Wall clock time and date at job start Tue Mar 31 2020 22:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.88944 * 2 1 4 4 C 1.54908 * 111.00784 * 236.11528 * 2 1 3 5 5 N 1.47422 * 104.83710 * 204.88016 * 4 2 1 6 6 C 1.34769 * 125.64884 * 204.09252 * 5 4 2 7 7 O 1.21727 * 120.00397 * 0.02562 * 6 5 4 8 8 C 1.46399 * 119.99634 * 180.02562 * 6 5 4 9 9 N 1.37626 * 126.33065 * 0.15732 * 8 6 5 10 10 H 0.96998 * 125.55399 * 359.97043 * 9 8 6 11 11 C 1.35642 * 108.90279 * 180.24150 * 9 8 6 12 12 C 1.35125 * 109.21774 * 359.76578 * 11 9 8 13 13 C 1.39099 * 126.32607 * 179.97438 * 8 6 5 14 14 C 1.48177 * 126.63317 * 0.03765 * 13 8 6 15 15 C 1.39446 * 120.13434 * 129.70675 * 14 13 8 16 16 C 1.37995 * 119.86690 * 179.97438 * 15 14 13 17 17 C 1.38343 * 120.13318 * 359.97438 * 16 15 14 18 18 C 1.38341 * 120.26152 * 0.02562 * 17 16 15 19 19 C 1.37988 * 120.13693 * 359.97438 * 18 17 16 20 20 C 1.47029 * 108.70104 * 24.35845 * 5 4 2 21 21 C 1.54337 * 107.26310 * 358.58435 * 20 5 4 22 22 H 1.09009 * 110.66711 * 96.52358 * 21 20 5 23 23 N 1.46500 * 110.84762 * 219.67006 * 21 20 5 24 24 C 1.36929 * 120.00308 * 268.69123 * 23 21 20 25 25 H 1.07999 * 120.00104 * 0.02562 * 24 23 21 26 26 C 1.38811 * 120.00273 * 179.97438 * 24 23 21 27 27 N 1.31621 * 119.99991 * 0.02562 * 26 24 23 28 28 Si 1.86803 * 120.00452 * 180.02562 * 26 24 23 29 29 H 1.48500 * 109.46779 * 59.99812 * 28 26 24 30 30 H 1.48499 * 109.47275 * 180.02562 * 28 26 24 31 31 H 1.48502 * 109.47105 * 300.00447 * 28 26 24 32 32 H 1.09002 * 109.47186 * 182.42289 * 1 2 3 33 33 H 1.08995 * 109.47173 * 302.42988 * 1 2 3 34 34 H 1.09002 * 109.46200 * 62.43089 * 1 2 3 35 35 H 1.09007 * 110.36240 * 86.04164 * 4 2 1 36 36 H 1.09004 * 110.46068 * 323.77246 * 4 2 1 37 37 H 1.07994 * 125.39459 * 179.77729 * 11 9 8 38 38 H 1.07999 * 126.09652 * 179.97438 * 12 11 9 39 39 H 1.07996 * 120.06783 * 359.95870 * 15 14 13 40 40 H 1.08003 * 119.92966 * 179.72146 * 16 15 14 41 41 H 1.08000 * 119.86444 * 180.02562 * 17 16 15 42 42 H 1.08006 * 119.92995 * 180.02562 * 18 17 16 43 43 H 1.07993 * 120.06532 * 180.02562 * 19 18 17 44 44 H 1.08998 * 109.87911 * 118.12623 * 20 5 4 45 45 H 1.08991 * 109.88420 * 239.29648 * 20 5 4 46 46 H 0.97005 * 119.99787 * 88.70236 * 23 21 20 47 47 H 0.96999 * 120.00084 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0854 -0.8062 -1.2005 5 7 3.4276 -1.2421 -0.7741 6 6 4.4479 -1.5600 -1.5951 7 8 4.3003 -1.4980 -2.8018 8 6 5.7340 -1.9799 -1.0356 9 7 6.0423 -2.0983 0.3004 10 1 5.4383 -1.9153 1.0370 11 6 7.3303 -2.5067 0.4197 12 6 7.8638 -2.6611 -0.8122 13 6 6.8691 -2.3364 -1.7563 14 6 7.0077 -2.3630 -3.2313 15 6 8.0873 -1.7283 -3.8445 16 6 8.2113 -1.7569 -5.2186 17 6 7.2676 -2.4142 -5.9875 18 6 6.1944 -3.0457 -5.3848 19 6 6.0596 -3.0239 -4.0117 20 6 3.4667 -1.2786 0.6953 21 6 2.0870 -0.8078 1.2020 22 1 1.4463 -1.6617 1.4228 23 7 2.2294 0.0495 2.3813 24 6 2.2013 -0.5004 3.6350 25 1 2.0746 -1.5662 3.7545 26 6 2.3368 0.3119 4.7525 27 7 2.4918 1.6108 4.6070 28 14 2.2992 -0.4384 6.4628 29 1 3.4050 -1.4204 6.5969 30 1 2.4627 0.6337 7.4773 31 1 0.9994 -1.1248 6.6738 32 1 -0.3634 -1.0268 0.0434 33 1 -0.3633 0.5511 0.8674 34 1 -0.3632 0.4757 -0.9110 35 1 2.1555 -0.1714 -2.0839 36 1 1.4529 -1.6703 -1.4045 37 1 7.8475 -2.6810 1.3515 38 1 8.8725 -2.9769 -1.0336 39 1 8.8248 -1.2150 -3.2453 40 1 9.0447 -1.2618 -5.6949 41 1 7.3691 -2.4342 -7.0625 42 1 5.4609 -3.5576 -5.9903 43 1 5.2216 -3.5176 -3.5424 44 1 3.6616 -2.2955 1.0357 45 1 4.2430 -0.6074 1.0622 46 1 2.3435 1.0069 2.2741 47 1 2.5862 2.1785 5.3878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939516066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:49 Heat of formation + Delta-G solvation = 40.537525 kcal Electronic energy + Delta-G solvation = -29129.161209 eV Core-core repulsion = 25277.151277 eV Total energy + Delta-G solvation = -3852.009932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.47096 -40.65910 -39.62714 -38.82272 -35.92353 -34.22823 -33.35696 -32.59436 -31.73655 -30.93430 -29.81037 -29.14575 -27.37901 -25.98681 -24.32600 -23.35062 -23.24246 -22.13177 -21.69718 -21.32604 -20.24285 -19.13487 -18.79794 -17.60265 -17.41836 -17.13682 -16.51156 -16.37042 -15.92568 -15.68370 -15.55353 -15.38299 -14.96754 -14.77164 -14.54765 -14.37340 -14.15435 -14.12011 -13.84890 -13.75401 -13.63472 -13.43920 -13.15265 -13.01811 -12.92309 -12.82736 -12.28713 -12.20918 -12.07059 -11.99314 -11.87790 -11.74121 -11.51969 -11.22297 -10.95566 -10.30304 -9.82847 -9.69284 -9.43773 -9.11522 -8.94506 -7.96527 -5.27436 0.07378 0.62753 0.75429 1.49704 1.51009 1.57067 1.78195 1.81057 2.21730 2.26933 2.54834 3.02942 3.31782 3.36557 3.72561 3.75897 3.78911 3.91177 4.12029 4.13988 4.18749 4.21255 4.28716 4.34963 4.37974 4.41172 4.46972 4.63124 4.69220 4.74154 4.77825 4.78741 4.80052 5.00672 5.05564 5.10594 5.16445 5.24277 5.26928 5.28203 5.44156 5.52460 5.56498 5.68956 5.72409 5.80384 5.93296 6.20564 6.22699 6.36054 6.43267 7.02227 7.31304 8.00961 8.25698 9.25728 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.002936 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.305540 B = 9533.229586 C =10861.995607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 H 0.069 0.931 4 C 0.119 3.881 5 N -0.615 5.615 6 C 0.592 3.408 7 O -0.554 6.554 8 C -0.069 4.069 9 N -0.538 5.538 10 H 0.425 0.575 11 C 0.037 3.963 12 C -0.206 4.206 13 C -0.060 4.060 14 C -0.035 4.035 15 C -0.116 4.116 16 C -0.130 4.130 17 C -0.124 4.124 18 C -0.136 4.136 19 C -0.085 4.085 20 C 0.073 3.927 21 C 0.176 3.824 22 H 0.077 0.923 23 N -0.719 5.719 24 C -0.244 4.244 25 H 0.083 0.917 26 C -0.066 4.066 27 N -0.966 5.966 28 Si 0.968 3.032 29 H -0.275 1.275 30 H -0.302 1.302 31 H -0.279 1.279 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.209 0.791 38 H 0.166 0.834 39 H 0.131 0.869 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.132 0.868 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.375 0.625 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.532 -9.536 -15.070 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.125 4.125 3 H 0.088 0.912 4 C -0.003 4.003 5 N -0.348 5.348 6 C 0.383 3.617 7 O -0.433 6.433 8 C -0.183 4.183 9 N -0.138 5.138 10 H 0.269 0.731 11 C -0.099 4.099 12 C -0.230 4.230 13 C -0.069 4.069 14 C -0.035 4.035 15 C -0.134 4.134 16 C -0.147 4.147 17 C -0.142 4.142 18 C -0.154 4.154 19 C -0.104 4.104 20 C -0.053 4.053 21 C 0.065 3.935 22 H 0.095 0.905 23 N -0.358 5.358 24 C -0.376 4.376 25 H 0.101 0.899 26 C -0.259 4.259 27 N -0.615 5.615 28 Si 0.797 3.203 29 H -0.201 1.201 30 H -0.228 1.228 31 H -0.206 1.206 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.226 0.774 38 H 0.184 0.816 39 H 0.149 0.851 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.150 0.850 43 H 0.117 0.883 44 H 0.089 0.911 45 H 0.078 0.922 46 H 0.208 0.792 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.311 -9.588 -15.447 19.990 hybrid contribution -0.371 0.461 1.699 1.799 sum 7.941 -9.128 -13.747 18.313 Atomic orbital electron populations 1.21550 0.92105 1.02654 1.02093 1.22562 0.97704 0.98715 0.93487 0.91221 1.22311 0.81885 0.98689 0.97398 1.48440 1.12755 1.66376 1.07220 1.16933 0.82010 0.77265 0.85510 1.90820 1.82705 1.55794 1.14018 1.20313 0.96047 1.17697 0.84229 1.42854 1.13223 1.51033 1.06651 0.73056 1.22665 0.83979 1.01966 1.01312 1.21165 1.00564 1.10540 0.90681 1.18855 0.92585 1.03112 0.92391 1.18317 0.95989 0.98872 0.90354 1.21365 0.97348 0.99163 0.95558 1.21350 1.00198 0.99951 0.93250 1.21482 0.94235 0.97448 1.01002 1.21271 0.99083 1.00873 0.94142 1.21094 0.96741 0.98223 0.94336 1.23210 1.02743 1.00651 0.78698 1.21388 0.91790 0.93899 0.86421 0.90532 1.42469 1.86426 1.06109 1.00753 1.19579 1.40925 0.92967 0.84101 0.89949 1.25499 1.03223 0.95792 1.01401 1.69801 1.57920 1.04132 1.29668 0.85307 0.78215 0.76829 0.79942 1.20086 1.22827 1.20558 0.91481 0.93290 0.90899 0.90754 0.89829 0.77401 0.81630 0.85082 0.83497 0.83672 0.84982 0.88283 0.91101 0.92244 0.79234 0.94025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.30 71.98 0.67 -2.58 16 2 C -0.10 -3.11 3.27 -9.40 -0.03 -3.14 16 3 H 0.07 2.29 8.01 -2.39 -0.02 2.27 16 4 C 0.12 3.38 6.37 86.86 0.55 3.93 16 5 N -0.61 -19.41 3.33 -816.77 -2.72 -22.13 16 6 C 0.59 20.48 7.79 86.37 0.67 21.15 16 7 O -0.55 -21.35 13.68 -4.43 -0.06 -21.41 16 8 C -0.07 -2.18 6.91 40.57 0.28 -1.90 16 9 N -0.54 -14.08 5.61 -183.14 -1.03 -15.11 16 10 H 0.43 10.91 4.92 -92.71 -0.46 10.45 16 11 C 0.04 0.78 11.86 83.39 0.99 1.77 16 12 C -0.21 -4.75 10.73 22.21 0.24 -4.51 16 13 C -0.06 -1.77 5.67 -19.77 -0.11 -1.88 16 14 C -0.03 -1.02 5.27 -20.05 -0.11 -1.13 16 15 C -0.12 -2.87 9.74 22.50 0.22 -2.65 16 16 C -0.13 -2.70 10.03 22.24 0.22 -2.47 16 17 C -0.12 -2.57 10.04 22.32 0.22 -2.35 16 18 C -0.14 -3.35 10.03 22.23 0.22 -3.13 16 19 C -0.09 -2.55 7.64 22.50 0.17 -2.38 16 20 C 0.07 2.31 4.87 86.73 0.42 2.73 16 21 C 0.18 6.02 3.08 46.19 0.14 6.16 16 22 H 0.08 2.57 7.96 -2.38 -0.02 2.55 16 23 N -0.72 -31.87 5.15 -317.30 -1.64 -33.51 16 24 C -0.24 -12.01 9.96 84.03 0.84 -11.17 16 25 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 26 C -0.07 -3.48 5.50 84.86 0.47 -3.01 16 27 N -0.97 -55.24 13.06 21.65 0.28 -54.96 16 28 Si 0.97 42.63 29.55 68.60 2.03 44.65 16 29 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 30 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 31 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 32 H 0.07 1.55 8.11 -2.39 -0.02 1.53 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 2.15 8.04 -2.38 -0.02 2.13 16 36 H 0.08 2.11 8.04 -2.39 -0.02 2.09 16 37 H 0.21 2.66 8.06 -2.91 -0.02 2.63 16 38 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16 39 H 0.13 2.80 8.06 -2.91 -0.02 2.77 16 40 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 41 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 42 H 0.13 2.71 8.06 -2.91 -0.02 2.68 16 43 H 0.10 3.22 7.36 -2.91 -0.02 3.19 16 44 H 0.07 2.04 7.25 -2.39 -0.02 2.03 16 45 H 0.06 2.05 6.96 -2.39 -0.02 2.03 16 46 H 0.38 18.47 7.76 -92.70 -0.72 17.75 16 47 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -65.56 384.91 2.78 -62.78 By element: Atomic # 1 Polarization: 46.41 SS G_CDS: -0.18 Total: 46.23 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 6.08 Total: -6.56 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -5.10 Total: -125.70 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.06 Total: -21.41 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -65.56 2.78 -62.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939516066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.320 kcal (2) G-P(sol) polarization free energy of solvation -65.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds