Wall clock time and date at job start Tue Mar 31 2020 23:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47174 * 2 1 4 4 C 1.50698 * 109.47147 * 119.99908 * 2 1 3 5 5 N 1.31077 * 126.65964 * 300.17169 * 4 2 1 6 6 N 1.28846 * 107.98943 * 180.24449 * 5 4 2 7 7 N 1.28741 * 109.39538 * 359.75289 * 6 5 4 8 8 N 1.29021 * 108.81230 * 359.97438 * 7 6 5 9 9 C 1.46494 * 126.43852 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47013 * 90.03087 * 9 8 7 11 11 O 1.20817 * 119.99988 * 359.72312 * 10 9 8 12 12 O 1.34231 * 119.99861 * 180.02562 * 10 9 8 13 13 C 1.45199 * 116.99805 * 180.02562 * 12 10 9 14 14 H 1.09005 * 109.47051 * 30.00049 * 13 12 10 15 15 C 1.52999 * 109.46870 * 269.99793 * 13 12 10 16 16 C 1.50707 * 109.46987 * 149.99737 * 13 12 10 17 17 O 1.21283 * 119.99822 * 16.02973 * 16 13 12 18 18 N 1.34777 * 119.99859 * 196.02327 * 16 13 12 19 19 C 1.46502 * 119.99923 * 5.36888 * 18 16 13 20 20 C 1.46503 * 119.99934 * 185.36454 * 18 16 13 21 21 C 1.50699 * 109.46597 * 90.00167 * 20 18 16 22 22 H 1.07993 * 120.00366 * 0.02562 * 21 20 18 23 23 C 1.37881 * 119.99560 * 180.02562 * 21 20 18 24 24 N 1.31518 * 120.00107 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00108 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47019 * 89.99676 * 25 23 21 27 27 H 1.48493 * 109.47438 * 209.99882 * 25 23 21 28 28 H 1.48507 * 109.47319 * 330.00266 * 25 23 21 29 29 H 1.09007 * 109.47077 * 300.00065 * 1 2 3 30 30 H 1.08991 * 109.47272 * 59.99911 * 1 2 3 31 31 H 1.09002 * 109.47091 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46812 * 239.99733 * 2 1 3 33 33 H 1.09000 * 109.47469 * 60.00135 * 3 2 1 34 34 H 1.08996 * 109.47439 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47014 * 300.00363 * 3 2 1 36 36 H 1.08997 * 109.47312 * 330.02563 * 9 8 7 37 37 H 1.09005 * 109.47137 * 210.02620 * 9 8 7 38 38 H 1.08995 * 109.47393 * 66.14220 * 15 13 12 39 39 H 1.09003 * 109.46704 * 186.13654 * 15 13 12 40 40 H 1.08997 * 109.46947 * 306.13547 * 15 13 12 41 41 H 1.08995 * 109.47161 * 84.82204 * 19 18 16 42 42 H 1.08997 * 109.46819 * 204.82246 * 19 18 16 43 43 H 1.08999 * 109.46973 * 324.82171 * 19 18 16 44 44 H 1.08993 * 109.47033 * 210.00455 * 20 18 16 45 45 H 1.08995 * 109.46760 * 330.00583 * 20 18 16 46 46 H 0.96996 * 119.99888 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7950 -0.3801 2.4765 6 7 2.4016 -1.2267 3.2351 7 7 3.0155 -2.0915 2.5052 8 7 2.8089 -1.8093 1.2633 9 6 3.3279 -2.5429 0.1063 10 6 2.3493 -3.6196 -0.2861 11 8 1.3259 -3.7631 0.3398 12 8 2.6175 -4.4232 -1.3274 13 6 1.6295 -5.4376 -1.6486 14 1 0.6381 -5.0804 -1.3700 15 6 1.9455 -6.7199 -0.8761 16 6 1.6637 -5.7212 -3.1284 17 8 2.6123 -5.3615 -3.7930 18 7 0.6402 -6.3747 -3.7131 19 6 -0.5570 -6.7055 -2.9362 20 6 0.7249 -6.7543 -5.1256 21 6 1.3364 -8.1267 -5.2410 22 1 1.6320 -8.6628 -4.3514 23 6 1.5186 -8.6980 -6.4826 24 7 1.1590 -8.0449 -7.5661 25 14 2.2759 -10.3995 -6.6259 26 1 1.2019 -11.4243 -6.5867 27 1 3.0150 -10.5059 -7.9094 28 1 3.2129 -10.6211 -5.4952 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 4.2845 -2.9975 0.3636 37 1 3.4653 -1.8551 -0.7282 38 1 1.8144 -6.5427 0.1913 39 1 1.2713 -7.5135 -1.1982 40 1 2.9759 -7.0170 -1.0713 41 1 -1.2359 -5.8528 -2.9343 42 1 -1.0548 -7.5653 -3.3843 43 1 -0.2709 -6.9443 -1.9119 44 1 -0.2749 -6.7642 -5.5596 45 1 1.3453 -6.0340 -5.6587 46 1 1.2875 -8.4467 -8.4396 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747031575.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:48 Heat of formation + Delta-G solvation = -21.736256 kcal Electronic energy + Delta-G solvation = -30010.746130 eV Core-core repulsion = 25745.186540 eV Total energy + Delta-G solvation = -4265.559589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.40410 -42.16220 -40.64584 -38.13164 -37.20812 -36.71147 -36.56281 -34.87149 -33.27609 -32.60252 -30.55113 -29.68923 -28.13788 -27.60859 -26.19722 -25.56960 -25.19838 -24.09172 -22.53485 -21.61278 -20.50255 -19.68813 -18.97982 -18.69346 -18.19285 -17.90345 -17.71095 -17.29213 -16.75089 -16.56043 -16.31631 -15.95586 -15.69488 -15.12101 -14.77680 -14.57574 -14.35654 -14.23613 -14.12773 -13.92308 -13.68622 -13.59428 -13.40456 -13.29790 -13.13276 -13.11397 -12.89602 -12.76427 -12.72871 -12.68612 -12.52058 -12.34591 -12.32503 -12.21495 -12.10416 -11.95058 -11.82036 -11.72003 -11.15174 -10.67405 -10.64082 -9.53963 -8.23413 -6.37876 -0.11721 0.53839 0.69139 1.05795 1.25706 1.38525 1.40841 1.49899 1.56765 2.23801 2.40549 2.77849 3.03963 3.07261 3.15482 3.33170 3.49839 3.68034 3.74871 3.82227 3.97534 4.00463 4.11293 4.24738 4.30694 4.44498 4.52158 4.52668 4.61135 4.76310 4.79702 4.82603 4.85884 4.88687 4.91189 5.04068 5.06285 5.07639 5.21162 5.25917 5.33604 5.50027 5.76921 6.02763 6.20742 6.56467 6.71159 7.17016 7.35114 7.39617 8.84015 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.002380 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.839802 B =11762.697724 C =12209.305153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.017 4.017 3 C -0.140 4.140 4 C 0.215 3.785 5 N -0.323 5.323 6 N -0.098 5.098 7 N -0.098 5.098 8 N -0.301 5.301 9 C 0.121 3.879 10 C 0.454 3.546 11 O -0.517 6.517 12 O -0.325 6.325 13 C 0.085 3.915 14 H 0.122 0.878 15 C -0.162 4.162 16 C 0.504 3.496 17 O -0.572 6.572 18 N -0.599 5.599 19 C 0.066 3.934 20 C 0.259 3.741 21 C -0.544 4.544 22 H 0.058 0.942 23 C 0.010 3.990 24 N -0.927 5.927 25 Si 0.966 3.034 26 H -0.265 1.265 27 H -0.283 1.283 28 H -0.271 1.271 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.042 0.958 32 H 0.118 0.882 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.190 0.810 37 H 0.200 0.800 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.030 0.970 45 H 0.005 0.995 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.477 14.408 14.496 20.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.039 4.039 3 C -0.198 4.198 4 C -0.063 4.063 5 N -0.171 5.171 6 N -0.092 5.092 7 N -0.084 5.084 8 N -0.103 5.103 9 C -0.001 4.001 10 C 0.295 3.705 11 O -0.405 6.405 12 O -0.240 6.240 13 C 0.027 3.973 14 H 0.140 0.860 15 C -0.219 4.219 16 C 0.290 3.710 17 O -0.451 6.451 18 N -0.331 5.331 19 C -0.076 4.076 20 C 0.138 3.862 21 C -0.583 4.583 22 H 0.076 0.924 23 C -0.189 4.189 24 N -0.567 5.567 25 Si 0.790 3.210 26 H -0.190 1.190 27 H -0.208 1.208 28 H -0.195 1.195 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.136 0.864 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.207 0.793 37 H 0.217 0.783 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.048 0.952 45 H 0.023 0.977 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.735 14.317 15.555 21.154 hybrid contribution 0.124 -1.238 -1.228 1.749 sum 0.858 13.079 14.327 19.418 Atomic orbital electron populations 1.21841 0.91825 1.02154 1.04334 1.20179 0.97750 0.97261 0.88692 1.21851 1.01725 0.91938 1.04283 1.26815 0.92903 0.88233 0.98364 1.74922 1.20416 1.22252 0.99500 1.78599 1.07477 0.99713 1.23398 1.78841 1.20425 1.20900 0.88191 1.48130 1.35065 1.20340 1.06726 1.21975 0.97096 0.93971 0.87050 1.23894 0.86614 0.81975 0.77998 1.90763 1.27771 1.69898 1.52080 1.86590 1.47740 1.42960 1.46691 1.22588 0.93638 0.89276 0.91838 0.86017 1.22188 1.04336 0.94624 1.00793 1.20477 0.82696 0.78695 0.89092 1.90671 1.35050 1.53383 1.66007 1.48054 1.17148 1.55197 1.12743 1.22147 0.86559 1.02373 0.96495 1.18874 0.96517 0.94366 0.76428 1.21695 1.41632 1.02074 0.92883 0.92402 1.25822 0.95774 1.02130 0.95212 1.70041 1.48402 1.39695 0.98521 0.85439 0.78718 0.79274 0.77539 1.19034 1.20830 1.19545 0.91940 0.88306 0.93889 0.86426 0.92173 0.91589 0.88428 0.79300 0.78324 0.89199 0.88612 0.91135 0.90799 0.90218 0.89292 0.95240 0.97731 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.18 71.98 0.66 -1.16 16 2 C -0.02 -0.20 3.26 -11.54 -0.04 -0.23 16 3 C -0.14 -1.14 9.17 71.98 0.66 -0.48 16 4 C 0.21 4.07 6.64 138.13 0.92 4.98 16 5 N -0.32 -8.23 12.36 -50.45 -0.62 -8.85 16 6 N -0.10 -2.81 13.43 37.01 0.50 -2.31 16 7 N -0.10 -2.46 13.29 37.02 0.49 -1.97 16 8 N -0.30 -5.62 2.83 -341.98 -0.97 -6.59 16 9 C 0.12 1.36 6.68 85.63 0.57 1.93 16 10 C 0.45 9.05 8.00 71.24 0.57 9.62 16 11 O -0.52 -13.33 15.65 21.99 0.34 -12.99 16 12 O -0.33 -8.13 9.47 -45.23 -0.43 -8.56 16 13 C 0.08 2.34 2.13 29.85 0.06 2.40 16 14 H 0.12 2.95 6.32 -2.38 -0.02 2.94 16 15 C -0.16 -3.82 9.19 71.98 0.66 -3.16 16 16 C 0.50 19.52 6.95 87.66 0.61 20.13 16 17 O -0.57 -27.66 16.13 15.22 0.25 -27.42 16 18 N -0.60 -23.54 2.86 -851.14 -2.43 -25.97 16 19 C 0.07 1.80 9.79 127.77 1.25 3.05 16 20 C 0.26 13.14 5.18 85.63 0.44 13.58 16 21 C -0.54 -29.60 9.39 25.60 0.24 -29.36 16 22 H 0.06 3.08 7.81 -2.91 -0.02 3.05 16 23 C 0.01 0.55 5.46 84.66 0.46 1.01 16 24 N -0.93 -53.89 13.29 21.45 0.28 -53.60 16 25 Si 0.97 42.90 29.54 68.60 2.03 44.92 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 28 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 29 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.12 0.77 6.84 -2.39 -0.02 0.75 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.19 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.20 0.50 7.12 -2.38 -0.02 0.49 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.10 2.15 6.33 -2.39 -0.02 2.13 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.08 2.24 8.03 -2.39 -0.02 2.22 16 43 H 0.09 1.89 4.92 -2.39 -0.01 1.88 16 44 H 0.03 1.51 8.07 -2.39 -0.02 1.50 16 45 H 0.00 0.27 7.35 -2.39 -0.02 0.25 16 46 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -82.61 393.70 7.51 -75.10 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.00 Total: 5.92 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 7.07 Total: 22.31 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -2.75 Total: -99.29 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: 0.16 Total: -48.97 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -82.61 7.51 -75.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747031575.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.361 kcal (2) G-P(sol) polarization free energy of solvation -82.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds