Wall clock time and date at job start Tue Mar 31 2020 22:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.81394 * 102.99838 * 2 1 4 4 C 1.52998 * 109.47355 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47577 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47180 * 54.99696 * 5 4 3 7 7 C 1.52998 * 109.47386 * 174.99821 * 5 4 3 8 8 N 1.46903 * 109.47253 * 295.00032 * 5 4 3 9 9 C 1.46899 * 111.00096 * 154.99819 * 8 5 4 10 10 C 1.53002 * 109.46977 * 180.02562 * 9 8 5 11 11 H 1.09003 * 109.47137 * 59.99972 * 10 9 8 12 12 O 1.42894 * 109.46976 * 300.00053 * 10 9 8 13 13 C 1.52998 * 109.47151 * 179.97438 * 10 9 8 14 14 O 1.42897 * 109.46939 * 184.99933 * 13 10 9 15 15 C 1.35679 * 116.99986 * 180.02562 * 14 13 10 16 16 C 1.39310 * 119.82012 * 179.97438 * 15 14 13 17 17 C 1.36434 * 120.18388 * 179.72146 * 16 15 14 18 18 C 1.40833 * 119.81229 * 0.28410 * 17 16 15 19 19 C 1.41217 * 120.17634 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00063 * 204.54326 * 19 18 17 21 21 C 1.39888 * 120.00226 * 24.54833 * 19 18 17 22 22 N 1.30881 * 120.00110 * 17.92863 * 21 19 18 23 23 Si 1.86803 * 119.99833 * 197.93362 * 21 19 18 24 24 H 1.48507 * 109.47341 * 89.99840 * 23 21 19 25 25 H 1.48504 * 109.47207 * 209.99555 * 23 21 19 26 26 H 1.48495 * 109.47455 * 329.99651 * 23 21 19 27 27 C 1.40829 * 119.64308 * 359.97438 * 18 17 16 28 28 C 1.36438 * 119.80864 * 0.02562 * 27 18 17 29 29 H 1.08998 * 109.47131 * 299.99510 * 1 2 3 30 30 H 1.08999 * 109.47269 * 60.00210 * 1 2 3 31 31 H 1.08998 * 109.46785 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47311 * 59.99790 * 3 2 1 33 33 H 1.08998 * 109.47293 * 300.00419 * 3 2 1 34 34 H 1.08993 * 109.47144 * 59.99628 * 4 3 2 35 35 H 1.08998 * 109.46667 * 300.00220 * 4 3 2 36 36 H 1.08993 * 109.47085 * 59.99805 * 7 5 4 37 37 H 1.09003 * 109.47005 * 180.02562 * 7 5 4 38 38 H 1.08995 * 109.47117 * 299.99876 * 7 5 4 39 39 H 1.00895 * 110.99625 * 278.95430 * 8 5 4 40 40 H 1.08989 * 109.47204 * 59.99997 * 9 8 5 41 41 H 1.08999 * 109.47236 * 299.99785 * 9 8 5 42 42 H 0.96695 * 114.00535 * 299.99800 * 12 10 9 43 43 H 1.09005 * 109.46881 * 65.00011 * 13 10 9 44 44 H 1.08998 * 109.47164 * 305.00000 * 13 10 9 45 45 H 1.08000 * 119.90685 * 0.02562 * 16 15 14 46 46 H 1.07999 * 120.09173 * 180.29736 * 17 16 15 47 47 H 0.97005 * 119.99879 * 180.02562 * 22 21 19 48 48 H 1.07999 * 120.09227 * 180.02562 * 27 18 17 49 49 H 1.08003 * 119.90520 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0865 3.4307 0.0000 6 1 3.5942 3.9169 0.8423 7 6 5.6014 3.6044 0.1251 8 7 3.6257 4.0403 -1.2547 9 6 3.3833 5.4789 -1.0832 10 6 2.9052 6.0770 -2.4078 11 1 1.9814 5.5870 -2.7154 12 8 3.9057 5.8785 -3.4086 13 6 2.6521 7.5753 -2.2290 14 8 2.0957 8.1111 -3.4313 15 6 1.8107 9.4376 -3.4403 16 6 1.2669 10.0215 -4.5823 17 6 0.9721 11.3535 -4.5976 18 6 1.2246 12.1397 -3.4567 19 6 0.9220 13.5190 -3.4639 20 1 1.4456 14.1903 -2.7993 21 6 -0.0562 14.0160 -4.3317 22 7 -0.9257 13.2013 -4.8732 23 14 -0.1212 15.8425 -4.7179 24 1 0.7235 16.1278 -5.9056 25 1 -1.5240 16.2389 -5.0016 26 1 0.3851 16.6130 -3.5538 27 6 1.7795 11.5426 -2.3083 28 6 2.0685 10.2092 -2.3094 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8031 2.2371 0.8900 33 1 1.8031 2.2371 -0.8899 34 1 4.1609 1.4705 -0.8908 35 1 4.1616 1.4703 0.8891 36 1 6.0936 3.1182 -0.7171 37 1 5.8465 4.6665 0.1260 38 1 5.9433 3.1522 1.0561 39 1 4.2826 3.8707 -2.0015 40 1 4.3068 5.9688 -0.7752 41 1 2.6198 5.6303 -0.3201 42 1 4.7565 6.2885 -3.2010 43 1 3.5932 8.0789 -2.0082 44 1 1.9550 7.7303 -1.4055 45 1 1.0736 9.4171 -5.4562 46 1 0.5461 11.8037 -5.4820 47 1 -1.6037 13.5459 -5.4753 48 1 1.9758 12.1386 -1.4292 49 1 2.4945 9.7498 -1.4297 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819086346.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:50 Heat of formation + Delta-G solvation = -104.577706 kcal Electronic energy + Delta-G solvation = -26071.371014 eV Core-core repulsion = 22316.219613 eV Total energy + Delta-G solvation = -3755.151401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.67673 -39.39938 -38.23457 -37.30344 -35.18646 -33.75283 -31.98739 -31.31160 -30.88473 -29.90345 -29.62718 -26.89905 -25.83833 -24.55988 -23.17705 -22.45062 -22.27570 -21.50692 -19.26091 -18.76078 -17.69474 -17.45562 -17.10957 -17.05597 -16.66056 -16.28199 -15.91635 -15.74818 -15.48807 -15.13235 -14.99042 -14.83489 -14.53103 -14.33277 -14.09252 -13.98623 -13.95601 -13.81361 -13.53211 -13.52009 -13.07192 -13.01490 -12.81174 -12.74838 -12.59604 -12.38767 -12.20317 -11.97896 -11.88810 -11.75256 -11.68262 -11.58906 -11.21772 -10.98817 -10.88703 -10.86630 -9.57005 -9.33745 -8.93262 -8.66693 -8.59986 -6.23407 0.80382 0.94275 1.01880 1.39640 1.52539 1.52769 1.71742 2.22390 2.39584 2.72042 3.25791 3.48946 3.69528 3.79508 3.96581 4.02871 4.03369 4.11490 4.15723 4.28343 4.31820 4.33708 4.35587 4.36090 4.41427 4.46483 4.53870 4.70069 4.71933 4.83277 4.86621 4.87817 4.98187 5.04268 5.07747 5.11701 5.21180 5.22085 5.27952 5.29122 5.58207 5.63772 5.87671 6.05136 6.06291 6.25769 6.45642 6.56147 6.78330 6.83035 6.94552 7.09873 8.36533 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020979 B = 0.001633 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.371185 B =17143.212340 C =17803.326427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.328 6.328 3 C -0.060 4.060 4 C -0.084 4.084 5 C 0.092 3.908 6 H 0.083 0.917 7 C -0.178 4.178 8 N -0.685 5.685 9 C 0.044 3.956 10 C 0.124 3.876 11 H 0.095 0.905 12 O -0.565 6.565 13 C 0.029 3.971 14 O -0.332 6.332 15 C 0.001 3.999 16 C -0.135 4.135 17 C -0.152 4.152 18 C 0.053 3.947 19 C -0.499 4.499 20 H 0.077 0.923 21 C 0.032 3.968 22 N -0.832 5.832 23 Si 0.983 3.017 24 H -0.263 1.263 25 H -0.270 1.270 26 H -0.258 1.258 27 C -0.207 4.207 28 C -0.165 4.165 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.350 0.650 40 H 0.051 0.949 41 H 0.089 0.911 42 H 0.384 0.616 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.287 0.713 48 H 0.106 0.894 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.318 -20.178 11.212 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.102 6.102 3 C -0.208 4.208 4 C -0.123 4.123 5 C -0.020 4.020 6 H 0.101 0.899 7 C -0.237 4.237 8 N -0.317 5.317 9 C -0.086 4.086 10 C 0.064 3.936 11 H 0.113 0.887 12 O -0.372 6.372 13 C -0.047 4.047 14 O -0.247 6.247 15 C -0.043 4.043 16 C -0.154 4.154 17 C -0.172 4.172 18 C 0.051 3.949 19 C -0.529 4.529 20 H 0.095 0.905 21 C -0.181 4.181 22 N -0.459 5.459 23 Si 0.804 3.196 24 H -0.188 1.188 25 H -0.194 1.194 26 H -0.181 1.181 27 C -0.226 4.226 28 C -0.183 4.183 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.169 0.831 40 H 0.069 0.931 41 H 0.107 0.893 42 H 0.233 0.767 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.123 0.877 46 H 0.127 0.873 47 H 0.098 0.902 48 H 0.124 0.876 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.585 -21.716 10.737 25.385 hybrid contribution 0.100 2.557 0.143 2.563 sum 7.685 -19.160 10.880 23.335 Atomic orbital electron populations 1.23375 0.91706 1.07189 1.05502 1.86942 1.10407 1.14642 1.98209 1.23289 1.00810 0.91380 1.05273 1.21275 0.92393 0.95739 1.02870 1.21558 0.94179 0.94058 0.92191 0.89885 1.22437 0.96057 1.02120 1.03110 1.60421 1.52607 1.11249 1.07424 1.22394 1.01231 0.88907 0.96060 1.21825 0.92408 0.90635 0.88736 0.88685 1.86621 1.24722 1.78685 1.47165 1.23507 0.98693 0.95516 0.86971 1.85885 1.79742 1.20906 1.38216 1.18685 1.06876 0.82737 0.95988 1.20013 1.03583 0.95047 0.96789 1.20898 1.04531 0.92818 0.98947 1.17970 0.91601 0.94234 0.91113 1.19716 1.19166 0.93518 1.20450 0.90522 1.26750 0.92966 1.04973 0.93446 1.69895 1.12226 1.39388 1.24355 0.85194 0.78401 0.76414 0.79620 1.18814 1.19426 1.18130 1.20806 1.09498 0.94624 0.97714 1.20700 1.05515 0.94727 0.97401 0.89715 0.90236 0.87300 0.90113 0.89676 0.91653 0.90409 0.92165 0.92399 0.91149 0.83077 0.93066 0.89303 0.76749 0.91565 0.91469 0.87655 0.87307 0.90224 0.87551 0.85220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.76 113.37 1.22 -0.11 16 2 S -0.33 -5.59 22.38 -56.49 -1.26 -6.85 16 3 C -0.06 -0.87 5.83 71.98 0.42 -0.45 16 4 C -0.08 -1.04 4.90 30.59 0.15 -0.89 16 5 C 0.09 1.02 2.59 44.91 0.12 1.13 16 6 H 0.08 0.89 7.80 -2.38 -0.02 0.88 16 7 C -0.18 -1.67 9.16 71.98 0.66 -1.01 16 8 N -0.68 -9.58 5.70 -491.58 -2.80 -12.38 16 9 C 0.04 0.64 5.19 86.30 0.45 1.08 16 10 C 0.12 2.67 3.52 30.59 0.11 2.78 16 11 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 12 O -0.57 -12.92 12.64 -144.36 -1.82 -14.74 16 13 C 0.03 0.79 4.37 71.98 0.31 1.11 16 14 O -0.33 -12.99 10.09 -85.35 -0.86 -13.85 16 15 C 0.00 0.05 6.71 22.79 0.15 0.20 16 16 C -0.14 -6.72 9.92 22.11 0.22 -6.50 16 17 C -0.15 -8.25 8.64 22.48 0.19 -8.06 16 18 C 0.05 2.89 5.57 -21.28 -0.12 2.77 16 19 C -0.50 -27.00 9.04 23.40 0.21 -26.79 16 20 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 21 C 0.03 1.65 5.13 85.23 0.44 2.09 16 22 N -0.83 -44.17 10.96 21.82 0.24 -43.93 16 23 Si 0.98 38.43 29.60 68.60 2.03 40.46 16 24 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 25 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 26 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 27 C -0.21 -10.03 9.74 22.48 0.22 -9.82 16 28 C -0.16 -7.10 8.96 22.11 0.20 -6.90 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.45 7.75 -2.39 -0.02 1.43 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 37 H 0.06 0.55 7.45 -2.39 -0.02 0.53 16 38 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.35 5.14 7.86 -89.70 -0.71 4.43 16 40 H 0.05 0.61 7.44 -2.39 -0.02 0.60 16 41 H 0.09 1.23 8.06 -2.39 -0.02 1.21 16 42 H 0.38 6.00 9.05 -74.06 -0.67 5.33 16 43 H 0.07 1.61 7.63 -2.38 -0.02 1.59 16 44 H 0.07 1.72 7.66 -2.39 -0.02 1.70 16 45 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 46 H 0.11 6.13 6.16 -2.91 -0.02 6.11 16 47 H 0.29 13.80 8.30 -92.70 -0.77 13.03 16 48 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 49 H 0.13 4.51 6.27 -2.91 -0.02 4.49 16 Total: -1.00 -64.27 411.43 0.03 -64.23 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: -0.43 Total: 36.41 kcal Atomic # 6 Polarization: -54.30 SS G_CDS: 4.95 Total: -49.35 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -2.56 Total: -56.31 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -2.69 Total: -28.59 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Atomic # 16 Polarization: -5.59 SS G_CDS: -1.26 Total: -6.85 kcal Total: -64.27 0.03 -64.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819086346.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.344 kcal (2) G-P(sol) polarization free energy of solvation -64.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds