Wall clock time and date at job start Tue Mar 31 2020 22:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81393 * 103.00118 * 2 1 4 4 C 1.53003 * 109.47412 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47595 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47134 * 54.99468 * 5 4 3 7 7 C 1.52993 * 109.47357 * 174.99911 * 5 4 3 8 8 N 1.46905 * 109.47016 * 294.99907 * 5 4 3 9 9 C 1.46902 * 110.99844 * 154.99727 * 8 5 4 10 10 C 1.53004 * 109.46996 * 179.97438 * 9 8 5 11 11 H 1.08993 * 109.47094 * 305.00308 * 10 9 8 12 12 O 1.42904 * 109.46879 * 65.00393 * 10 9 8 13 13 C 1.53002 * 109.46892 * 184.99880 * 10 9 8 14 14 O 1.42903 * 109.46733 * 175.00253 * 13 10 9 15 15 C 1.35674 * 116.99806 * 180.02562 * 14 13 10 16 16 C 1.39312 * 119.81568 * 359.71983 * 15 14 13 17 17 C 1.36439 * 120.18299 * 179.76138 * 16 15 14 18 18 C 1.40842 * 119.80752 * 0.51827 * 17 16 15 19 19 C 1.41213 * 120.17311 * 179.72118 * 18 17 16 20 20 H 1.07997 * 120.00607 * 24.56399 * 19 18 17 21 21 C 1.39902 * 119.99613 * 204.57182 * 19 18 17 22 22 N 1.30876 * 119.99815 * 17.92554 * 21 19 18 23 23 Si 1.86800 * 119.99988 * 197.93288 * 21 19 18 24 24 H 1.48503 * 109.46972 * 59.99237 * 23 21 19 25 25 H 1.48494 * 109.47088 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47003 * 299.99745 * 23 21 19 27 27 C 1.40825 * 119.64343 * 359.73927 * 18 17 16 28 28 C 1.36438 * 119.81260 * 359.97438 * 27 18 17 29 29 H 1.09009 * 109.47197 * 300.00099 * 1 2 3 30 30 H 1.09000 * 109.47461 * 59.99703 * 1 2 3 31 31 H 1.09004 * 109.47421 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47500 * 60.00150 * 3 2 1 33 33 H 1.09004 * 109.47601 * 300.00135 * 3 2 1 34 34 H 1.09002 * 109.46839 * 59.99766 * 4 3 2 35 35 H 1.09004 * 109.46643 * 300.00471 * 4 3 2 36 36 H 1.09005 * 109.47313 * 180.02562 * 7 5 4 37 37 H 1.08997 * 109.47239 * 300.00154 * 7 5 4 38 38 H 1.09004 * 109.47237 * 60.00445 * 7 5 4 39 39 H 1.00904 * 111.00014 * 31.04594 * 8 5 4 40 40 H 1.08998 * 109.47518 * 300.00078 * 9 8 5 41 41 H 1.09000 * 109.46844 * 60.00447 * 9 8 5 42 42 H 0.96703 * 114.00305 * 59.99524 * 12 10 9 43 43 H 1.08998 * 109.47033 * 295.00172 * 13 10 9 44 44 H 1.09001 * 109.47145 * 55.00404 * 13 10 9 45 45 H 1.07993 * 119.91098 * 0.02562 * 16 15 14 46 46 H 1.07995 * 120.09476 * 180.25321 * 17 16 15 47 47 H 0.97002 * 119.99721 * 179.97438 * 22 21 19 48 48 H 1.08004 * 120.09209 * 179.97438 * 27 18 17 49 49 H 1.08001 * 119.90968 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.0866 3.4306 -0.0013 6 1 3.5942 3.9176 0.8405 7 6 5.6014 3.6043 0.1238 8 7 3.6259 4.0390 -1.2566 9 6 3.3835 5.4778 -1.0864 10 6 2.9068 6.0750 -2.4120 11 1 3.6299 5.8457 -3.1946 12 8 1.6377 5.5161 -2.7572 13 6 2.7738 7.5926 -2.2691 14 8 2.4417 8.1630 -3.5365 15 6 2.2869 9.5100 -3.5842 16 6 2.4472 10.2671 -2.4258 17 6 2.2981 11.6227 -2.4661 18 6 1.9705 12.2551 -3.6811 19 6 1.8085 13.6571 -3.7305 20 1 2.2969 14.2833 -2.9985 21 6 1.0153 14.2349 -4.7275 22 7 0.1549 13.5011 -5.3864 23 14 1.1843 16.0537 -5.1186 24 1 2.5746 16.3388 -5.5558 25 1 0.2398 16.4161 -6.2055 26 1 0.8734 16.8517 -3.9054 27 6 1.8049 11.4818 -4.8464 28 6 1.9633 10.1279 -4.7901 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8032 2.2371 0.8899 33 1 1.8031 2.2372 -0.8900 34 1 4.1608 1.4704 -0.8909 35 1 4.1616 1.4701 0.8891 36 1 5.8466 4.6664 0.1238 37 1 5.9432 3.1529 1.0552 38 1 6.0938 3.1175 -0.7181 39 1 2.8015 3.5720 -1.6036 40 1 2.6200 5.6300 -0.3235 41 1 4.3072 5.9680 -0.7788 42 1 0.9442 5.6815 -2.1039 43 1 1.9876 7.8223 -1.5500 44 1 3.7187 8.0088 -1.9197 45 1 2.6944 9.7801 -1.4941 46 1 2.4267 12.2086 -1.5681 47 1 -0.3954 13.9018 -6.0775 48 1 1.5533 11.9593 -5.7819 49 1 1.8363 9.5332 -5.6827 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819086347.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:53 Heat of formation + Delta-G solvation = -102.918104 kcal Electronic energy + Delta-G solvation = -26102.990520 eV Core-core repulsion = 22347.911085 eV Total energy + Delta-G solvation = -3755.079435 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.68140 -39.43838 -38.27866 -37.35240 -35.18648 -33.73674 -31.94181 -31.27234 -30.91192 -30.09292 -29.73446 -26.93872 -25.92435 -24.57680 -23.19016 -22.45105 -22.25918 -21.24514 -19.25820 -18.76919 -17.74580 -17.63629 -17.26419 -17.05408 -16.84024 -16.40841 -15.94659 -15.73795 -15.42855 -15.18137 -15.07902 -14.82216 -14.58370 -14.36293 -14.09216 -14.04519 -13.93455 -13.63622 -13.56091 -13.41487 -13.22711 -13.02898 -12.79076 -12.69906 -12.61746 -12.38695 -12.31674 -12.07091 -11.89069 -11.71592 -11.60569 -11.56918 -11.22696 -11.03051 -10.93098 -10.86905 -9.56872 -9.42065 -8.93066 -8.71597 -8.59876 -6.23096 0.70250 0.95002 1.02149 1.39655 1.50613 1.54728 1.63745 2.22507 2.38500 2.72472 3.22107 3.44849 3.69719 3.72469 3.84968 3.94406 4.00573 4.02384 4.06329 4.28310 4.29998 4.31897 4.32537 4.35278 4.41969 4.45848 4.49405 4.61575 4.69160 4.85696 4.86156 4.86755 4.97957 4.98796 5.04807 5.07862 5.17751 5.21316 5.27920 5.41840 5.58262 5.63900 5.87837 6.04407 6.05336 6.25870 6.41278 6.56100 6.75521 6.81767 6.94602 7.09928 8.36558 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025536 B = 0.001604 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.234761 B =17450.819044 C =18075.632763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.312 6.312 3 C -0.077 4.077 4 C -0.099 4.099 5 C 0.092 3.908 6 H 0.054 0.946 7 C -0.140 4.140 8 N -0.689 5.689 9 C 0.043 3.957 10 C 0.122 3.878 11 H 0.098 0.902 12 O -0.567 6.567 13 C 0.030 3.970 14 O -0.331 6.331 15 C 0.000 4.000 16 C -0.165 4.165 17 C -0.207 4.207 18 C 0.053 3.947 19 C -0.500 4.500 20 H 0.077 0.923 21 C 0.033 3.967 22 N -0.831 5.831 23 Si 0.982 3.018 24 H -0.261 1.261 25 H -0.269 1.269 26 H -0.259 1.259 27 C -0.153 4.153 28 C -0.135 4.135 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.347 0.653 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.383 0.617 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.130 0.870 46 H 0.106 0.894 47 H 0.287 0.713 48 H 0.109 0.891 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.344 -21.466 12.950 25.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.086 6.086 3 C -0.226 4.226 4 C -0.137 4.137 5 C -0.019 4.019 6 H 0.072 0.928 7 C -0.198 4.198 8 N -0.324 5.324 9 C -0.087 4.087 10 C 0.063 3.937 11 H 0.116 0.884 12 O -0.373 6.373 13 C -0.046 4.046 14 O -0.247 6.247 15 C -0.044 4.044 16 C -0.183 4.183 17 C -0.227 4.227 18 C 0.051 3.949 19 C -0.529 4.529 20 H 0.095 0.905 21 C -0.181 4.181 22 N -0.458 5.458 23 Si 0.803 3.197 24 H -0.186 1.186 25 H -0.194 1.194 26 H -0.183 1.183 27 C -0.172 4.172 28 C -0.154 4.154 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.168 0.832 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.232 0.768 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.148 0.852 46 H 0.125 0.875 47 H 0.098 0.902 48 H 0.127 0.873 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.743 -22.606 11.862 25.966 hybrid contribution -2.059 2.153 0.718 3.065 sum 2.684 -20.453 12.580 24.162 Atomic orbital electron populations 1.23424 0.91587 1.07389 1.05703 1.87075 1.10409 1.12975 1.98173 1.23429 1.00674 0.93259 1.05198 1.21469 0.92332 0.95934 1.04007 1.21531 0.96831 0.93089 0.90429 0.92849 1.21793 0.94142 1.01901 1.01991 1.60440 1.40108 1.02260 1.29595 1.22447 1.01644 0.89734 0.94866 1.21845 0.86016 0.87763 0.98099 0.88419 1.86621 1.20406 1.78496 1.51814 1.23489 1.00967 0.94938 0.85214 1.85884 1.87031 1.18501 1.33315 1.18686 1.09010 0.81924 0.94746 1.20699 1.06300 0.94548 0.96783 1.20805 1.10924 0.94066 0.96883 1.17965 0.91284 0.94297 0.91319 1.19694 1.27770 0.92377 1.13105 0.90488 1.26750 0.92190 1.05199 0.93947 1.69886 1.16168 1.40320 1.19445 0.85252 0.79251 0.76315 0.78875 1.18577 1.19376 1.18305 1.20894 1.05247 0.92274 0.98805 1.20013 1.05052 0.94543 0.95794 0.89564 0.89919 0.87240 0.89328 0.89923 0.90967 0.89654 0.92798 0.91211 0.92614 0.83210 0.93072 0.89178 0.76791 0.91754 0.91191 0.85238 0.87542 0.90205 0.87297 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.76 113.37 1.22 0.13 16 2 S -0.31 -4.62 22.38 -56.49 -1.26 -5.89 16 3 C -0.08 -0.90 5.77 71.98 0.42 -0.48 16 4 C -0.10 -1.16 4.81 30.59 0.15 -1.01 16 5 C 0.09 1.12 2.65 44.91 0.12 1.24 16 6 H 0.05 0.59 7.80 -2.39 -0.02 0.57 16 7 C -0.14 -1.73 9.41 71.98 0.68 -1.05 16 8 N -0.69 -10.55 6.31 -491.57 -3.10 -13.65 16 9 C 0.04 0.66 5.16 86.30 0.44 1.11 16 10 C 0.12 2.72 3.49 30.60 0.11 2.83 16 11 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 12 O -0.57 -13.28 12.82 -144.34 -1.85 -15.13 16 13 C 0.03 0.83 4.37 71.98 0.31 1.14 16 14 O -0.33 -13.07 10.09 -85.28 -0.86 -13.93 16 15 C 0.00 0.01 6.71 22.79 0.15 0.16 16 16 C -0.16 -7.13 8.96 22.11 0.20 -6.93 16 17 C -0.21 -10.08 9.74 22.49 0.22 -9.86 16 18 C 0.05 2.92 5.57 -21.28 -0.12 2.81 16 19 C -0.50 -27.08 9.04 23.40 0.21 -26.87 16 20 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 21 C 0.03 1.68 5.13 85.24 0.44 2.12 16 22 N -0.83 -44.14 10.96 21.82 0.24 -43.90 16 23 Si 0.98 38.40 29.60 68.60 2.03 40.43 16 24 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 25 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 26 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 27 C -0.15 -8.28 8.64 22.48 0.19 -8.09 16 28 C -0.14 -6.72 9.92 22.11 0.22 -6.50 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 0.98 6.42 -2.39 -0.02 0.97 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.05 0.70 7.45 -2.38 -0.02 0.69 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 38 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.35 5.40 6.03 -89.69 -0.54 4.86 16 40 H 0.05 0.65 8.06 -2.39 -0.02 0.63 16 41 H 0.09 1.35 7.44 -2.39 -0.02 1.33 16 42 H 0.38 6.22 9.05 -74.06 -0.67 5.55 16 43 H 0.06 1.61 7.64 -2.39 -0.02 1.59 16 44 H 0.07 1.78 7.66 -2.39 -0.02 1.77 16 45 H 0.13 4.53 6.27 -2.91 -0.02 4.51 16 46 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 47 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 48 H 0.11 6.14 6.16 -2.91 -0.02 6.12 16 49 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -64.60 409.18 -0.11 -64.71 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: -0.27 Total: 36.61 kcal Atomic # 6 Polarization: -54.22 SS G_CDS: 4.96 Total: -49.26 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -2.86 Total: -57.55 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -2.71 Total: -29.06 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Atomic # 16 Polarization: -4.62 SS G_CDS: -1.26 Total: -5.89 kcal Total: -64.60 -0.11 -64.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819086347.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.204 kcal (2) G-P(sol) polarization free energy of solvation -64.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds