -3.5019 12 6 8.0753 -2.2839 -4.2076 13 6 7.7785 -2.4961 -5.6697 14 6 7.4495 -3.7624 -6.1282 15 6 7.1710 -3.9667 -7.4603 16 6 7.2320 -2.8866 -8.3600 17 6 6.9536 -3.0857 -9.7319 18 1 6.3332 -3.9134 -10.0424 19 6 7.4820 -2.2102 -10.6874 20 7 8.4913 -1.4372 -10.3790 21 14 6.7462 -2.1457 -12.4031 22 1 5.6605 -1.1331 -12.4383 23 1 7.8009 -1.7748 -13.3804 24 1 6.1921 -3.4779 -12.7546 25 6 7.5727 -1.6067 -7.8844 26 6 7.8416 -1.4245 -6.5471 27 7 4.3783 -1.2624 -2.0200 28 6 3.5276 -0.9504 -1.0908 29 6 2.0421 -0.7246 -1.2511 30 1 -0.3634 -1.0276 0.0015 31 1 -0.3633 0.5152 0.8893 32 1 -0.3634 0.5125 -0.8907 33 1 1.5443 -0.3229 2.1310 34 1 1.8286 -1.7896 1.1634 35 1 3.7607 0.5256 1.6246 36 1 3.9478 -1.1625 2.1612 37 1 6.2831 -1.1258 0.6041 38 1 5.9993 -1.8950 -3.9891 39 1 8.7907 -1.4691 -4.0963 40 1 8.4959 -3.1969 -3.7864 41 1 7.4077 -4.5909 -5.4366 42 1 6.9106 -4.9532 -7.8145 43 1 8.8578 -0.8306 -11.0414 44 1 7.6229 -0.7707 -8.5663 45 1 8.1029 -0.4432 -6.1797 46 1 1.8564 -0.1116 -2.1331 47 1 1.5336 -1.6830 -1.3550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601660367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:05 Heat of formation + Delta-G solvation = 1.832780 kcal Electronic energy + Delta-G solvation = -27655.733840 eV Core-core repulsion = 23802.045543 eV Total energy + Delta-G solvation = -3853.688296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.43615 -40.49574 -39.38706 -38.02984 -36.31304 -35.13798 -34.77147 -32.22306 -31.37520 -31.16564 -30.40575 -28.76478 -27.58523 -25.73464 -24.70449 -23.61498 -22.91159 -22.16668 -21.81147 -20.98748 -20.05401 -19.24795 -18.74460 -17.43821 -17.15168 -17.05599 -16.86218 -16.18278 -15.92515 -15.63948 -15.51583 -15.42562 -15.15024 -14.96571 -14.67331 -14.52026 -14.25608 -14.14053 -13.85103 -13.60613 -13.32915 -13.20184 -13.10149 -12.95508 -12.76347 -12.54033 -12.39540 -12.15747 -11.96570 -11.78058 -11.67911 -11.51314 -11.36896 -11.29886 -11.09966 -10.99664 -10.70303 -10.07813 -9.45954 -9.40952 -9.30134 -8.67095 -6.37410 0.55393 0.83145 1.12281 1.35777 1.38261 1.48115 1.52019 1.66990 2.19914 2.40466 2.51623 2.78259 3.13551 3.55508 3.60178 3.70859 3.73606 3.91007 4.05039 4.19365 4.29315 4.29820 4.37048 4.38961 4.45476 4.50536 4.63769 4.71222 4.75971 4.77674 4.87581 4.90485 4.99904 5.02354 5.07508 5.13863 5.14165 5.33377 5.34570 5.41434 5.44577 5.47492 5.48604 5.67367 5.89320 6.06508 6.07451 6.18909 6.34310 6.56072 6.66447 6.88714 6.90743 6.99593 7.24895 8.29868 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014874 B = 0.002110 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.036965 B =13266.947487 C =14623.053489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.078 0.922 4 C -0.126 4.126 5 C 0.091 3.909 6 N -0.447 5.447 7 C 0.048 3.952 8 C -0.101 4.101 9 C 0.595 3.405 10 O -0.587 6.587 11 N -0.703 5.703 12 C 0.193 3.807 13 C -0.229 4.229 14 C -0.069 4.069 15 C -0.243 4.243 16 C 0.086 3.914 17 C -0.495 4.495 18 H 0.078 0.922 19 C 0.034 3.966 20 N -0.821 5.821 21 Si 0.985 3.015 22 H -0.262 1.262 23 H -0.268 1.268 24 H -0.257 1.257 25 C -0.191 4.191 26 C -0.083 4.083 27 N -0.495 5.495 28 C 0.209 3.791 29 C -0.030 4.030 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.207 0.793 38 H 0.408 0.592 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.289 0.711 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.093 0.907 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.557 5.105 23.744 29.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 H 0.096 0.904 4 C -0.163 4.163 5 C -0.028 4.028 6 N -0.128 5.128 7 C -0.093 4.093 8 C -0.229 4.229 9 C 0.383 3.617 10 O -0.469 6.469 11 N -0.352 5.352 12 C 0.071 3.929 13 C -0.230 4.230 14 C -0.088 4.088 15 C -0.262 4.262 16 C 0.084 3.916 17 C -0.524 4.524 18 H 0.096 0.904 19 C -0.182 4.182 20 N -0.446 5.446 21 Si 0.805 3.195 22 H -0.186 1.186 23 H -0.192 1.192 24 H -0.181 1.181 25 C -0.211 4.211 26 C -0.102 4.102 27 N -0.214 5.214 28 C -0.056 4.056 29 C -0.069 4.069 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.093 0.907 35 H 0.123 0.877 36 H 0.132 0.868 37 H 0.224 0.776 38 H 0.244 0.756 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.132 0.868 42 H 0.118 0.882 43 H 0.100 0.900 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.112 0.888 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.849 5.131 23.357 28.689 hybrid contribution 0.271 0.104 -0.648 0.710 sum -15.578 5.235 22.708 28.031 Atomic orbital electron populations 1.21774 0.92405 1.02795 1.02971 1.21249 0.97680 0.99458 0.92677 0.90386 1.22025 0.91912 1.02353 1.00056 1.22547 0.94735 1.03997 0.81569 1.45625 1.06474 1.49886 1.10793 1.22664 0.87521 1.01861 0.97267 1.20545 0.92397 1.16870 0.93108 1.17311 0.86690 0.75915 0.81814 1.90716 1.32456 1.55808 1.67922 1.46170 1.12234 1.69043 1.07716 1.19797 0.85447 0.99687 0.87988 1.19200 1.15937 0.94224 0.93668 1.20680 0.97386 0.95874 0.94811 1.21152 1.13187 0.97611 0.94252 1.18015 0.88365 0.91520 0.93743 1.19895 1.28737 1.12074 0.91693 0.90378 1.26826 0.93038 0.92919 1.05397 1.69882 1.17791 1.18798 1.38165 0.85163 0.78836 0.79974 0.75507 1.18640 1.19203 1.18075 1.21266 1.08105 0.97323 0.94386 1.20748 0.98851 0.97273 0.93320 1.70339 0.99666 1.19128 1.32302 1.24162 0.97663 1.03270 0.80533 1.20527 0.82585 1.03052 1.00764 0.91934 0.90772 0.92287 0.86124 0.90708 0.87668 0.86765 0.77609 0.75638 0.92365 0.91847 0.86792 0.88156 0.89989 0.87970 0.87984 0.88845 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.17 71.98 0.66 0.02 16 2 C -0.09 -0.66 2.74 -10.62 -0.03 -0.68 16 3 H 0.08 0.60 8.12 -2.39 -0.02 0.59 16 4 C -0.13 -0.52 5.24 30.72 0.16 -0.36 16 5 C 0.09 0.63 6.96 86.44 0.60 1.23 16 6 N -0.45 -7.96 3.11 -512.74 -1.60 -9.56 16 7 C 0.05 1.14 11.32 83.84 0.95 2.09 16 8 C -0.10 -3.24 6.98 40.51 0.28 -2.96 16 9 C 0.59 22.31 7.81 86.63 0.68 22.99 16 10 O -0.59 -24.32 16.88 -4.11 -0.07 -24.39 16 11 N -0.70 -26.65 5.54 -470.20 -2.61 -29.25 16 12 C 0.19 7.64 5.79 85.63 0.50 8.13 16 13 C -0.23 -10.17 5.27 -19.67 -0.10 -10.28 16 14 C -0.07 -3.12 9.67 22.22 0.21 -2.90 16 15 C -0.24 -12.18 9.80 22.73 0.22 -11.96 16 16 C 0.09 4.75 5.58 -21.29 -0.12 4.63 16 17 C -0.49 -27.02 9.05 23.46 0.21 -26.81 16 18 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 19 C 0.03 1.72 5.14 85.26 0.44 2.15 16 20 N -0.82 -43.50 10.95 21.83 0.24 -43.26 16 21 Si 0.98 38.46 29.60 68.60 2.03 40.49 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 23 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 24 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 25 C -0.19 -10.34 8.70 22.73 0.20 -10.14 16 26 C -0.08 -4.00 9.67 22.22 0.21 -3.79 16 27 N -0.49 -15.32 11.00 -176.07 -1.94 -17.26 16 28 C 0.21 4.66 7.64 138.05 1.06 5.72 16 29 C -0.03 -0.43 5.64 30.10 0.17 -0.26 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.07 0.16 8.14 -2.38 -0.02 0.14 16 32 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.12 -0.12 8.12 -2.39 -0.02 -0.14 16 34 H 0.07 0.41 8.11 -2.39 -0.02 0.39 16 35 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.21 3.86 8.06 -2.91 -0.02 3.84 16 38 H 0.41 15.60 8.18 -92.71 -0.76 14.84 16 39 H 0.06 2.32 8.08 -2.39 -0.02 2.30 16 40 H 0.06 2.45 8.08 -2.39 -0.02 2.43 16 41 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 43 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 44 H 0.10 5.76 6.16 -2.91 -0.02 5.74 16 45 H 0.10 4.53 8.06 -2.91 -0.02 4.50 16 46 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.10 1.26 8.11 -2.39 -0.02 1.24 16 Total: -1.00 -71.50 390.80 2.59 -68.91 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: 0.23 Total: 37.50 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 6.30 Total: -23.18 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -5.90 Total: -99.33 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.07 Total: -24.39 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -71.50 2.59 -68.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601660367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.742 kcal (2) G-P(sol) polarization free energy of solvation -71.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds