Wall clock time and date at job start Tue Mar 31 2020 22:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 S 1.81397 * 109.47311 * 180.02562 * 16 15 14 18 18 O 1.42106 * 108.57366 * 294.48464 * 17 16 15 19 19 O 1.42099 * 108.58137 * 65.51087 * 17 16 15 20 20 C 1.81402 * 101.92187 * 180.02562 * 17 16 15 21 21 C 1.53002 * 109.46906 * 179.97438 * 20 17 16 22 22 C 1.50701 * 109.46750 * 179.97438 * 21 20 17 23 23 C 1.38246 * 120.00014 * 269.72270 * 22 21 20 24 24 C 1.38234 * 119.99899 * 179.76950 * 23 22 21 25 25 C 1.38232 * 119.99897 * 0.50541 * 24 23 22 26 26 C 1.38239 * 120.00351 * 359.75177 * 25 24 23 27 27 C 1.38230 * 119.99712 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 30 30 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 31 31 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 32 32 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 33 33 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 34 34 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 35 35 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 36 36 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 37 37 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 38 38 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 39 39 H 1.09008 * 109.47237 * 300.00217 * 16 15 14 40 40 H 1.08999 * 109.47484 * 59.99634 * 16 15 14 41 41 H 1.09007 * 109.46998 * 299.99463 * 20 17 16 42 42 H 1.08992 * 109.47310 * 59.99440 * 20 17 16 43 43 H 1.08995 * 109.47223 * 299.99450 * 21 20 17 44 44 H 1.09000 * 109.47301 * 59.99922 * 21 20 17 45 45 H 1.07995 * 119.99661 * 0.02562 * 23 22 21 46 46 H 1.07999 * 119.99645 * 180.23433 * 24 23 22 47 47 H 1.08002 * 119.99693 * 179.72802 * 25 24 23 48 48 H 1.07998 * 120.00042 * 179.97438 * 26 25 24 49 49 H 1.07999 * 120.00175 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 16 2.2877 -0.6300 -6.3975 18 8 3.7085 -0.6061 -6.4037 19 8 1.6141 -1.8745 -6.5265 20 6 1.6859 0.4905 -7.6911 21 6 2.0939 -0.0491 -9.0634 22 6 1.5934 0.8814 -10.1380 23 6 0.3436 0.6850 -10.6953 24 6 -0.1174 1.5414 -11.6776 25 6 0.6755 2.5878 -12.1101 26 6 1.9275 2.7810 -11.5566 27 6 2.3862 1.9281 -10.5703 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.1263 -0.7995 1.2057 32 1 1.6053 -1.7197 1.2953 33 1 2.9286 -2.0221 3.0617 34 1 3.1263 -0.7997 -1.2054 35 1 1.6053 -1.7200 -1.2950 36 1 1.9883 0.9871 -2.3967 37 1 3.2127 -0.7042 -3.6399 38 1 1.6921 -1.6250 -3.7299 39 1 0.6155 0.2673 -4.9162 40 1 2.1358 1.1886 -4.8266 41 1 0.5994 0.5592 -7.6356 42 1 2.1203 1.4795 -7.5460 43 1 3.1803 -0.1175 -9.1186 44 1 1.6597 -1.0383 -9.2087 45 1 -0.2742 -0.1349 -10.3602 46 1 -1.0954 1.3902 -12.1103 47 1 0.3171 3.2543 -12.8807 48 1 2.5471 3.5984 -11.8948 49 1 3.3644 2.0787 -10.1381 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877500821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:54 Heat of formation + Delta-G solvation = -74.270018 kcal Electronic energy + Delta-G solvation = -25712.709156 eV Core-core repulsion = 21958.871996 eV Total energy + Delta-G solvation = -3753.837161 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.80278 -37.33973 -37.29901 -36.36309 -34.92650 -34.76595 -32.44955 -31.38263 -30.34837 -30.06501 -26.46302 -25.52313 -24.82154 -23.07756 -22.94530 -22.18332 -21.45843 -19.45962 -19.15155 -17.61267 -16.99921 -16.81052 -16.68358 -16.25987 -15.99087 -15.62000 -15.49697 -14.65571 -14.36102 -14.25589 -14.04459 -13.89537 -13.83466 -13.70369 -13.65540 -13.19063 -12.80809 -12.65489 -12.39614 -12.30982 -12.07496 -11.96961 -11.87150 -11.83597 -11.64214 -11.43111 -11.39988 -11.19336 -11.01085 -10.79055 -10.69288 -10.24898 -10.09086 -9.85117 -9.47495 -9.41708 -9.22485 -8.48037 -8.37756 -8.29605 -6.32295 -4.00699 -0.44520 0.83326 0.90637 2.36576 3.12057 3.32271 3.45094 3.47125 3.62457 3.65785 4.13344 4.14222 4.15928 4.27503 4.37095 4.46262 4.53041 4.56240 4.59733 4.64729 4.87619 4.88585 5.01288 5.10513 5.19414 5.27797 5.32401 5.43125 5.46731 5.51632 5.55319 5.59251 5.73772 5.96620 5.99826 6.03366 6.08870 6.25952 6.38045 6.50131 6.53661 6.82904 7.00618 7.06398 7.14234 7.38060 7.43858 7.58223 8.26137 8.50045 8.92398 9.70895 11.08098 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027566 B = 0.001527 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.486303 B =18326.781067 C =18718.674470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.076 4.076 3 H 0.056 0.944 4 C 0.013 3.987 5 C -0.595 4.595 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.915 5.915 9 Si 1.068 2.932 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.058 3.942 14 N -0.678 5.678 15 C 0.068 3.932 16 C -0.608 4.608 17 S 2.418 3.582 18 O -0.936 6.936 19 O -0.933 6.933 20 C -0.608 4.608 21 C -0.072 4.072 22 C -0.077 4.077 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.118 4.118 27 C -0.116 4.116 28 H 0.040 0.960 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.004 0.996 32 H 0.008 0.992 33 H 0.268 0.732 34 H 0.028 0.972 35 H 0.070 0.930 36 H 0.340 0.660 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.142 0.858 40 H 0.131 0.869 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.125 0.875 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.468 7.885 -33.924 35.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.024 4.024 5 C -0.633 4.633 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.551 5.551 9 Si 0.896 3.104 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.071 4.071 14 N -0.310 5.310 15 C -0.063 4.063 16 C -0.737 4.737 17 S 2.600 3.400 18 O -0.933 6.933 19 O -0.930 6.930 20 C -0.736 4.736 21 C -0.111 4.111 22 C -0.078 4.078 23 C -0.134 4.134 24 C -0.136 4.136 25 C -0.141 4.141 26 C -0.136 4.136 27 C -0.134 4.134 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.022 0.978 32 H 0.026 0.974 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.158 0.842 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.160 0.840 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.143 0.857 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.525 6.809 -32.373 33.268 hybrid contribution 0.321 1.130 -1.599 1.984 sum -3.204 7.939 -33.972 35.034 Atomic orbital electron populations 1.21592 0.95426 1.00686 1.00336 1.21073 0.96225 0.98870 0.93297 0.92591 1.19259 0.95203 0.95689 0.92266 1.22022 1.38729 1.10315 0.92270 0.93213 1.25830 0.94724 0.97146 1.01384 1.70780 1.36203 1.14655 1.33504 0.83560 0.76046 0.75101 0.75659 1.20839 1.21548 1.21483 1.22259 0.97555 0.97972 0.89279 1.60571 1.63716 1.05843 1.00867 1.21582 0.98329 0.97839 0.88566 1.30382 1.13719 1.12915 1.16725 1.08103 0.76180 0.77379 0.78334 1.93602 1.27038 1.86799 1.85859 1.93605 1.76324 1.37804 1.85301 1.30388 1.13351 1.17041 1.12867 1.20312 1.02603 0.98665 0.89475 1.19638 0.94823 0.96404 0.96984 1.21133 0.95505 0.99774 0.96986 1.21185 0.99902 0.95191 0.97302 1.21211 0.94648 0.98113 1.00108 1.21183 0.96259 0.99355 0.96799 1.21124 0.99918 0.94858 0.97527 0.94130 0.92540 0.93827 0.97789 0.97379 0.92169 0.95343 0.91153 0.84191 0.93688 0.89456 0.84013 0.85045 0.84615 0.84718 0.89076 0.89044 0.85709 0.85866 0.86020 0.85882 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 2 C -0.08 -1.54 2.48 -90.62 -0.22 -1.76 16 3 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.01 0.34 3.76 -27.88 -0.10 0.24 16 5 C -0.60 -16.87 8.41 -34.44 -0.29 -17.16 16 6 H 0.05 1.38 7.06 -52.49 -0.37 1.01 16 7 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 8 N -0.91 -28.31 13.65 55.43 0.76 -27.55 16 9 Si 1.07 25.47 29.90 -169.99 -5.08 20.39 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.06 0.99 5.07 -3.82 -0.02 0.97 16 14 N -0.68 -9.32 5.96 -113.78 -0.68 -10.00 16 15 C 0.07 0.78 5.69 -3.82 -0.02 0.76 16 16 C -0.61 -4.54 6.07 37.16 0.23 -4.32 16 17 S 2.42 19.33 4.72 -107.50 -0.51 18.83 16 18 O -0.94 -10.76 18.10 -57.83 -1.05 -11.80 16 19 O -0.93 -10.80 18.10 -57.83 -1.05 -11.84 16 20 C -0.61 -2.98 5.79 37.16 0.22 -2.77 16 21 C -0.07 -0.45 5.35 -27.88 -0.15 -0.59 16 22 C -0.08 -0.52 5.13 -104.62 -0.54 -1.06 16 23 C -0.12 -0.74 9.70 -39.58 -0.38 -1.13 16 24 C -0.12 -0.70 10.05 -39.59 -0.40 -1.10 16 25 C -0.12 -0.71 10.05 -39.58 -0.40 -1.11 16 26 C -0.12 -0.70 10.05 -39.58 -0.40 -1.10 16 27 C -0.12 -0.74 9.70 -39.58 -0.38 -1.13 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.18 6.95 -51.93 -0.36 0.82 16 30 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 31 H 0.00 0.10 8.01 -51.93 -0.42 -0.31 16 32 H 0.01 0.21 8.00 -51.93 -0.42 -0.20 16 33 H 0.27 8.27 7.22 -40.82 -0.29 7.97 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.34 4.23 8.73 -39.29 -0.34 3.89 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.14 0.85 8.14 -51.92 -0.42 0.43 16 40 H 0.13 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.14 0.43 8.14 -51.92 -0.42 0.01 16 42 H 0.13 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 44 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 45 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 46 H 0.12 0.51 8.06 -52.49 -0.42 0.08 16 47 H 0.12 0.47 8.06 -52.49 -0.42 0.05 16 48 H 0.12 0.50 8.06 -52.49 -0.42 0.08 16 49 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 414.99 15.07 6.25 6.25 Total: -1.00 -37.22 414.99 -12.57 -49.79 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.58 Total: -1.02 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: -2.63 Total: -33.04 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.08 Total: -37.55 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -2.09 Total: -23.64 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.39 kcal Atomic # 16 Polarization: 19.33 SS G_CDS: -0.51 Total: 18.83 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -37.22 -12.57 -49.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877500821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.484 kcal (2) G-P(sol) polarization free energy of solvation -37.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds