Wall clock time and date at job start Tue Mar 31 2020 22:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 5 5 C 1.46901 * 110.99793 * 85.00144 * 4 2 1 6 6 C 1.50701 * 109.46921 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99566 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46835 * 180.02562 * 9 8 6 11 11 H 1.07995 * 120.00280 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99788 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00327 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47061 * 60.00295 * 14 12 10 16 16 H 1.48505 * 109.46988 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47116 * 300.00069 * 14 12 10 18 18 C 1.50701 * 109.47458 * 120.00104 * 2 1 3 19 19 C 1.38322 * 119.87610 * 79.71838 * 18 2 1 20 20 C 1.38017 * 120.11823 * 179.76921 * 19 18 2 21 21 C 1.39344 * 119.87934 * 0.48883 * 20 19 18 22 22 C 1.48369 * 120.12425 * 179.74343 * 21 20 19 23 23 C 1.39772 * 120.90524 * 179.74116 * 22 21 20 24 24 C 1.37978 * 119.01633 * 179.73243 * 23 22 21 25 25 N 1.31917 * 120.88527 * 0.55705 * 24 23 22 26 26 C 1.31929 * 122.00400 * 359.72376 * 25 24 23 27 27 C 1.37978 * 120.88284 * 359.97438 * 26 25 24 28 28 C 1.39354 * 119.75456 * 359.76803 * 21 20 19 29 29 C 1.38013 * 119.87814 * 0.02562 * 28 21 20 30 30 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 31 31 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 32 32 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 33 33 H 1.00899 * 110.99995 * 321.04542 * 4 2 1 34 34 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 35 35 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 36 36 H 0.96995 * 120.00011 * 0.02562 * 8 6 5 37 37 H 1.09001 * 109.47487 * 300.00114 * 9 8 6 38 38 H 1.09002 * 109.47182 * 60.00342 * 9 8 6 39 39 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 40 40 H 1.08003 * 119.94192 * 0.02562 * 19 18 2 41 41 H 1.08006 * 120.05924 * 180.23780 * 20 19 18 42 42 H 1.07997 * 120.48745 * 359.97438 * 23 22 21 43 43 H 1.08002 * 119.55049 * 180.27695 * 24 23 22 44 44 H 1.08002 * 119.55964 * 179.97438 * 26 25 24 45 45 H 1.07993 * 120.49536 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.06197 * 179.97438 * 28 21 20 47 47 H 1.07996 * 119.94119 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5884 -0.5216 -3.5558 7 8 2.8686 -1.6984 -3.4699 8 7 2.7285 0.1206 -4.7324 9 6 3.2199 -0.6030 -5.9077 10 6 3.2844 0.3358 -7.0848 11 1 2.9894 1.3682 -6.9690 12 6 3.7202 -0.1234 -8.3097 13 7 4.0790 -1.3807 -8.4509 14 14 3.7995 1.0402 -9.7689 15 1 4.7212 2.1622 -9.4578 16 1 4.2977 0.3068 -10.9603 17 1 2.4434 1.5766 -10.0486 18 6 2.0324 -0.7104 1.2304 19 6 2.0603 -2.0929 1.2647 20 6 2.5239 -2.7486 2.3872 21 6 2.9548 -2.0155 3.4910 22 6 3.4488 -2.7149 4.7027 23 6 3.8900 -1.9957 5.8170 24 6 4.3363 -2.6859 6.9253 25 7 4.3601 -4.0048 6.9373 26 6 3.9581 -4.7209 5.9048 27 6 3.4911 -4.1108 4.7587 28 6 2.9194 -0.6229 3.4530 29 6 2.4579 0.0225 2.3237 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.4495 -1.4980 -1.4100 34 1 2.7588 1.0462 -2.1183 35 1 1.0870 0.6163 -2.5525 36 1 2.5041 1.0617 -4.8011 37 1 4.2154 -0.9964 -5.7022 38 1 2.5437 -1.4268 -6.1362 39 1 4.3859 -1.7036 -9.3126 40 1 1.7225 -2.6603 0.4100 41 1 2.5488 -3.8281 2.4115 42 1 3.8779 -0.9158 5.8121 43 1 4.6749 -2.1389 7.7928 44 1 3.9951 -5.7990 5.9573 45 1 3.1640 -4.7031 3.9170 46 1 3.2518 -0.0498 4.3058 47 1 2.4305 1.1017 2.2929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775527690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:49 Heat of formation + Delta-G solvation = 18.554902 kcal Electronic energy + Delta-G solvation = -26868.605535 eV Core-core repulsion = 23015.642365 eV Total energy + Delta-G solvation = -3852.963170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.69368 -39.59318 -38.79141 -36.66903 -34.20357 -33.72400 -32.34863 -31.94525 -31.23190 -30.93925 -28.92685 -27.72083 -25.71884 -24.67164 -24.25978 -22.59159 -22.45167 -21.87049 -20.58560 -19.73146 -18.07079 -17.36556 -16.62658 -16.39242 -16.08724 -15.80336 -15.39513 -15.17412 -15.00367 -14.85165 -14.43141 -14.35950 -14.23161 -14.12445 -13.89863 -13.64737 -13.36345 -13.31919 -12.70870 -12.65879 -12.51293 -12.26386 -12.20387 -11.95580 -11.70320 -11.49369 -11.20373 -11.01366 -11.00514 -10.87886 -10.51607 -10.33599 -9.84650 -9.53676 -9.43087 -9.16164 -9.09167 -8.74876 -8.57010 -8.39123 -7.89021 -6.18060 -4.25344 0.27015 0.78866 1.20294 1.61644 3.23713 3.28578 3.29973 3.34058 3.35848 3.68045 3.81444 4.09031 4.11943 4.27051 4.31854 4.43767 4.57259 4.64379 4.69399 4.73108 4.77865 4.92093 4.97533 5.13398 5.17819 5.25459 5.29713 5.31643 5.35307 5.40143 5.46648 5.47019 5.55423 5.61374 5.74883 5.77260 5.81561 5.87900 6.16505 6.32157 6.34053 6.36764 6.70845 6.86400 7.27056 7.31319 7.42368 7.50442 7.62653 7.65115 7.95604 8.61049 8.76590 9.09161 9.41394 10.92035 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022241 B = 0.001607 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.653469 B =17414.481797 C =18070.264174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.119 3.881 3 H 0.089 0.911 4 N -0.664 5.664 5 C 0.040 3.960 6 C 0.496 3.504 7 O -0.544 6.544 8 N -0.714 5.714 9 C 0.251 3.749 10 C -0.545 4.545 11 H 0.062 0.938 12 C 0.064 3.936 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.275 1.275 18 C -0.050 4.050 19 C -0.094 4.094 20 C -0.099 4.099 21 C -0.069 4.069 22 C 0.010 3.990 23 C -0.171 4.171 24 C 0.101 3.899 25 N -0.493 5.493 26 C 0.102 3.898 27 C -0.169 4.169 28 C -0.101 4.101 29 C -0.116 4.116 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.352 0.648 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.390 0.610 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.267 0.733 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.137 0.863 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.138 0.862 46 H 0.124 0.876 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.207 2.309 28.451 29.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.009 3.991 3 H 0.107 0.893 4 N -0.296 5.296 5 C -0.092 4.092 6 C 0.280 3.720 7 O -0.422 6.422 8 N -0.363 5.363 9 C 0.130 3.870 10 C -0.583 4.583 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.522 5.522 14 Si 0.731 3.269 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.051 4.051 19 C -0.112 4.112 20 C -0.117 4.117 21 C -0.069 4.069 22 C 0.002 3.998 23 C -0.190 4.190 24 C -0.055 4.055 25 N -0.202 5.202 26 C -0.054 4.054 27 C -0.189 4.189 28 C -0.119 4.119 29 C -0.134 4.134 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.172 0.828 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.222 0.778 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.154 0.846 43 H 0.173 0.827 44 H 0.174 0.826 45 H 0.156 0.844 46 H 0.142 0.858 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.947 0.941 29.234 29.664 hybrid contribution -1.205 1.603 -1.960 2.805 sum -6.152 2.545 27.274 28.074 Atomic orbital electron populations 1.22515 0.96020 1.02781 1.02563 1.20516 0.92776 0.97488 0.88322 0.89279 1.60217 1.58013 1.09085 1.02276 1.21879 1.00801 0.96116 0.90443 1.20332 0.79447 0.87913 0.84304 1.90666 1.50699 1.16089 1.84699 1.46444 1.65470 1.13864 1.10546 1.19087 0.95014 0.92431 0.80454 1.21192 1.46310 0.96465 0.94374 0.91964 1.24953 0.94789 0.95333 0.98915 1.69961 1.42805 1.14328 1.25136 0.86472 0.78490 0.80542 0.81372 1.20066 1.21052 1.20088 1.19895 0.97017 0.93860 0.94331 1.20932 0.98767 0.94023 0.97478 1.21220 0.98017 0.99881 0.92584 1.18618 1.01929 0.93228 0.93111 1.19215 0.94414 0.93167 0.92968 1.22231 1.01236 1.01491 0.94064 1.22690 0.95291 0.90151 0.97399 1.67648 1.15195 1.08122 1.29247 1.22712 0.93790 1.00402 0.88506 1.22272 1.01929 0.94466 1.00195 1.21113 0.99299 0.93219 0.98268 1.20916 0.99682 0.99857 0.92986 0.91737 0.91975 0.91984 0.82767 0.88522 0.92665 0.77803 0.95533 0.95607 0.92373 0.85353 0.85688 0.84572 0.82680 0.82593 0.84418 0.85801 0.85741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 9.14 37.16 0.34 -1.09 16 2 C 0.12 1.13 2.78 -68.86 -0.19 0.94 16 3 H 0.09 0.77 7.65 -51.93 -0.40 0.37 16 4 N -0.66 -8.38 5.33 -109.21 -0.58 -8.96 16 5 C 0.04 0.53 5.97 -4.97 -0.03 0.50 16 6 C 0.50 9.53 7.87 -10.98 -0.09 9.44 16 7 O -0.54 -12.80 16.20 5.56 0.09 -12.71 16 8 N -0.71 -14.61 5.55 -61.47 -0.34 -14.95 16 9 C 0.25 6.60 5.43 -5.19 -0.03 6.57 16 10 C -0.55 -14.66 9.28 -34.44 -0.32 -14.98 16 11 H 0.06 1.55 7.60 -52.49 -0.40 1.16 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 14 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 C -0.05 -0.50 4.96 -104.56 -0.52 -1.02 16 19 C -0.09 -0.97 9.31 -39.63 -0.37 -1.34 16 20 C -0.10 -0.95 9.45 -39.25 -0.37 -1.32 16 21 C -0.07 -0.65 5.88 -104.90 -0.62 -1.26 16 22 C 0.01 0.09 5.91 -104.58 -0.62 -0.53 16 23 C -0.17 -1.33 9.50 -39.10 -0.37 -1.70 16 24 C 0.10 0.81 11.17 -17.61 -0.20 0.61 16 25 N -0.49 -4.80 10.35 -13.34 -0.14 -4.94 16 26 C 0.10 0.85 11.17 -17.61 -0.20 0.65 16 27 C -0.17 -1.39 9.50 -39.10 -0.37 -1.76 16 28 C -0.10 -0.86 9.45 -39.25 -0.37 -1.23 16 29 C -0.12 -1.01 9.65 -39.63 -0.38 -1.40 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.48 7.45 -51.93 -0.39 0.10 16 32 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 33 H 0.35 4.59 7.51 -39.29 -0.30 4.30 16 34 H 0.10 1.12 8.06 -51.93 -0.42 0.71 16 35 H 0.06 0.60 7.44 -51.93 -0.39 0.22 16 36 H 0.39 6.73 8.32 -40.82 -0.34 6.39 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.13 1.32 7.24 -52.48 -0.38 0.94 16 41 H 0.13 0.99 6.30 -52.48 -0.33 0.66 16 42 H 0.14 0.75 6.34 -52.49 -0.33 0.42 16 43 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 45 H 0.14 0.89 6.34 -52.49 -0.33 0.55 16 46 H 0.12 0.78 6.30 -52.49 -0.33 0.45 16 47 H 0.12 0.83 8.03 -52.49 -0.42 0.41 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -34.19 395.01 -10.52 -44.71 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.42 Total: 7.74 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -4.80 Total: -7.25 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.32 Total: -54.08 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.19 -10.52 -44.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775527690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.266 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds