Wall clock time and date at job start Tue Mar 31 2020 22:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 5 5 C 1.46901 * 110.99870 * 274.99984 * 4 2 1 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00396 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99719 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46785 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00107 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99714 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00121 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00018 * 180.02562 * 12 10 9 15 15 H 1.48491 * 109.47248 * 90.00231 * 14 12 10 16 16 H 1.48501 * 109.47269 * 210.00197 * 14 12 10 17 17 H 1.48506 * 109.46892 * 330.00100 * 14 12 10 18 18 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 19 19 C 1.38327 * 119.87627 * 279.72277 * 18 2 1 20 20 C 1.38016 * 120.12254 * 179.76390 * 19 18 2 21 21 C 1.39352 * 119.87654 * 0.53617 * 20 19 18 22 22 C 1.48361 * 120.12374 * 179.69878 * 21 20 19 23 23 C 1.39770 * 120.90674 * 179.74228 * 22 21 20 24 24 C 1.37972 * 119.01955 * 179.73093 * 23 22 21 25 25 N 1.31926 * 120.88710 * 0.55693 * 24 23 22 26 26 C 1.31923 * 122.00105 * 359.71601 * 25 24 23 27 27 C 1.37987 * 120.88143 * 359.97438 * 26 25 24 28 28 C 1.39356 * 119.75386 * 359.71961 * 21 20 19 29 29 C 1.38013 * 119.87516 * 0.02562 * 28 21 20 30 30 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 32 32 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 33 33 H 1.00901 * 110.99869 * 151.04696 * 4 2 1 34 34 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 35 35 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 36 36 H 0.96997 * 120.00713 * 359.97438 * 8 6 5 37 37 H 1.08999 * 109.47195 * 299.98994 * 9 8 6 38 38 H 1.08995 * 109.47470 * 59.99670 * 9 8 6 39 39 H 0.97000 * 119.99968 * 179.97438 * 13 12 10 40 40 H 1.08004 * 119.93984 * 0.02562 * 19 18 2 41 41 H 1.07998 * 120.06219 * 180.23253 * 20 19 18 42 42 H 1.08003 * 120.48516 * 359.97438 * 23 22 21 43 43 H 1.08005 * 119.55892 * 180.27382 * 24 23 22 44 44 H 1.07999 * 119.55992 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.49049 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.06090 * 179.97438 * 28 21 20 47 47 H 1.08003 * 119.93798 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5885 -0.5214 3.5557 7 8 2.8688 -1.6983 3.4701 8 7 2.7286 0.1207 4.7324 9 6 3.2200 -0.6028 5.9077 10 6 3.2845 0.3361 7.0847 11 1 2.9895 1.3685 6.9688 12 6 3.7203 -0.1230 8.3096 13 7 4.0801 -1.3801 8.4507 14 14 3.7996 1.0405 9.7689 15 1 2.5057 1.0107 10.4967 16 1 4.8910 0.6157 10.6819 17 1 4.0654 2.4202 9.2879 18 6 2.0323 -0.7104 -1.2304 19 6 2.0710 -2.0928 -1.2603 20 6 2.5255 -2.7488 -2.3864 21 6 2.9564 -2.0157 -3.4903 22 6 3.4523 -2.7151 -4.7011 23 6 3.8834 -1.9962 -5.8195 24 6 4.3424 -2.6862 -6.9226 25 7 4.3670 -4.0052 -6.9344 26 6 3.9641 -4.7211 -5.9022 27 6 3.4961 -4.1110 -4.7564 28 6 2.9202 -0.6231 -3.4527 29 6 2.4588 0.0223 -2.3234 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.9173 -1.1205 1.0288 34 1 2.7589 1.0462 2.1182 35 1 1.0871 0.6164 2.5525 36 1 2.5041 1.0619 4.8011 37 1 2.5438 -1.4265 6.1363 38 1 4.2155 -0.9962 5.7022 39 1 4.3871 -1.7030 9.3123 40 1 1.7409 -2.6600 -0.4025 41 1 2.5517 -3.8282 -2.4101 42 1 3.8613 -0.9164 -5.8187 43 1 4.6818 -2.1393 -7.7900 44 1 4.0010 -5.7992 -5.9547 45 1 3.1675 -4.7033 -3.9153 46 1 3.2533 -0.0500 -4.3053 47 1 2.4307 1.1015 -2.2929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775527692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:53 Heat of formation + Delta-G solvation = 18.499195 kcal Electronic energy + Delta-G solvation = -26875.967601 eV Core-core repulsion = 23023.002015 eV Total energy + Delta-G solvation = -3852.965586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.75146 -39.64590 -38.78589 -36.57719 -34.20181 -33.72068 -32.34382 -31.99626 -31.27201 -30.99757 -28.94476 -27.80515 -25.84950 -24.59343 -24.29932 -22.55211 -22.43005 -21.82622 -20.45990 -19.72141 -18.11429 -17.41014 -16.69128 -16.45735 -16.19153 -15.72218 -15.55670 -15.19716 -14.97247 -14.85709 -14.42650 -14.37583 -14.27919 -14.12784 -13.95563 -13.71839 -13.40861 -12.99801 -12.83461 -12.62723 -12.36088 -12.24347 -12.14448 -11.94034 -11.77994 -11.48151 -11.15813 -10.99663 -10.97617 -10.88229 -10.57950 -10.33360 -9.88503 -9.57546 -9.41418 -9.24174 -9.07767 -8.75032 -8.59013 -8.47958 -7.88675 -6.18121 -4.25226 0.19532 0.74937 1.11780 1.53689 3.22847 3.28439 3.29255 3.31227 3.36357 3.65933 3.76687 4.03367 4.07436 4.24775 4.29174 4.42775 4.45410 4.58515 4.67805 4.68265 4.75195 5.01763 5.07131 5.17572 5.18137 5.24339 5.26885 5.34660 5.37544 5.41660 5.43951 5.55045 5.59863 5.65224 5.73095 5.77219 5.78232 6.07877 6.11847 6.25402 6.28693 6.29932 6.64031 6.87725 7.28630 7.32902 7.42874 7.50702 7.58880 7.65568 7.95701 8.61542 8.76968 9.09634 9.41576 10.92037 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022303 B = 0.001608 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.133768 B =17406.712718 C =18066.785807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.122 3.878 3 H 0.053 0.947 4 N -0.665 5.665 5 C 0.039 3.961 6 C 0.497 3.503 7 O -0.544 6.544 8 N -0.714 5.714 9 C 0.251 3.749 10 C -0.544 4.544 11 H 0.063 0.937 12 C 0.064 3.936 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.076 4.076 19 C -0.096 4.096 20 C -0.100 4.100 21 C -0.064 4.064 22 C 0.008 3.992 23 C -0.170 4.170 24 C 0.101 3.899 25 N -0.492 5.492 26 C 0.102 3.898 27 C -0.168 4.168 28 C -0.102 4.102 29 C -0.113 4.113 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.353 0.647 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.390 0.610 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.266 0.734 40 H 0.140 0.860 41 H 0.127 0.873 42 H 0.137 0.863 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.139 0.861 46 H 0.125 0.875 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.352 2.475 -29.070 29.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.012 3.988 3 H 0.071 0.929 4 N -0.299 5.299 5 C -0.093 4.093 6 C 0.280 3.720 7 O -0.422 6.422 8 N -0.363 5.363 9 C 0.130 3.870 10 C -0.583 4.583 11 H 0.081 0.919 12 C -0.140 4.140 13 N -0.522 5.522 14 Si 0.731 3.269 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.077 4.077 19 C -0.114 4.114 20 C -0.118 4.118 21 C -0.064 4.064 22 C 0.000 4.000 23 C -0.189 4.189 24 C -0.055 4.055 25 N -0.201 5.201 26 C -0.054 4.054 27 C -0.187 4.187 28 C -0.121 4.121 29 C -0.132 4.132 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.174 0.826 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.222 0.778 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.158 0.842 41 H 0.145 0.855 42 H 0.154 0.846 43 H 0.174 0.826 44 H 0.175 0.825 45 H 0.156 0.844 46 H 0.143 0.857 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.366 0.790 -29.537 29.868 hybrid contribution 0.439 2.051 1.502 2.580 sum -3.927 2.841 -28.035 28.451 Atomic orbital electron populations 1.21799 0.93296 1.02933 1.01362 1.20503 0.96359 0.95170 0.86738 0.92874 1.60267 1.35074 1.31862 1.02658 1.21903 1.02161 0.94321 0.90925 1.20323 0.79214 0.87874 0.84543 1.90665 1.50740 1.15882 1.84869 1.46446 1.65447 1.13838 1.10603 1.19092 0.94955 0.92494 0.80479 1.21230 1.46158 0.96498 0.94367 0.91913 1.24956 0.94799 0.95342 0.98924 1.69976 1.42906 1.14354 1.25000 0.86412 0.77859 0.80699 0.81910 1.20444 1.21003 1.19780 1.20093 0.98074 0.94151 0.95353 1.21147 0.98080 0.93982 0.98157 1.21279 0.97994 1.00032 0.92508 1.18669 1.01384 0.93224 0.93131 1.19205 0.94654 0.93197 0.92946 1.22232 1.01176 1.01490 0.94043 1.22699 0.95233 0.90152 0.97432 1.67656 1.15201 1.08114 1.29128 1.22725 0.93741 1.00441 0.88471 1.22283 1.01765 0.94432 1.00269 1.21135 0.99429 0.93251 0.98256 1.20972 0.99272 0.99924 0.92985 0.91583 0.92129 0.92545 0.82620 0.92768 0.88468 0.77800 0.95509 0.95613 0.92437 0.84175 0.85492 0.84570 0.82642 0.82535 0.84360 0.85702 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.39 37.16 0.35 -0.90 16 2 C 0.12 1.20 2.81 -68.86 -0.19 1.00 16 3 H 0.05 0.47 7.65 -51.93 -0.40 0.08 16 4 N -0.66 -8.52 5.30 -109.22 -0.58 -9.10 16 5 C 0.04 0.53 5.97 -4.98 -0.03 0.50 16 6 C 0.50 9.59 7.87 -10.99 -0.09 9.50 16 7 O -0.54 -12.82 16.20 5.56 0.09 -12.73 16 8 N -0.71 -14.67 5.55 -61.47 -0.34 -15.02 16 9 C 0.25 6.60 5.43 -5.19 -0.03 6.57 16 10 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 11 H 0.06 1.57 7.60 -52.49 -0.40 1.18 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 14 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 C -0.08 -0.73 4.72 -104.56 -0.49 -1.22 16 19 C -0.10 -0.96 8.98 -39.63 -0.36 -1.31 16 20 C -0.10 -0.91 9.45 -39.25 -0.37 -1.28 16 21 C -0.06 -0.57 5.88 -104.90 -0.62 -1.19 16 22 C 0.01 0.07 5.91 -104.59 -0.62 -0.55 16 23 C -0.17 -1.26 9.50 -39.11 -0.37 -1.63 16 24 C 0.10 0.78 11.17 -17.61 -0.20 0.58 16 25 N -0.49 -4.65 10.35 -13.34 -0.14 -4.78 16 26 C 0.10 0.82 11.17 -17.60 -0.20 0.63 16 27 C -0.17 -1.32 9.50 -39.10 -0.37 -1.69 16 28 C -0.10 -0.83 9.45 -39.25 -0.37 -1.20 16 29 C -0.11 -0.94 9.65 -39.63 -0.38 -1.32 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.35 4.90 7.68 -39.29 -0.30 4.59 16 34 H 0.05 0.62 8.06 -51.93 -0.42 0.20 16 35 H 0.10 1.14 7.44 -51.93 -0.39 0.75 16 36 H 0.39 6.78 8.32 -40.82 -0.34 6.44 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.14 1.50 7.70 -52.48 -0.40 1.10 16 41 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 42 H 0.14 0.70 6.34 -52.48 -0.33 0.37 16 43 H 0.16 0.78 8.06 -52.48 -0.42 0.35 16 44 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 45 H 0.14 0.84 6.34 -52.49 -0.33 0.51 16 46 H 0.13 0.74 6.30 -52.49 -0.33 0.41 16 47 H 0.13 0.81 8.03 -52.48 -0.42 0.39 16 LS Contribution 395.34 15.07 5.96 5.96 Total: -1.00 -33.74 395.34 -10.50 -44.24 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.45 Total: 7.86 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -4.75 Total: -6.85 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.32 Total: -54.16 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.74 -10.50 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775527692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.738 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds