Wall clock time and date at job start Tue Mar 31 2020 22:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.88909 * 2 1 4 4 C 1.54915 * 111.03575 * 236.09333 * 2 1 3 5 5 N 1.47418 * 104.83107 * 204.90180 * 4 2 1 6 6 C 1.34773 * 125.64758 * 204.17202 * 5 4 2 7 7 O 1.21707 * 120.00165 * 359.97434 * 6 5 4 8 8 C 1.46590 * 120.00185 * 179.97438 * 6 5 4 9 9 C 1.38048 * 126.00646 * 179.69456 * 8 6 5 10 10 C 1.39365 * 107.43909 * 179.84380 * 9 8 6 11 11 C 1.37825 * 107.65386 * 0.41776 * 10 9 8 12 12 C 1.47814 * 125.82155 * 179.70437 * 11 10 9 13 13 C 1.39593 * 120.14253 * 179.76318 * 12 11 10 14 14 C 1.37949 * 119.85187 * 179.71903 * 13 12 11 15 15 C 1.38370 * 120.14237 * 0.54314 * 14 13 12 16 16 C 1.38354 * 120.29600 * 359.75443 * 15 14 13 17 17 C 1.37952 * 120.15170 * 359.96525 * 16 15 14 18 18 N 1.36405 * 108.35266 * 359.73810 * 11 10 9 19 19 H 0.96993 * 125.72115 * 179.97438 * 18 11 10 20 20 C 1.47029 * 108.70495 * 24.13113 * 5 4 2 21 21 C 1.54327 * 107.26790 * 358.93814 * 20 5 4 22 22 H 1.08997 * 110.87056 * 96.24201 * 21 20 5 23 23 N 1.46497 * 110.71583 * 219.44194 * 21 20 5 24 24 C 1.36936 * 120.00157 * 268.52321 * 23 21 20 25 25 H 1.07999 * 120.00237 * 0.02562 * 24 23 21 26 26 C 1.38814 * 120.00050 * 180.02562 * 24 23 21 27 27 N 1.31619 * 119.99959 * 0.02562 * 26 24 23 28 28 Si 1.86791 * 120.00110 * 179.97438 * 26 24 23 29 29 H 1.48501 * 109.47355 * 90.00364 * 28 26 24 30 30 H 1.48508 * 109.47285 * 210.00340 * 28 26 24 31 31 H 1.48501 * 109.47187 * 330.00330 * 28 26 24 32 32 H 1.09000 * 109.47012 * 299.30079 * 1 2 3 33 33 H 1.08999 * 109.46864 * 59.29373 * 1 2 3 34 34 H 1.08992 * 109.47148 * 179.30130 * 1 2 3 35 35 H 1.08995 * 110.36257 * 323.74454 * 4 2 1 36 36 H 1.08997 * 110.36405 * 86.06173 * 4 2 1 37 37 H 1.07998 * 126.28319 * 359.97438 * 9 8 6 38 38 H 1.08003 * 126.17477 * 180.17905 * 10 9 8 39 39 H 1.08007 * 120.07427 * 359.97438 * 13 12 11 40 40 H 1.07996 * 119.93454 * 180.27557 * 14 13 12 41 41 H 1.08002 * 119.85176 * 179.74317 * 15 14 13 42 42 H 1.07999 * 119.92815 * 179.97438 * 16 15 14 43 43 H 1.07997 * 120.08068 * 180.02562 * 17 16 15 44 44 H 1.08993 * 109.88066 * 239.51797 * 20 5 4 45 45 H 1.08996 * 110.00664 * 118.42784 * 20 5 4 46 46 H 0.96996 * 119.99952 * 88.52453 * 23 21 20 47 47 H 0.97004 * 120.00137 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8066 -1.2000 5 7 3.4280 -1.2422 -0.7725 6 6 4.4494 -1.5589 -1.5928 7 8 4.3027 -1.4967 -2.7994 8 6 5.7371 -1.9784 -1.0318 9 6 6.8590 -2.3348 -1.7528 10 6 7.8581 -2.6600 -0.8372 11 6 7.3318 -2.5075 0.4274 12 6 8.0469 -2.7534 1.6975 13 6 7.3975 -2.5556 2.9172 14 6 8.0687 -2.7925 4.0989 15 6 9.3864 -3.2144 4.0769 16 6 10.0378 -3.4064 2.8715 17 6 9.3763 -3.1787 1.6825 18 7 6.0382 -2.0917 0.3070 19 1 5.4320 -1.9073 1.0414 20 6 3.4678 -1.2731 0.6969 21 6 2.0861 -0.8075 1.2025 22 1 1.4454 -1.6612 1.4231 23 7 2.2278 0.0502 2.3817 24 6 2.1990 -0.4994 3.6356 25 1 2.0722 -1.5653 3.7552 26 6 2.3328 0.3133 4.7529 27 7 2.4868 1.6123 4.6072 28 14 2.2927 -0.4363 6.4634 29 1 3.6711 -0.8055 6.8745 30 1 1.7375 0.5510 7.4237 31 1 1.4377 -1.6504 6.4518 32 1 -0.3633 0.5029 0.8962 33 1 -0.3633 0.5248 -0.8836 34 1 -0.3633 -1.0275 -0.0125 35 1 1.4531 -1.6706 -1.4022 36 1 2.1567 -0.1721 -2.0834 37 1 6.9471 -2.3555 -2.8290 38 1 8.8623 -2.9781 -1.0756 39 1 6.3704 -2.2218 2.9357 40 1 7.5662 -2.6442 5.0432 41 1 9.9087 -3.3944 5.0049 42 1 11.0664 -3.7354 2.8614 43 1 9.8858 -3.3293 0.7423 44 1 4.2425 -0.5984 1.0609 45 1 3.6669 -2.2872 1.0433 46 1 2.3421 1.0074 2.2743 47 1 2.5799 2.1803 5.3880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939861112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:54 Heat of formation + Delta-G solvation = 50.269490 kcal Electronic energy + Delta-G solvation = -29108.462774 eV Core-core repulsion = 25256.874851 eV Total energy + Delta-G solvation = -3851.587923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.41260 -39.58669 -38.71993 -37.52019 -34.24460 -32.83980 -32.03483 -31.51825 -30.91104 -30.53483 -28.43840 -27.73710 -26.17499 -24.31735 -23.32575 -22.79702 -21.86420 -20.76398 -20.51714 -20.04179 -19.59682 -17.75757 -17.30036 -16.83918 -16.07084 -15.96124 -15.35375 -15.02511 -14.90914 -14.44202 -14.29829 -13.95776 -13.78385 -13.70899 -13.49294 -13.26289 -13.15201 -12.79976 -12.75984 -12.66987 -12.53936 -12.37590 -12.15674 -11.67995 -11.40264 -11.26528 -11.14745 -11.09889 -10.87372 -10.72083 -10.38553 -10.15644 -10.01086 -9.83840 -9.54545 -9.15464 -9.07194 -9.04106 -8.53293 -7.65223 -7.25961 -5.98971 -3.31307 0.73187 1.29514 1.78220 2.77887 2.94833 3.19774 3.28059 3.35071 3.36643 3.49686 3.81978 4.38273 4.53774 4.58731 4.74021 4.84933 4.93080 4.96419 5.02624 5.11081 5.25312 5.32222 5.34356 5.39694 5.45364 5.47585 5.55054 5.68009 5.74166 5.74658 5.88934 5.89830 5.98501 6.02976 6.04975 6.07611 6.20232 6.28561 6.30302 6.33198 6.41096 6.42291 6.51533 6.69798 6.80038 6.82613 6.93313 7.34916 7.48706 7.62448 8.17339 8.24849 9.30045 9.82224 10.17436 11.22365 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007028 B = 0.004844 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3982.881844 B = 5779.078362 C = 9495.648113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.084 0.916 4 C 0.115 3.885 5 N -0.613 5.613 6 C 0.600 3.400 7 O -0.540 6.540 8 C -0.036 4.036 9 C -0.111 4.111 10 C -0.188 4.188 11 C 0.079 3.921 12 C -0.021 4.021 13 C -0.115 4.115 14 C -0.109 4.109 15 C -0.121 4.121 16 C -0.117 4.117 17 C -0.101 4.101 18 N -0.529 5.529 19 H 0.423 0.577 20 C 0.058 3.942 21 C 0.180 3.820 22 H 0.073 0.927 23 N -0.709 5.709 24 C -0.256 4.256 25 H 0.073 0.927 26 C -0.003 4.003 27 N -0.925 5.925 28 Si 0.906 3.094 29 H -0.288 1.288 30 H -0.290 1.290 31 H -0.280 1.280 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.072 0.928 45 H 0.057 0.943 46 H 0.388 0.612 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.525 -8.741 -6.455 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.103 0.897 4 C -0.007 4.007 5 N -0.346 5.346 6 C 0.390 3.610 7 O -0.418 6.418 8 C -0.150 4.150 9 C -0.137 4.137 10 C -0.212 4.212 11 C -0.038 4.038 12 C -0.022 4.022 13 C -0.134 4.134 14 C -0.127 4.127 15 C -0.140 4.140 16 C -0.135 4.135 17 C -0.120 4.120 18 N -0.129 5.129 19 H 0.268 0.732 20 C -0.069 4.069 21 C 0.067 3.933 22 H 0.091 0.909 23 N -0.349 5.349 24 C -0.387 4.387 25 H 0.090 0.910 26 C -0.201 4.201 27 N -0.572 5.572 28 Si 0.736 3.264 29 H -0.215 1.215 30 H -0.216 1.216 31 H -0.206 1.206 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.167 0.833 38 H 0.163 0.837 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.222 0.778 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.281 -8.739 -6.835 14.465 hybrid contribution -0.137 0.078 1.506 1.515 sum 9.144 -8.661 -5.329 13.676 Atomic orbital electron populations 1.21594 0.93591 1.01766 1.02075 1.22672 0.96574 0.99830 0.94393 0.89725 1.22294 0.82168 0.98293 0.97978 1.48412 1.12412 1.66316 1.07502 1.16734 0.81456 0.77294 0.85550 1.90808 1.82505 1.55088 1.13437 1.20418 0.96744 1.15116 0.82743 1.21139 0.90918 1.02180 0.99471 1.21032 1.00176 1.09840 0.90176 1.19204 0.84770 1.05778 0.94095 1.18111 0.93736 1.00483 0.89841 1.21262 1.00179 0.99985 0.91942 1.21122 0.94793 0.98556 0.98207 1.21251 0.94901 0.99702 0.98104 1.21055 0.99924 1.00335 0.92222 1.21071 0.93004 0.99267 0.98662 1.42927 1.11565 1.50614 1.07842 0.73173 1.23550 1.04462 1.00348 0.78515 1.21219 0.90789 0.94132 0.87123 0.90919 1.42382 1.86185 1.06264 1.00063 1.19229 1.43761 0.92601 0.83125 0.90952 1.24769 1.01895 0.95388 0.97999 1.69656 1.55301 1.02842 1.29370 0.86225 0.77720 0.78095 0.84329 1.21529 1.21574 1.20569 0.91283 0.93026 0.92767 0.91351 0.90553 0.83305 0.83744 0.86070 0.85463 0.85952 0.85724 0.85383 0.91011 0.92460 0.77754 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.29 37.16 0.35 -1.43 16 2 C -0.11 -1.73 3.27 -88.47 -0.29 -2.02 16 3 H 0.08 1.36 8.01 -51.93 -0.42 0.95 16 4 C 0.12 1.68 6.38 -2.53 -0.02 1.67 16 5 N -0.61 -9.90 3.33 -172.09 -0.57 -10.47 16 6 C 0.60 10.42 7.82 -12.89 -0.10 10.32 16 7 O -0.54 -10.55 17.13 5.18 0.09 -10.46 16 8 C -0.04 -0.57 6.88 -81.94 -0.56 -1.13 16 9 C -0.11 -1.58 10.60 -39.23 -0.42 -2.00 16 10 C -0.19 -2.40 10.22 -39.31 -0.40 -2.80 16 11 C 0.08 1.09 6.93 -82.07 -0.57 0.52 16 12 C -0.02 -0.27 5.87 -104.97 -0.62 -0.88 16 13 C -0.12 -1.52 9.70 -39.18 -0.38 -1.90 16 14 C -0.11 -1.29 10.03 -39.64 -0.40 -1.69 16 15 C -0.12 -1.23 10.04 -39.49 -0.40 -1.63 16 16 C -0.12 -1.13 10.03 -39.64 -0.40 -1.52 16 17 C -0.10 -1.08 9.57 -39.18 -0.37 -1.45 16 18 N -0.53 -7.81 5.52 -5.81 -0.03 -7.85 16 19 H 0.42 6.20 3.95 -40.82 -0.16 6.04 16 20 C 0.06 0.95 4.86 -3.06 -0.01 0.93 16 21 C 0.18 3.15 3.09 -66.10 -0.20 2.95 16 22 H 0.07 1.28 7.99 -51.93 -0.41 0.86 16 23 N -0.71 -15.65 5.15 -51.65 -0.27 -15.91 16 24 C -0.26 -6.34 9.96 -15.06 -0.15 -6.49 16 25 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 26 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 27 N -0.93 -25.87 13.06 55.49 0.72 -25.14 16 28 Si 0.91 20.69 29.55 -169.99 -5.02 15.66 16 29 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 30 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 31 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 35 H 0.07 0.92 8.03 -51.93 -0.42 0.51 16 36 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 37 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 38 H 0.14 1.42 7.26 -52.48 -0.38 1.04 16 39 H 0.12 1.65 7.14 -52.48 -0.37 1.28 16 40 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 41 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.13 1.09 6.98 -52.49 -0.37 0.73 16 44 H 0.07 1.26 6.96 -51.93 -0.36 0.90 16 45 H 0.06 0.89 7.22 -51.93 -0.38 0.51 16 46 H 0.39 9.31 7.76 -40.82 -0.32 9.00 16 47 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 387.19 15.07 5.83 5.83 Total: -1.00 -29.60 387.19 -10.79 -40.39 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -6.51 Total: 16.70 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -5.04 Total: -8.76 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.15 Total: -59.38 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.60 -10.79 -40.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939861112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.660 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds