Wall clock time and date at job start Tue Mar 31 2020 22:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 5 5 C 1.46901 * 110.99793 * 85.00144 * 4 2 1 6 6 C 1.50701 * 109.46921 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99566 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46835 * 180.02562 * 9 8 6 11 11 H 1.07995 * 120.00280 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99788 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00327 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47061 * 60.00295 * 14 12 10 16 16 H 1.48505 * 109.46988 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47116 * 300.00069 * 14 12 10 18 18 C 1.50701 * 109.47458 * 120.00104 * 2 1 3 19 19 C 1.38322 * 119.87610 * 79.71838 * 18 2 1 20 20 C 1.38017 * 120.11823 * 179.76921 * 19 18 2 21 21 C 1.39344 * 119.87934 * 0.48883 * 20 19 18 22 22 C 1.48369 * 120.12425 * 179.74343 * 21 20 19 23 23 C 1.39772 * 120.90524 * 179.74116 * 22 21 20 24 24 C 1.37978 * 119.01633 * 179.73243 * 23 22 21 25 25 N 1.31917 * 120.88527 * 0.55705 * 24 23 22 26 26 C 1.31929 * 122.00400 * 359.72376 * 25 24 23 27 27 C 1.37978 * 120.88284 * 359.97438 * 26 25 24 28 28 C 1.39354 * 119.75456 * 359.76803 * 21 20 19 29 29 C 1.38013 * 119.87814 * 0.02562 * 28 21 20 30 30 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 31 31 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 32 32 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 33 33 H 1.00899 * 110.99995 * 321.04542 * 4 2 1 34 34 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 35 35 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 36 36 H 0.96995 * 120.00011 * 0.02562 * 8 6 5 37 37 H 1.09001 * 109.47487 * 300.00114 * 9 8 6 38 38 H 1.09002 * 109.47182 * 60.00342 * 9 8 6 39 39 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 40 40 H 1.08003 * 119.94192 * 0.02562 * 19 18 2 41 41 H 1.08006 * 120.05924 * 180.23780 * 20 19 18 42 42 H 1.07997 * 120.48745 * 359.97438 * 23 22 21 43 43 H 1.08002 * 119.55049 * 180.27695 * 24 23 22 44 44 H 1.08002 * 119.55964 * 179.97438 * 26 25 24 45 45 H 1.07993 * 120.49536 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.06197 * 179.97438 * 28 21 20 47 47 H 1.07996 * 119.94119 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5884 -0.5216 -3.5558 7 8 2.8686 -1.6984 -3.4699 8 7 2.7285 0.1206 -4.7324 9 6 3.2199 -0.6030 -5.9077 10 6 3.2844 0.3358 -7.0848 11 1 2.9894 1.3682 -6.9690 12 6 3.7202 -0.1234 -8.3097 13 7 4.0790 -1.3807 -8.4509 14 14 3.7995 1.0402 -9.7689 15 1 4.7212 2.1622 -9.4578 16 1 4.2977 0.3068 -10.9603 17 1 2.4434 1.5766 -10.0486 18 6 2.0324 -0.7104 1.2304 19 6 2.0603 -2.0929 1.2647 20 6 2.5239 -2.7486 2.3872 21 6 2.9548 -2.0155 3.4910 22 6 3.4488 -2.7149 4.7027 23 6 3.8900 -1.9957 5.8170 24 6 4.3363 -2.6859 6.9253 25 7 4.3601 -4.0048 6.9373 26 6 3.9581 -4.7209 5.9048 27 6 3.4911 -4.1108 4.7587 28 6 2.9194 -0.6229 3.4530 29 6 2.4579 0.0225 2.3237 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.4495 -1.4980 -1.4100 34 1 2.7588 1.0462 -2.1183 35 1 1.0870 0.6163 -2.5525 36 1 2.5041 1.0617 -4.8011 37 1 4.2154 -0.9964 -5.7022 38 1 2.5437 -1.4268 -6.1362 39 1 4.3859 -1.7036 -9.3126 40 1 1.7225 -2.6603 0.4100 41 1 2.5488 -3.8281 2.4115 42 1 3.8779 -0.9158 5.8121 43 1 4.6749 -2.1389 7.7928 44 1 3.9951 -5.7990 5.9573 45 1 3.1640 -4.7031 3.9170 46 1 3.2518 -0.0498 4.3058 47 1 2.4305 1.1017 2.2929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775527690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:48 Heat of formation + Delta-G solvation = -4.319226 kcal Electronic energy + Delta-G solvation = -26869.597432 eV Core-core repulsion = 23015.642365 eV Total energy + Delta-G solvation = -3853.955067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.32241 -40.62058 -40.00660 -37.57189 -36.08922 -34.49944 -34.31096 -32.55682 -32.11257 -31.59243 -29.82502 -29.31060 -26.99594 -25.43108 -24.93160 -24.27484 -23.22216 -22.63539 -21.40287 -21.26007 -19.13412 -18.56104 -17.70040 -17.37619 -17.08121 -16.93452 -16.75233 -16.45876 -16.03435 -15.80400 -15.51113 -15.34365 -14.99547 -14.90344 -14.79139 -14.63136 -14.34571 -14.09120 -13.98665 -13.95889 -13.79033 -13.39857 -13.20266 -12.93492 -12.86076 -12.78278 -12.64874 -12.38398 -12.23525 -11.89160 -11.66180 -11.50770 -11.18512 -10.78755 -10.72082 -10.47179 -10.12228 -9.84802 -9.81358 -9.40684 -9.14778 -8.28617 -6.45546 -0.38759 0.20256 0.51842 0.94162 1.43466 1.47525 1.55739 1.81308 2.29712 2.49755 2.71922 3.06176 3.08202 3.33100 3.46437 3.58893 3.72178 3.84177 3.95881 4.04016 4.08863 4.13724 4.19450 4.27573 4.32319 4.38605 4.49942 4.52628 4.64215 4.71495 4.79143 4.84551 4.86346 4.90190 5.10722 5.11905 5.14023 5.18350 5.24968 5.25249 5.48454 5.49612 5.61585 5.67009 5.71608 5.75643 5.85565 6.00754 6.08141 6.30959 6.65867 6.96062 7.02349 7.24282 7.54252 8.83271 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022241 B = 0.001607 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.653469 B =17414.481797 C =18070.264174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.124 3.876 3 H 0.106 0.894 4 N -0.683 5.683 5 C 0.058 3.942 6 C 0.491 3.509 7 O -0.594 6.594 8 N -0.709 5.709 9 C 0.267 3.733 10 C -0.557 4.557 11 H 0.085 0.915 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.985 3.015 15 H -0.262 1.262 16 H -0.287 1.287 17 H -0.261 1.261 18 C -0.063 4.063 19 C -0.112 4.112 20 C -0.112 4.112 21 C -0.077 4.077 22 C -0.006 4.006 23 C -0.170 4.170 24 C 0.092 3.908 25 N -0.519 5.519 26 C 0.092 3.908 27 C -0.177 4.177 28 C -0.103 4.103 29 C -0.117 4.117 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.345 0.655 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.409 0.591 37 H -0.016 1.016 38 H -0.014 1.014 39 H 0.268 0.732 40 H 0.118 0.882 41 H 0.132 0.868 42 H 0.160 0.840 43 H 0.180 0.820 44 H 0.175 0.825 45 H 0.148 0.852 46 H 0.148 0.852 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.855 5.657 29.454 30.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.015 3.985 3 H 0.124 0.876 4 N -0.315 5.315 5 C -0.074 4.074 6 C 0.278 3.722 7 O -0.474 6.474 8 N -0.360 5.360 9 C 0.144 3.856 10 C -0.595 4.595 11 H 0.103 0.897 12 C -0.197 4.197 13 N -0.570 5.570 14 Si 0.808 3.192 15 H -0.187 1.187 16 H -0.212 1.212 17 H -0.186 1.186 18 C -0.063 4.063 19 C -0.130 4.130 20 C -0.130 4.130 21 C -0.077 4.077 22 C -0.014 4.014 23 C -0.189 4.189 24 C -0.064 4.064 25 N -0.229 5.229 26 C -0.064 4.064 27 C -0.197 4.197 28 C -0.121 4.121 29 C -0.135 4.135 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.165 0.835 34 H 0.140 0.860 35 H 0.106 0.894 36 H 0.245 0.755 37 H 0.002 0.998 38 H 0.004 0.996 39 H 0.077 0.923 40 H 0.136 0.864 41 H 0.150 0.850 42 H 0.177 0.823 43 H 0.197 0.803 44 H 0.192 0.808 45 H 0.166 0.834 46 H 0.166 0.834 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.620 4.339 30.281 31.102 hybrid contribution -0.991 0.486 -2.166 2.431 sum -6.612 4.826 28.115 29.282 Atomic orbital electron populations 1.22454 0.94819 1.02579 1.03449 1.20573 0.93683 0.97714 0.86561 0.87582 1.60202 1.58952 1.09346 1.03030 1.21792 1.02635 0.95495 0.87481 1.21497 0.77811 0.87560 0.85310 1.90644 1.52555 1.18711 1.85540 1.46169 1.65592 1.14576 1.09623 1.18501 0.91976 0.92124 0.83007 1.21613 1.45999 0.97405 0.94499 0.89677 1.26081 0.94015 0.97049 1.02511 1.70135 1.43959 1.16834 1.26066 0.85202 0.79237 0.78050 0.76683 1.18669 1.21226 1.18560 1.20048 0.97526 0.93685 0.95085 1.20982 0.99799 0.94715 0.97543 1.21377 0.98339 1.00518 0.92769 1.18787 1.01890 0.93915 0.93090 1.19395 0.95074 0.93613 0.93348 1.22489 1.00373 1.02665 0.93408 1.23148 0.94946 0.89878 0.98385 1.67674 1.16051 1.09165 1.29982 1.23052 0.93615 1.01415 0.88322 1.22462 1.01904 0.94685 1.00607 1.21439 0.98639 0.92999 0.99070 1.21203 0.98822 1.01079 0.92422 0.90372 0.91439 0.92815 0.83516 0.85982 0.89353 0.75547 0.99810 0.99555 0.92297 0.86387 0.85028 0.82284 0.80270 0.80795 0.83431 0.83421 0.83286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.14 71.98 0.66 -1.72 16 2 C 0.12 2.07 2.78 44.17 0.12 2.20 16 3 H 0.11 1.42 7.65 -2.39 -0.02 1.41 16 4 N -0.68 -16.51 5.33 -499.44 -2.66 -19.18 16 5 C 0.06 1.39 5.97 85.56 0.51 1.90 16 6 C 0.49 18.91 7.87 87.66 0.69 19.60 16 7 O -0.59 -29.13 16.20 -3.03 -0.05 -29.18 16 8 N -0.71 -29.05 5.55 -466.78 -2.59 -31.64 16 9 C 0.27 14.61 5.43 85.63 0.46 15.08 16 10 C -0.56 -30.07 9.28 25.60 0.24 -29.84 16 11 H 0.09 4.10 7.60 -2.91 -0.02 4.07 16 12 C 0.00 0.17 5.46 84.66 0.46 0.63 16 13 N -0.93 -56.25 13.29 21.45 0.28 -55.96 16 14 Si 0.99 41.92 29.54 68.60 2.03 43.95 16 15 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 16 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 17 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 18 C -0.06 -1.16 4.96 -19.82 -0.10 -1.25 16 19 C -0.11 -2.35 9.31 22.24 0.21 -2.14 16 20 C -0.11 -2.18 9.45 22.48 0.21 -1.97 16 21 C -0.08 -1.38 5.88 -20.04 -0.12 -1.50 16 22 C -0.01 -0.11 5.91 -19.84 -0.12 -0.23 16 23 C -0.17 -2.37 9.50 22.58 0.21 -2.16 16 24 C 0.09 1.36 11.17 84.62 0.95 2.31 16 25 N -0.52 -9.78 10.35 -196.12 -2.03 -11.81 16 26 C 0.09 1.50 11.17 84.62 0.95 2.45 16 27 C -0.18 -2.89 9.50 22.58 0.21 -2.67 16 28 C -0.10 -1.55 9.45 22.49 0.21 -1.34 16 29 C -0.12 -1.76 9.65 22.24 0.21 -1.55 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.85 7.45 -2.39 -0.02 0.83 16 32 H 0.05 0.82 8.13 -2.39 -0.02 0.81 16 33 H 0.35 9.09 7.51 -89.69 -0.67 8.41 16 34 H 0.12 2.39 8.06 -2.39 -0.02 2.37 16 35 H 0.09 1.60 7.44 -2.39 -0.02 1.59 16 36 H 0.41 13.45 8.32 -92.71 -0.77 12.68 16 37 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 38 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 39 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 40 H 0.12 2.61 7.24 -2.91 -0.02 2.59 16 41 H 0.13 2.19 6.30 -2.91 -0.02 2.18 16 42 H 0.16 1.33 6.34 -2.91 -0.02 1.31 16 43 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 44 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 45 H 0.15 1.94 6.34 -2.91 -0.02 1.92 16 46 H 0.15 1.40 6.30 -2.91 -0.02 1.38 16 47 H 0.15 1.44 8.03 -2.91 -0.02 1.41 16 Total: -1.00 -77.82 395.01 0.53 -77.29 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: -0.43 Total: 28.74 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 5.98 Total: -2.21 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -7.00 Total: -118.59 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.05 Total: -29.18 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -77.82 0.53 -77.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775527690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.971 kcal (2) G-P(sol) polarization free energy of solvation -77.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds