Wall clock time and date at job start Tue Mar 31 2020 22:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81393 * 103.00118 * 2 1 4 4 C 1.53003 * 109.47412 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47595 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47134 * 54.99468 * 5 4 3 7 7 C 1.52993 * 109.47357 * 174.99911 * 5 4 3 8 8 N 1.46905 * 109.47016 * 294.99907 * 5 4 3 9 9 C 1.46902 * 110.99844 * 154.99727 * 8 5 4 10 10 C 1.53004 * 109.46996 * 179.97438 * 9 8 5 11 11 H 1.08993 * 109.47094 * 305.00308 * 10 9 8 12 12 O 1.42904 * 109.46879 * 65.00393 * 10 9 8 13 13 C 1.53002 * 109.46892 * 184.99880 * 10 9 8 14 14 O 1.42903 * 109.46733 * 175.00253 * 13 10 9 15 15 C 1.35674 * 116.99806 * 180.02562 * 14 13 10 16 16 C 1.39312 * 119.81568 * 359.71983 * 15 14 13 17 17 C 1.36439 * 120.18299 * 179.76138 * 16 15 14 18 18 C 1.40842 * 119.80752 * 0.51827 * 17 16 15 19 19 C 1.41213 * 120.17311 * 179.72118 * 18 17 16 20 20 H 1.07997 * 120.00607 * 24.56399 * 19 18 17 21 21 C 1.39902 * 119.99613 * 204.57182 * 19 18 17 22 22 N 1.30876 * 119.99815 * 17.92554 * 21 19 18 23 23 Si 1.86800 * 119.99988 * 197.93288 * 21 19 18 24 24 H 1.48503 * 109.46972 * 59.99237 * 23 21 19 25 25 H 1.48494 * 109.47088 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47003 * 299.99745 * 23 21 19 27 27 C 1.40825 * 119.64343 * 359.73927 * 18 17 16 28 28 C 1.36438 * 119.81260 * 359.97438 * 27 18 17 29 29 H 1.09009 * 109.47197 * 300.00099 * 1 2 3 30 30 H 1.09000 * 109.47461 * 59.99703 * 1 2 3 31 31 H 1.09004 * 109.47421 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47500 * 60.00150 * 3 2 1 33 33 H 1.09004 * 109.47601 * 300.00135 * 3 2 1 34 34 H 1.09002 * 109.46839 * 59.99766 * 4 3 2 35 35 H 1.09004 * 109.46643 * 300.00471 * 4 3 2 36 36 H 1.09005 * 109.47313 * 180.02562 * 7 5 4 37 37 H 1.08997 * 109.47239 * 300.00154 * 7 5 4 38 38 H 1.09004 * 109.47237 * 60.00445 * 7 5 4 39 39 H 1.00904 * 111.00014 * 31.04594 * 8 5 4 40 40 H 1.08998 * 109.47518 * 300.00078 * 9 8 5 41 41 H 1.09000 * 109.46844 * 60.00447 * 9 8 5 42 42 H 0.96703 * 114.00305 * 59.99524 * 12 10 9 43 43 H 1.08998 * 109.47033 * 295.00172 * 13 10 9 44 44 H 1.09001 * 109.47145 * 55.00404 * 13 10 9 45 45 H 1.07993 * 119.91098 * 0.02562 * 16 15 14 46 46 H 1.07995 * 120.09476 * 180.25321 * 17 16 15 47 47 H 0.97002 * 119.99721 * 179.97438 * 22 21 19 48 48 H 1.08004 * 120.09209 * 179.97438 * 27 18 17 49 49 H 1.08001 * 119.90968 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.0866 3.4306 -0.0013 6 1 3.5942 3.9176 0.8405 7 6 5.6014 3.6043 0.1238 8 7 3.6259 4.0390 -1.2566 9 6 3.3835 5.4778 -1.0864 10 6 2.9068 6.0750 -2.4120 11 1 3.6299 5.8457 -3.1946 12 8 1.6377 5.5161 -2.7572 13 6 2.7738 7.5926 -2.2691 14 8 2.4417 8.1630 -3.5365 15 6 2.2869 9.5100 -3.5842 16 6 2.4472 10.2671 -2.4258 17 6 2.2981 11.6227 -2.4661 18 6 1.9705 12.2551 -3.6811 19 6 1.8085 13.6571 -3.7305 20 1 2.2969 14.2833 -2.9985 21 6 1.0153 14.2349 -4.7275 22 7 0.1549 13.5011 -5.3864 23 14 1.1843 16.0537 -5.1186 24 1 2.5746 16.3388 -5.5558 25 1 0.2398 16.4161 -6.2055 26 1 0.8734 16.8517 -3.9054 27 6 1.8049 11.4818 -4.8464 28 6 1.9633 10.1279 -4.7901 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8032 2.2371 0.8899 33 1 1.8031 2.2372 -0.8900 34 1 4.1608 1.4704 -0.8909 35 1 4.1616 1.4701 0.8891 36 1 5.8466 4.6664 0.1238 37 1 5.9432 3.1529 1.0552 38 1 6.0938 3.1175 -0.7181 39 1 2.8015 3.5720 -1.6036 40 1 2.6200 5.6300 -0.3235 41 1 4.3072 5.9680 -0.7788 42 1 0.9442 5.6815 -2.1039 43 1 1.9876 7.8223 -1.5500 44 1 3.7187 8.0088 -1.9197 45 1 2.6944 9.7801 -1.4941 46 1 2.4267 12.2086 -1.5681 47 1 -0.3954 13.9018 -6.0775 48 1 1.5533 11.9593 -5.7819 49 1 1.8363 9.5332 -5.6827 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819086347.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:54 Heat of formation + Delta-G solvation = -84.850979 kcal Electronic energy + Delta-G solvation = -26102.207071 eV Core-core repulsion = 22347.911085 eV Total energy + Delta-G solvation = -3754.295986 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.24553 -38.38138 -37.06109 -36.00248 -33.33286 -33.02069 -30.74608 -30.00319 -29.36309 -29.24114 -28.80319 -25.52169 -24.57841 -23.85037 -21.98090 -20.92504 -20.64457 -20.45309 -17.39444 -17.34186 -16.86777 -16.57372 -16.37480 -16.16928 -15.59593 -15.18675 -14.72141 -14.62607 -14.33139 -14.18651 -13.95131 -13.83109 -13.67652 -13.51048 -13.08838 -12.90343 -12.80483 -12.56473 -12.26108 -12.15276 -12.11717 -11.81255 -11.73261 -11.51817 -11.37943 -11.13540 -11.03848 -10.99651 -10.82501 -10.60405 -10.43970 -10.05534 -9.98244 -9.84081 -9.34715 -9.02886 -8.78138 -8.11769 -7.65725 -7.04520 -6.73380 -4.26718 1.21435 2.13657 2.77936 2.93730 3.07208 3.09500 3.21410 3.47998 3.94110 4.14332 4.26226 4.36662 4.38653 4.54911 4.60721 4.69553 4.72045 4.87226 4.91664 4.96697 5.00946 5.11201 5.18580 5.27260 5.31339 5.36109 5.40296 5.53388 5.57211 5.60042 5.66113 5.71232 5.96027 6.03798 6.04514 6.21742 6.66665 6.72234 6.96362 7.07113 7.09879 7.17317 7.44599 7.53864 7.57436 7.77684 7.99167 8.19259 8.43924 8.63996 8.88634 8.97497 10.21061 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025536 B = 0.001604 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.234761 B =17450.819044 C =18075.632763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.263 6.263 3 C -0.090 4.090 4 C -0.106 4.106 5 C 0.088 3.912 6 H 0.045 0.955 7 C -0.141 4.141 8 N -0.680 5.680 9 C 0.032 3.968 10 C 0.111 3.889 11 H 0.116 0.884 12 O -0.551 6.551 13 C 0.040 3.960 14 O -0.317 6.317 15 C -0.010 4.010 16 C -0.168 4.168 17 C -0.199 4.199 18 C 0.088 3.912 19 C -0.464 4.464 20 H 0.076 0.924 21 C 0.075 3.925 22 N -0.798 5.798 23 Si 0.908 3.092 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.266 1.266 27 C -0.133 4.133 28 C -0.119 4.119 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.347 0.653 40 H 0.034 0.966 41 H 0.085 0.915 42 H 0.368 0.632 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.281 0.719 48 H 0.126 0.874 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.278 -21.116 11.254 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.037 6.037 3 C -0.238 4.238 4 C -0.145 4.145 5 C -0.023 4.023 6 H 0.063 0.937 7 C -0.199 4.199 8 N -0.315 5.315 9 C -0.098 4.098 10 C 0.052 3.948 11 H 0.133 0.867 12 O -0.355 6.355 13 C -0.038 4.038 14 O -0.233 6.233 15 C -0.053 4.053 16 C -0.187 4.187 17 C -0.219 4.219 18 C 0.086 3.914 19 C -0.494 4.494 20 H 0.094 0.906 21 C -0.142 4.142 22 N -0.424 5.424 23 Si 0.732 3.268 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.191 1.191 27 C -0.153 4.153 28 C -0.138 4.138 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.168 0.832 40 H 0.052 0.948 41 H 0.103 0.897 42 H 0.215 0.785 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.092 0.908 48 H 0.143 0.857 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.678 -22.227 10.142 24.876 hybrid contribution -2.043 2.255 1.185 3.265 sum 2.635 -19.972 11.327 23.111 Atomic orbital electron populations 1.23394 0.93986 1.06612 1.05089 1.86915 1.07607 1.11149 1.98071 1.23487 1.00813 0.94622 1.04884 1.21547 0.92268 0.96302 1.04353 1.21535 0.96838 0.93035 0.90923 0.93711 1.21791 0.94231 1.02162 1.01691 1.60457 1.39982 1.02453 1.28563 1.22592 1.01056 0.89612 0.96536 1.21981 0.86313 0.89600 0.96920 0.86661 1.86653 1.19724 1.78524 1.50606 1.23079 1.00088 0.93429 0.87182 1.85890 1.87231 1.20213 1.29917 1.18619 1.10964 0.80471 0.95216 1.20387 1.07618 0.95286 0.95427 1.20549 1.11258 0.92899 0.97149 1.17597 0.89988 0.93559 0.90305 1.19429 1.26391 0.92007 1.11590 0.90594 1.25882 0.93169 1.00452 0.94690 1.69825 1.15521 1.38196 1.18901 0.86379 0.79213 0.82369 0.78801 1.18869 1.20376 1.19114 1.20982 1.03604 0.91415 0.99263 1.19847 1.04615 0.94864 0.94436 0.90529 0.90243 0.88027 0.90235 0.89807 0.89748 0.90169 0.92435 0.92492 0.91656 0.83165 0.94760 0.89660 0.78521 0.93138 0.92343 0.89010 0.88794 0.90841 0.85650 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.76 101.05 1.09 0.41 16 2 S -0.26 -2.07 22.38 -107.50 -2.41 -4.47 16 3 C -0.09 -0.59 5.77 37.16 0.21 -0.38 16 4 C -0.11 -0.70 4.81 -26.73 -0.13 -0.83 16 5 C 0.09 0.63 2.65 -67.72 -0.18 0.45 16 6 H 0.04 0.32 7.80 -51.93 -0.40 -0.09 16 7 C -0.14 -1.00 9.41 37.15 0.35 -0.65 16 8 N -0.68 -5.89 6.31 -106.73 -0.67 -6.56 16 9 C 0.03 0.29 5.16 -3.82 -0.02 0.27 16 10 C 0.11 1.35 3.49 -26.73 -0.09 1.26 16 11 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16 12 O -0.55 -6.97 12.82 -40.08 -0.51 -7.49 16 13 C 0.04 0.59 4.37 37.16 0.16 0.75 16 14 O -0.32 -6.48 10.09 -23.58 -0.24 -6.72 16 15 C -0.01 -0.22 6.71 -38.78 -0.26 -0.48 16 16 C -0.17 -3.78 8.96 -39.83 -0.36 -4.14 16 17 C -0.20 -4.87 9.74 -39.25 -0.38 -5.26 16 18 C 0.09 2.35 5.57 -106.80 -0.60 1.75 16 19 C -0.46 -12.32 9.04 -37.83 -0.34 -12.66 16 20 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 21 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 22 N -0.80 -20.70 10.96 55.55 0.61 -20.09 16 23 Si 0.91 18.66 29.60 -169.99 -5.03 13.63 16 24 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 26 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 27 C -0.13 -3.50 8.64 -39.25 -0.34 -3.84 16 28 C -0.12 -2.91 9.92 -39.83 -0.40 -3.30 16 29 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.57 6.42 -51.92 -0.33 0.23 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.43 7.45 -51.93 -0.39 0.05 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.35 3.02 6.03 -39.29 -0.24 2.79 16 40 H 0.03 0.28 8.06 -51.93 -0.42 -0.14 16 41 H 0.09 0.77 7.44 -51.93 -0.39 0.38 16 42 H 0.37 3.43 9.05 45.56 0.41 3.85 16 43 H 0.05 0.72 7.64 -51.93 -0.40 0.32 16 44 H 0.06 0.84 7.66 -51.93 -0.40 0.44 16 45 H 0.09 1.76 6.27 -52.49 -0.33 1.44 16 46 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 47 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 48 H 0.13 3.36 6.16 -52.48 -0.32 3.04 16 49 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 409.18 15.07 6.17 6.17 Total: -1.00 -29.55 409.18 -10.86 -40.41 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -7.40 Total: 9.97 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: -1.37 Total: -24.85 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: -0.06 Total: -26.65 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.75 Total: -14.20 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Atomic # 16 Polarization: -2.07 SS G_CDS: -2.41 Total: -4.47 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -29.55 -10.86 -40.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819086347.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.442 kcal (2) G-P(sol) polarization free energy of solvation -29.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds