Wall clock time and date at job start Tue Mar 31 2020 22:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81400 * 103.00191 * 2 1 4 4 C 1.52993 * 109.47377 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47212 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47508 * 305.00159 * 5 4 3 7 7 C 1.52999 * 109.47325 * 185.00018 * 5 4 3 8 8 N 1.46900 * 109.47236 * 65.00368 * 5 4 3 9 9 C 1.46898 * 111.00345 * 205.00163 * 8 5 4 10 10 C 1.53002 * 109.47365 * 179.97438 * 9 8 5 11 11 H 1.09008 * 109.46827 * 304.99847 * 10 9 8 12 12 O 1.42895 * 109.47309 * 64.99401 * 10 9 8 13 13 C 1.52995 * 109.47318 * 185.00107 * 10 9 8 14 14 O 1.42893 * 109.47348 * 174.99801 * 13 10 9 15 15 C 1.35677 * 117.00219 * 179.97438 * 14 13 10 16 16 C 1.39308 * 119.81621 * 359.72303 * 15 14 13 17 17 C 1.36444 * 120.18797 * 179.75997 * 16 15 14 18 18 C 1.40835 * 119.80339 * 0.51454 * 17 16 15 19 19 C 1.41220 * 120.17527 * 179.72057 * 18 17 16 20 20 H 1.07997 * 120.00342 * 155.16567 * 19 18 17 21 21 C 1.39892 * 119.99778 * 335.16556 * 19 18 17 22 22 N 1.30878 * 120.00303 * 342.15811 * 21 19 18 23 23 Si 1.86801 * 119.99891 * 162.15893 * 21 19 18 24 24 H 1.48500 * 109.47087 * 94.65321 * 23 21 19 25 25 H 1.48502 * 109.47240 * 214.65752 * 23 21 19 26 26 H 1.48501 * 109.47185 * 334.65825 * 23 21 19 27 27 C 1.40832 * 119.64840 * 359.74089 * 18 17 16 28 28 C 1.36442 * 119.80940 * 0.02562 * 27 18 17 29 29 H 1.08998 * 109.46795 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46668 * 299.99604 * 1 2 3 31 31 H 1.08999 * 109.46766 * 59.99691 * 1 2 3 32 32 H 1.09003 * 109.47108 * 60.00074 * 3 2 1 33 33 H 1.09000 * 109.47186 * 300.00172 * 3 2 1 34 34 H 1.09002 * 109.47006 * 60.00541 * 4 3 2 35 35 H 1.09000 * 109.47145 * 300.00248 * 4 3 2 36 36 H 1.09003 * 109.47216 * 180.02562 * 7 5 4 37 37 H 1.09003 * 109.47371 * 300.00461 * 7 5 4 38 38 H 1.08999 * 109.46947 * 59.99867 * 7 5 4 39 39 H 1.00906 * 110.99527 * 328.95302 * 8 5 4 40 40 H 1.09002 * 109.46904 * 299.99768 * 9 8 5 41 41 H 1.08998 * 109.47215 * 59.99588 * 9 8 5 42 42 H 0.96702 * 113.99868 * 60.00407 * 12 10 9 43 43 H 1.09003 * 109.46659 * 295.00013 * 13 10 9 44 44 H 1.09003 * 109.47079 * 54.99275 * 13 10 9 45 45 H 1.08007 * 119.91100 * 0.02578 * 16 15 14 46 46 H 1.07991 * 120.09638 * 180.25579 * 17 16 15 47 47 H 0.97001 * 120.00335 * 179.97438 * 22 21 19 48 48 H 1.07990 * 120.09424 * 179.97438 * 27 18 17 49 49 H 1.07994 * 119.90514 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 6 4.0865 3.4307 0.0013 6 1 3.5942 3.9177 -0.8405 7 6 5.6014 3.6045 -0.1238 8 7 3.6259 4.0391 1.2566 9 6 3.3834 5.4779 1.0865 10 6 2.9056 6.0748 2.4117 11 1 2.0323 5.5255 2.7637 12 8 3.9508 5.9796 3.3814 13 6 2.5342 7.5445 2.2047 14 8 1.9790 8.0701 3.4118 15 6 1.5950 9.3713 3.3978 16 6 1.7570 10.1289 2.2400 17 6 1.3690 11.4368 2.2159 18 6 0.8132 12.0234 3.3694 19 6 0.4143 13.3780 3.3550 20 1 -0.3451 13.7246 4.0401 21 6 1.0030 14.2709 2.4532 22 7 2.1377 13.9659 1.8767 23 14 0.1696 15.8986 2.0719 24 1 0.7283 16.9583 2.9494 25 1 0.4083 16.2560 0.6505 26 1 -1.2906 15.7754 2.3128 27 6 0.6578 11.2520 4.5373 28 6 1.0466 9.9442 4.5432 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8032 2.2371 0.8900 33 1 1.8032 2.2371 -0.8900 34 1 4.1616 1.4703 -0.8892 35 1 4.1609 1.4704 0.8908 36 1 5.8467 4.6666 -0.1229 37 1 6.0938 3.1175 0.7180 38 1 5.9432 3.1531 -1.0552 39 1 2.8015 3.5720 1.6036 40 1 4.3071 5.9681 0.7788 41 1 2.6199 5.6300 0.3236 42 1 4.7607 6.4464 3.1338 43 1 3.4268 8.1107 1.9385 44 1 1.8007 7.6243 1.4024 45 1 2.1871 9.6786 1.3575 46 1 1.4915 12.0215 1.3163 47 1 2.5457 14.5849 1.2511 48 1 0.2328 11.6946 5.4260 49 1 0.9284 9.3514 5.4381 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819086343.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:46 Heat of formation + Delta-G solvation = -101.426257 kcal Electronic energy + Delta-G solvation = -26154.723769 eV Core-core repulsion = 22399.709025 eV Total energy + Delta-G solvation = -3755.014744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.67361 -39.38742 -38.28518 -37.30943 -35.20907 -33.75104 -31.71651 -31.49234 -30.98582 -29.99246 -29.73114 -26.94370 -25.90710 -24.56843 -23.29982 -22.56876 -22.10717 -21.23133 -19.28007 -18.70226 -17.94690 -17.60186 -17.24869 -16.94201 -16.72247 -16.32883 -15.96587 -15.75369 -15.53421 -15.15284 -15.07541 -14.80736 -14.67465 -14.31359 -14.20441 -14.03993 -13.83799 -13.63203 -13.52761 -13.38724 -13.25154 -13.08351 -12.78600 -12.74671 -12.65943 -12.34673 -12.30582 -12.05465 -11.90613 -11.69599 -11.60467 -11.58263 -11.23028 -11.01701 -10.91713 -10.83751 -9.58088 -9.39052 -8.91722 -8.72463 -8.61189 -6.23345 0.69141 0.92730 1.03191 1.39266 1.48796 1.55086 1.62672 2.22268 2.37070 2.71451 3.19645 3.52732 3.69270 3.71703 3.81854 3.89873 4.00529 4.03011 4.05866 4.28152 4.29044 4.31166 4.32119 4.37345 4.42331 4.47293 4.49113 4.59150 4.65684 4.85340 4.85927 4.86695 4.95645 4.98899 5.00868 5.05895 5.14385 5.16447 5.35942 5.41456 5.51239 5.65170 5.95895 6.02881 6.05488 6.22844 6.37626 6.55239 6.77962 6.86686 6.94367 7.09322 8.35918 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017690 B = 0.001695 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.392862 B =16510.468488 C =16748.898899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.311 6.311 3 C -0.079 4.079 4 C -0.098 4.098 5 C 0.092 3.908 6 H 0.051 0.949 7 C -0.138 4.138 8 N -0.682 5.682 9 C 0.041 3.959 10 C 0.126 3.874 11 H 0.097 0.903 12 O -0.559 6.559 13 C 0.030 3.970 14 O -0.329 6.329 15 C -0.001 4.001 16 C -0.175 4.175 17 C -0.154 4.154 18 C 0.053 3.947 19 C -0.499 4.499 20 H 0.075 0.925 21 C 0.034 3.966 22 N -0.831 5.831 23 Si 0.981 3.019 24 H -0.264 1.264 25 H -0.266 1.266 26 H -0.260 1.260 27 C -0.205 4.205 28 C -0.123 4.123 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.342 0.658 40 H 0.086 0.914 41 H 0.052 0.948 42 H 0.383 0.617 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.119 0.881 46 H 0.107 0.893 47 H 0.287 0.713 48 H 0.109 0.891 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.241 -21.883 -9.149 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.085 6.085 3 C -0.227 4.227 4 C -0.136 4.136 5 C -0.019 4.019 6 H 0.069 0.931 7 C -0.196 4.196 8 N -0.316 5.316 9 C -0.089 4.089 10 C 0.066 3.934 11 H 0.115 0.885 12 O -0.365 6.365 13 C -0.046 4.046 14 O -0.244 6.244 15 C -0.045 4.045 16 C -0.194 4.194 17 C -0.174 4.174 18 C 0.051 3.949 19 C -0.529 4.529 20 H 0.093 0.907 21 C -0.180 4.180 22 N -0.458 5.458 23 Si 0.802 3.198 24 H -0.189 1.189 25 H -0.191 1.191 26 H -0.183 1.183 27 C -0.224 4.224 28 C -0.142 4.142 29 H 0.128 0.872 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.163 0.837 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.231 0.769 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.137 0.863 46 H 0.125 0.875 47 H 0.098 0.902 48 H 0.127 0.873 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.252 -23.095 -8.591 24.855 hybrid contribution -1.470 2.330 -1.073 2.957 sum 1.782 -20.765 -9.664 22.974 Atomic orbital electron populations 1.23428 0.91620 1.07416 1.05691 1.87078 1.10362 1.12876 1.98172 1.23442 1.00732 0.93331 1.05199 1.21457 0.92268 0.95867 1.04051 1.21540 0.96874 0.93132 0.90383 0.93065 1.21774 0.94118 1.01826 1.01927 1.60425 1.39770 1.01950 1.29479 1.22481 1.01477 0.89773 0.95161 1.21773 0.90988 0.91239 0.89422 0.88532 1.86592 1.26058 1.77401 1.46494 1.23487 0.98401 0.95842 0.86910 1.85861 1.78187 1.23484 1.36917 1.18712 1.06431 0.83709 0.95612 1.20803 1.05849 0.95479 0.97242 1.20910 1.04280 0.93646 0.98560 1.17972 0.91810 0.93953 0.91176 1.19711 1.20820 0.93896 1.18492 0.90656 1.26717 0.93869 1.03856 0.93529 1.69885 1.14384 1.38358 1.23196 0.85215 0.79570 0.76563 0.78484 1.18860 1.19060 1.18338 1.20796 1.09438 0.94455 0.97733 1.19905 1.02758 0.95112 0.96429 0.87187 0.89868 0.89653 0.89860 0.89421 0.89709 0.90822 0.92887 0.92554 0.91328 0.83729 0.89557 0.93005 0.76852 0.92217 0.91546 0.86301 0.87508 0.90234 0.87302 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.76 113.37 1.22 0.11 16 2 S -0.31 -4.64 22.38 -56.49 -1.26 -5.90 16 3 C -0.08 -0.93 5.77 71.98 0.42 -0.52 16 4 C -0.10 -1.17 4.81 30.59 0.15 -1.03 16 5 C 0.09 1.16 2.65 44.91 0.12 1.28 16 6 H 0.05 0.61 7.80 -2.39 -0.02 0.59 16 7 C -0.14 -1.77 9.41 71.98 0.68 -1.09 16 8 N -0.68 -10.61 6.26 -491.58 -3.08 -13.68 16 9 C 0.04 0.67 5.12 86.30 0.44 1.11 16 10 C 0.13 2.85 3.43 30.59 0.10 2.96 16 11 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 12 O -0.56 -14.54 13.25 -144.34 -1.91 -16.45 16 13 C 0.03 0.86 4.36 71.98 0.31 1.17 16 14 O -0.33 -12.90 10.09 -85.30 -0.86 -13.76 16 15 C 0.00 -0.03 6.71 22.79 0.15 0.12 16 16 C -0.17 -8.06 8.96 22.11 0.20 -7.86 16 17 C -0.15 -8.10 8.64 22.49 0.19 -7.91 16 18 C 0.05 2.89 5.57 -21.28 -0.12 2.78 16 19 C -0.50 -27.07 9.04 23.40 0.21 -26.85 16 20 H 0.08 3.93 7.91 -2.91 -0.02 3.91 16 21 C 0.03 1.72 5.13 85.24 0.44 2.16 16 22 N -0.83 -43.38 10.97 21.82 0.24 -43.14 16 23 Si 0.98 38.11 29.59 68.60 2.03 40.14 16 24 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 25 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 26 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 27 C -0.20 -10.26 9.74 22.49 0.22 -10.04 16 28 C -0.12 -5.75 9.92 22.11 0.22 -5.53 16 29 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.97 6.42 -2.39 -0.02 0.95 16 33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 0.72 7.45 -2.39 -0.02 0.70 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.34 5.16 6.47 -89.69 -0.58 4.58 16 40 H 0.09 1.34 7.44 -2.39 -0.02 1.32 16 41 H 0.05 0.75 8.06 -2.39 -0.02 0.73 16 42 H 0.38 7.71 9.05 -74.06 -0.67 7.04 16 43 H 0.06 1.66 7.63 -2.39 -0.02 1.64 16 44 H 0.07 1.77 7.66 -2.39 -0.02 1.76 16 45 H 0.12 4.69 6.27 -2.91 -0.02 4.67 16 46 H 0.11 5.80 6.18 -2.92 -0.02 5.78 16 47 H 0.29 13.49 8.30 -92.71 -0.77 12.72 16 48 H 0.11 5.08 8.06 -2.92 -0.02 5.06 16 49 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -64.01 409.92 -0.19 -64.21 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: -0.30 Total: 37.75 kcal Atomic # 6 Polarization: -54.11 SS G_CDS: 4.95 Total: -49.16 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -2.84 Total: -56.83 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -2.77 Total: -30.21 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -1.26 Total: -5.90 kcal Total: -64.01 -0.19 -64.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819086343.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.219 kcal (2) G-P(sol) polarization free energy of solvation -64.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds