Wall clock time and date at job start Tue Mar 31 2020 22:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.88944 * 2 1 4 4 C 1.54908 * 111.00784 * 236.11528 * 2 1 3 5 5 N 1.47422 * 104.83710 * 204.88016 * 4 2 1 6 6 C 1.34769 * 125.64884 * 204.09252 * 5 4 2 7 7 O 1.21727 * 120.00397 * 0.02562 * 6 5 4 8 8 C 1.46399 * 119.99634 * 180.02562 * 6 5 4 9 9 N 1.37626 * 126.33065 * 0.15732 * 8 6 5 10 10 H 0.96998 * 125.55399 * 359.97043 * 9 8 6 11 11 C 1.35642 * 108.90279 * 180.24150 * 9 8 6 12 12 C 1.35125 * 109.21774 * 359.76578 * 11 9 8 13 13 C 1.39099 * 126.32607 * 179.97438 * 8 6 5 14 14 C 1.48177 * 126.63317 * 0.03765 * 13 8 6 15 15 C 1.39446 * 120.13434 * 129.70675 * 14 13 8 16 16 C 1.37995 * 119.86690 * 179.97438 * 15 14 13 17 17 C 1.38343 * 120.13318 * 359.97438 * 16 15 14 18 18 C 1.38341 * 120.26152 * 0.02562 * 17 16 15 19 19 C 1.37988 * 120.13693 * 359.97438 * 18 17 16 20 20 C 1.47029 * 108.70104 * 24.35845 * 5 4 2 21 21 C 1.54337 * 107.26310 * 358.58435 * 20 5 4 22 22 H 1.09009 * 110.66711 * 96.52358 * 21 20 5 23 23 N 1.46500 * 110.84762 * 219.67006 * 21 20 5 24 24 C 1.36929 * 120.00308 * 268.69123 * 23 21 20 25 25 H 1.07999 * 120.00104 * 0.02562 * 24 23 21 26 26 C 1.38811 * 120.00273 * 179.97438 * 24 23 21 27 27 N 1.31621 * 119.99991 * 0.02562 * 26 24 23 28 28 Si 1.86803 * 120.00452 * 180.02562 * 26 24 23 29 29 H 1.48500 * 109.46779 * 59.99812 * 28 26 24 30 30 H 1.48499 * 109.47275 * 180.02562 * 28 26 24 31 31 H 1.48502 * 109.47105 * 300.00447 * 28 26 24 32 32 H 1.09002 * 109.47186 * 182.42289 * 1 2 3 33 33 H 1.08995 * 109.47173 * 302.42988 * 1 2 3 34 34 H 1.09002 * 109.46200 * 62.43089 * 1 2 3 35 35 H 1.09007 * 110.36240 * 86.04164 * 4 2 1 36 36 H 1.09004 * 110.46068 * 323.77246 * 4 2 1 37 37 H 1.07994 * 125.39459 * 179.77729 * 11 9 8 38 38 H 1.07999 * 126.09652 * 179.97438 * 12 11 9 39 39 H 1.07996 * 120.06783 * 359.95870 * 15 14 13 40 40 H 1.08003 * 119.92966 * 179.72146 * 16 15 14 41 41 H 1.08000 * 119.86444 * 180.02562 * 17 16 15 42 42 H 1.08006 * 119.92995 * 180.02562 * 18 17 16 43 43 H 1.07993 * 120.06532 * 180.02562 * 19 18 17 44 44 H 1.08998 * 109.87911 * 118.12623 * 20 5 4 45 45 H 1.08991 * 109.88420 * 239.29648 * 20 5 4 46 46 H 0.97005 * 119.99787 * 88.70236 * 23 21 20 47 47 H 0.96999 * 120.00084 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0854 -0.8062 -1.2005 5 7 3.4276 -1.2421 -0.7741 6 6 4.4479 -1.5600 -1.5951 7 8 4.3003 -1.4980 -2.8018 8 6 5.7340 -1.9799 -1.0356 9 7 6.0423 -2.0983 0.3004 10 1 5.4383 -1.9153 1.0370 11 6 7.3303 -2.5067 0.4197 12 6 7.8638 -2.6611 -0.8122 13 6 6.8691 -2.3364 -1.7563 14 6 7.0077 -2.3630 -3.2313 15 6 8.0873 -1.7283 -3.8445 16 6 8.2113 -1.7569 -5.2186 17 6 7.2676 -2.4142 -5.9875 18 6 6.1944 -3.0457 -5.3848 19 6 6.0596 -3.0239 -4.0117 20 6 3.4667 -1.2786 0.6953 21 6 2.0870 -0.8078 1.2020 22 1 1.4463 -1.6617 1.4228 23 7 2.2294 0.0495 2.3813 24 6 2.2013 -0.5004 3.6350 25 1 2.0746 -1.5662 3.7545 26 6 2.3368 0.3119 4.7525 27 7 2.4918 1.6108 4.6070 28 14 2.2992 -0.4384 6.4628 29 1 3.4050 -1.4204 6.5969 30 1 2.4627 0.6337 7.4773 31 1 0.9994 -1.1248 6.6738 32 1 -0.3634 -1.0268 0.0434 33 1 -0.3633 0.5511 0.8674 34 1 -0.3632 0.4757 -0.9110 35 1 2.1555 -0.1714 -2.0839 36 1 1.4529 -1.6703 -1.4045 37 1 7.8475 -2.6810 1.3515 38 1 8.8725 -2.9769 -1.0336 39 1 8.8248 -1.2150 -3.2453 40 1 9.0447 -1.2618 -5.6949 41 1 7.3691 -2.4342 -7.0625 42 1 5.4609 -3.5576 -5.9903 43 1 5.2216 -3.5176 -3.5424 44 1 3.6616 -2.2955 1.0357 45 1 4.2430 -0.6074 1.0622 46 1 2.3435 1.0069 2.2741 47 1 2.5862 2.1785 5.3878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939516066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:50 Heat of formation + Delta-G solvation = 56.187452 kcal Electronic energy + Delta-G solvation = -29128.482577 eV Core-core repulsion = 25277.151277 eV Total energy + Delta-G solvation = -3851.331301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.39923 -39.40733 -38.66609 -37.47943 -34.24420 -32.94841 -32.23814 -30.94103 -30.76527 -29.90872 -28.69907 -27.67822 -26.23812 -24.27686 -23.14556 -22.39677 -22.02422 -20.88293 -20.63326 -20.02066 -19.21856 -17.61503 -17.29204 -16.53807 -16.09896 -15.97654 -15.23746 -15.02417 -14.79816 -14.58704 -14.23768 -13.83347 -13.67811 -13.57237 -13.29022 -13.23319 -13.07282 -12.87298 -12.77339 -12.71925 -12.41512 -12.24605 -12.12266 -11.66442 -11.26031 -11.12389 -11.06368 -10.93277 -10.85485 -10.72046 -10.40474 -10.15530 -9.99788 -9.83260 -9.28407 -9.14232 -8.73475 -8.56352 -8.42544 -7.89392 -7.25511 -5.98525 -3.30895 1.14032 1.60025 1.78102 2.75706 3.01320 3.29148 3.29403 3.35253 3.36365 3.47507 4.00776 4.38909 4.60795 4.84316 4.94114 4.99249 5.04910 5.06560 5.11990 5.17238 5.26151 5.37518 5.40979 5.46400 5.56143 5.62871 5.68988 5.72289 5.73517 5.75867 5.89695 6.00403 6.05567 6.08211 6.14864 6.21576 6.22856 6.31301 6.40226 6.50375 6.51900 6.64076 6.69981 6.72960 6.79724 6.96405 7.14816 7.40502 7.48457 7.65718 8.17970 8.29523 9.30359 9.82769 10.17824 11.22763 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.002936 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.305540 B = 9533.229586 C =10861.995607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.114 4.114 3 H 0.084 0.916 4 C 0.116 3.884 5 N -0.614 5.614 6 C 0.596 3.404 7 O -0.529 6.529 8 C -0.032 4.032 9 N -0.535 5.535 10 H 0.426 0.574 11 C 0.021 3.979 12 C -0.199 4.199 13 C -0.054 4.054 14 C -0.010 4.010 15 C -0.107 4.107 16 C -0.130 4.130 17 C -0.124 4.124 18 C -0.126 4.126 19 C -0.065 4.065 20 C 0.059 3.941 21 C 0.180 3.820 22 H 0.072 0.928 23 N -0.710 5.710 24 C -0.256 4.256 25 H 0.072 0.928 26 C -0.004 4.004 27 N -0.926 5.926 28 Si 0.908 3.092 29 H -0.285 1.285 30 H -0.290 1.290 31 H -0.284 1.284 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.172 0.828 38 H 0.143 0.857 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.388 0.612 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.401 -8.152 -14.248 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.134 4.134 3 H 0.102 0.898 4 C -0.006 4.006 5 N -0.347 5.347 6 C 0.386 3.614 7 O -0.406 6.406 8 C -0.146 4.146 9 N -0.136 5.136 10 H 0.270 0.730 11 C -0.115 4.115 12 C -0.223 4.223 13 C -0.063 4.063 14 C -0.011 4.011 15 C -0.125 4.125 16 C -0.148 4.148 17 C -0.142 4.142 18 C -0.144 4.144 19 C -0.083 4.083 20 C -0.068 4.068 21 C 0.068 3.932 22 H 0.090 0.910 23 N -0.349 5.349 24 C -0.387 4.387 25 H 0.090 0.910 26 C -0.202 4.202 27 N -0.573 5.573 28 Si 0.739 3.261 29 H -0.211 1.211 30 H -0.216 1.216 31 H -0.210 1.210 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.189 0.811 38 H 0.161 0.839 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.222 0.778 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.194 -8.155 -14.593 18.199 hybrid contribution -0.072 0.084 1.576 1.580 sum 7.122 -8.070 -13.018 16.891 Atomic orbital electron populations 1.21592 0.93641 1.01881 1.01879 1.22663 0.96525 0.99820 0.94436 0.89779 1.22265 0.82208 0.98219 0.97926 1.48427 1.12389 1.66450 1.07476 1.16677 0.81421 0.77602 0.85696 1.90850 1.82171 1.54497 1.13083 1.20395 0.96108 1.15002 0.83123 1.42853 1.12440 1.50808 1.07461 0.72979 1.21983 0.84984 1.04538 0.99972 1.20839 0.99892 1.10522 0.91015 1.18502 0.92150 1.03907 0.91754 1.18095 0.95068 0.97813 0.90131 1.21132 0.97581 0.99224 0.94544 1.20956 0.99525 1.00607 0.93736 1.21102 0.95118 0.98613 0.99396 1.21004 0.98103 1.00596 0.94712 1.21111 0.96816 0.97102 0.93265 1.23534 1.04379 1.00345 0.78553 1.21218 0.90901 0.94050 0.87079 0.91043 1.42374 1.86215 1.06261 1.00064 1.19185 1.43792 0.92582 0.83155 0.90992 1.24785 1.01914 0.95418 0.98059 1.69647 1.55268 1.02870 1.29491 0.86269 0.77970 0.77881 0.84019 1.21134 1.21561 1.21044 0.92758 0.91364 0.93060 0.90648 0.91474 0.81104 0.83915 0.86264 0.86437 0.86648 0.86474 0.86382 0.92403 0.90970 0.77770 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.30 37.16 0.35 -1.43 16 2 C -0.11 -1.72 3.27 -88.47 -0.29 -2.01 16 3 H 0.08 1.36 8.01 -51.93 -0.42 0.94 16 4 C 0.12 1.68 6.37 -2.53 -0.02 1.67 16 5 N -0.61 -9.70 3.33 -172.15 -0.57 -10.27 16 6 C 0.60 10.14 7.79 -12.98 -0.10 10.04 16 7 O -0.53 -9.92 13.68 5.16 0.07 -9.85 16 8 C -0.03 -0.50 6.91 -81.66 -0.56 -1.06 16 9 N -0.54 -7.22 5.61 -9.24 -0.05 -7.27 16 10 H 0.43 5.60 4.92 -40.82 -0.20 5.40 16 11 C 0.02 0.25 11.86 -16.97 -0.20 0.05 16 12 C -0.20 -2.45 10.73 -39.67 -0.43 -2.87 16 13 C -0.05 -0.80 5.67 -104.48 -0.59 -1.39 16 14 C -0.01 -0.15 5.27 -104.91 -0.55 -0.71 16 15 C -0.11 -1.38 9.74 -39.22 -0.38 -1.76 16 16 C -0.13 -1.50 10.03 -39.63 -0.40 -1.90 16 17 C -0.12 -1.42 10.04 -39.50 -0.40 -1.82 16 18 C -0.13 -1.60 10.03 -39.63 -0.40 -1.99 16 19 C -0.06 -0.94 7.64 -39.22 -0.30 -1.24 16 20 C 0.06 0.93 4.87 -3.05 -0.01 0.92 16 21 C 0.18 3.13 3.08 -66.09 -0.20 2.92 16 22 H 0.07 1.25 7.96 -51.92 -0.41 0.83 16 23 N -0.71 -15.64 5.15 -51.64 -0.27 -15.91 16 24 C -0.26 -6.35 9.96 -15.06 -0.15 -6.50 16 25 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 26 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 27 N -0.93 -25.94 13.06 55.49 0.72 -25.22 16 28 Si 0.91 20.73 29.55 -169.99 -5.02 15.70 16 29 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 30 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 31 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 32 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.10 8.04 -51.92 -0.42 0.68 16 36 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 37 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 43 H 0.12 1.80 7.36 -52.49 -0.39 1.42 16 44 H 0.06 0.86 7.25 -51.93 -0.38 0.48 16 45 H 0.07 1.23 6.96 -51.93 -0.36 0.87 16 46 H 0.39 9.31 7.76 -40.82 -0.32 9.00 16 47 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -29.78 384.91 -10.71 -40.49 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -6.66 Total: 15.83 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -4.73 Total: -9.30 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.17 Total: -58.67 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.07 Total: -9.85 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.78 -10.71 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939516066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.680 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds