Wall clock time and date at job start Tue Mar 31 2020 22:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.88909 * 2 1 4 4 C 1.54915 * 111.03575 * 236.09333 * 2 1 3 5 5 N 1.47418 * 104.83107 * 204.90180 * 4 2 1 6 6 C 1.34773 * 125.64758 * 204.17202 * 5 4 2 7 7 O 1.21707 * 120.00165 * 359.97434 * 6 5 4 8 8 C 1.46590 * 120.00185 * 179.97438 * 6 5 4 9 9 C 1.38048 * 126.00646 * 179.69456 * 8 6 5 10 10 C 1.39365 * 107.43909 * 179.84380 * 9 8 6 11 11 C 1.37825 * 107.65386 * 0.41776 * 10 9 8 12 12 C 1.47814 * 125.82155 * 179.70437 * 11 10 9 13 13 C 1.39593 * 120.14253 * 179.76318 * 12 11 10 14 14 C 1.37949 * 119.85187 * 179.71903 * 13 12 11 15 15 C 1.38370 * 120.14237 * 0.54314 * 14 13 12 16 16 C 1.38354 * 120.29600 * 359.75443 * 15 14 13 17 17 C 1.37952 * 120.15170 * 359.96525 * 16 15 14 18 18 N 1.36405 * 108.35266 * 359.73810 * 11 10 9 19 19 H 0.96993 * 125.72115 * 179.97438 * 18 11 10 20 20 C 1.47029 * 108.70495 * 24.13113 * 5 4 2 21 21 C 1.54327 * 107.26790 * 358.93814 * 20 5 4 22 22 H 1.08997 * 110.87056 * 96.24201 * 21 20 5 23 23 N 1.46497 * 110.71583 * 219.44194 * 21 20 5 24 24 C 1.36936 * 120.00157 * 268.52321 * 23 21 20 25 25 H 1.07999 * 120.00237 * 0.02562 * 24 23 21 26 26 C 1.38814 * 120.00050 * 180.02562 * 24 23 21 27 27 N 1.31619 * 119.99959 * 0.02562 * 26 24 23 28 28 Si 1.86791 * 120.00110 * 179.97438 * 26 24 23 29 29 H 1.48501 * 109.47355 * 90.00364 * 28 26 24 30 30 H 1.48508 * 109.47285 * 210.00340 * 28 26 24 31 31 H 1.48501 * 109.47187 * 330.00330 * 28 26 24 32 32 H 1.09000 * 109.47012 * 299.30079 * 1 2 3 33 33 H 1.08999 * 109.46864 * 59.29373 * 1 2 3 34 34 H 1.08992 * 109.47148 * 179.30130 * 1 2 3 35 35 H 1.08995 * 110.36257 * 323.74454 * 4 2 1 36 36 H 1.08997 * 110.36405 * 86.06173 * 4 2 1 37 37 H 1.07998 * 126.28319 * 359.97438 * 9 8 6 38 38 H 1.08003 * 126.17477 * 180.17905 * 10 9 8 39 39 H 1.08007 * 120.07427 * 359.97438 * 13 12 11 40 40 H 1.07996 * 119.93454 * 180.27557 * 14 13 12 41 41 H 1.08002 * 119.85176 * 179.74317 * 15 14 13 42 42 H 1.07999 * 119.92815 * 179.97438 * 16 15 14 43 43 H 1.07997 * 120.08068 * 180.02562 * 17 16 15 44 44 H 1.08993 * 109.88066 * 239.51797 * 20 5 4 45 45 H 1.08996 * 110.00664 * 118.42784 * 20 5 4 46 46 H 0.96996 * 119.99952 * 88.52453 * 23 21 20 47 47 H 0.97004 * 120.00137 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8066 -1.2000 5 7 3.4280 -1.2422 -0.7725 6 6 4.4494 -1.5589 -1.5928 7 8 4.3027 -1.4967 -2.7994 8 6 5.7371 -1.9784 -1.0318 9 6 6.8590 -2.3348 -1.7528 10 6 7.8581 -2.6600 -0.8372 11 6 7.3318 -2.5075 0.4274 12 6 8.0469 -2.7534 1.6975 13 6 7.3975 -2.5556 2.9172 14 6 8.0687 -2.7925 4.0989 15 6 9.3864 -3.2144 4.0769 16 6 10.0378 -3.4064 2.8715 17 6 9.3763 -3.1787 1.6825 18 7 6.0382 -2.0917 0.3070 19 1 5.4320 -1.9073 1.0414 20 6 3.4678 -1.2731 0.6969 21 6 2.0861 -0.8075 1.2025 22 1 1.4454 -1.6612 1.4231 23 7 2.2278 0.0502 2.3817 24 6 2.1990 -0.4994 3.6356 25 1 2.0722 -1.5653 3.7552 26 6 2.3328 0.3133 4.7529 27 7 2.4868 1.6123 4.6072 28 14 2.2927 -0.4363 6.4634 29 1 3.6711 -0.8055 6.8745 30 1 1.7375 0.5510 7.4237 31 1 1.4377 -1.6504 6.4518 32 1 -0.3633 0.5029 0.8962 33 1 -0.3633 0.5248 -0.8836 34 1 -0.3633 -1.0275 -0.0125 35 1 1.4531 -1.6706 -1.4022 36 1 2.1567 -0.1721 -2.0834 37 1 6.9471 -2.3555 -2.8290 38 1 8.8623 -2.9781 -1.0756 39 1 6.3704 -2.2218 2.9357 40 1 7.5662 -2.6442 5.0432 41 1 9.9087 -3.3944 5.0049 42 1 11.0664 -3.7354 2.8614 43 1 9.8858 -3.3293 0.7423 44 1 4.2425 -0.5984 1.0609 45 1 3.6669 -2.2872 1.0433 46 1 2.3421 1.0074 2.2743 47 1 2.5799 2.1803 5.3880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939861112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:53 Heat of formation + Delta-G solvation = 34.764173 kcal Electronic energy + Delta-G solvation = -29109.135135 eV Core-core repulsion = 25256.874851 eV Total energy + Delta-G solvation = -3852.260284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.53800 -40.83658 -39.65169 -38.90982 -35.96049 -34.20690 -33.01032 -32.74381 -32.34621 -31.53015 -29.57547 -29.25086 -27.31674 -26.03882 -24.50009 -23.68235 -23.13109 -21.96812 -21.63453 -21.39172 -20.66504 -19.16442 -18.91497 -17.95097 -17.42786 -17.08874 -16.54537 -16.49577 -15.86326 -15.83213 -15.42263 -15.37649 -15.12958 -14.95038 -14.64415 -14.52146 -14.31592 -14.14499 -13.86943 -13.69698 -13.60411 -13.51492 -13.37843 -13.04923 -12.95999 -12.89546 -12.28962 -12.24703 -12.20235 -12.09192 -11.93676 -11.76477 -11.55176 -11.31438 -10.99373 -10.49581 -10.14386 -9.92525 -9.85053 -9.13837 -8.69570 -7.98870 -5.29799 -0.24943 0.44099 0.66544 1.46395 1.47924 1.55612 1.72671 1.76973 2.02025 2.24104 2.52341 2.93778 3.26804 3.32270 3.56279 3.67545 3.71639 3.73568 3.89008 4.01625 4.09398 4.17640 4.24118 4.25639 4.31946 4.36741 4.43508 4.51973 4.57298 4.61898 4.71444 4.77807 4.83531 4.95701 5.01695 5.02752 5.07622 5.08982 5.15028 5.26897 5.39256 5.44635 5.49253 5.50173 5.57216 5.77624 5.86203 6.00885 6.20043 6.21946 6.30092 6.91611 7.29223 7.98219 8.23244 9.23557 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007028 B = 0.004844 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3982.881844 B = 5779.078362 C = 9495.648113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 H 0.071 0.929 4 C 0.117 3.883 5 N -0.614 5.614 6 C 0.597 3.403 7 O -0.568 6.568 8 C -0.070 4.070 9 C -0.109 4.109 10 C -0.183 4.183 11 C 0.078 3.922 12 C -0.042 4.042 13 C -0.138 4.138 14 C -0.126 4.126 15 C -0.118 4.118 16 C -0.113 4.113 17 C -0.098 4.098 18 N -0.535 5.535 19 H 0.419 0.581 20 C 0.073 3.927 21 C 0.176 3.824 22 H 0.078 0.922 23 N -0.719 5.719 24 C -0.245 4.245 25 H 0.081 0.919 26 C -0.063 4.063 27 N -0.964 5.964 28 Si 0.964 3.036 29 H -0.287 1.287 30 H -0.299 1.299 31 H -0.268 1.268 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.159 0.841 38 H 0.179 0.821 39 H 0.102 0.898 40 H 0.129 0.871 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.154 0.846 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.376 0.624 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.263 -10.744 -6.742 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.124 4.124 3 H 0.090 0.910 4 C -0.005 4.005 5 N -0.346 5.346 6 C 0.388 3.612 7 O -0.448 6.448 8 C -0.183 4.183 9 C -0.135 4.135 10 C -0.207 4.207 11 C -0.040 4.040 12 C -0.043 4.043 13 C -0.157 4.157 14 C -0.144 4.144 15 C -0.136 4.136 16 C -0.131 4.131 17 C -0.117 4.117 18 N -0.135 5.135 19 H 0.263 0.737 20 C -0.053 4.053 21 C 0.065 3.935 22 H 0.096 0.904 23 N -0.357 5.357 24 C -0.377 4.377 25 H 0.099 0.901 26 C -0.256 4.256 27 N -0.613 5.613 28 Si 0.793 3.207 29 H -0.214 1.214 30 H -0.226 1.226 31 H -0.193 1.193 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.177 0.823 38 H 0.196 0.804 39 H 0.121 0.879 40 H 0.146 0.854 41 H 0.167 0.833 42 H 0.178 0.822 43 H 0.171 0.829 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.208 0.792 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.003 -10.788 -7.152 16.988 hybrid contribution -0.584 0.637 1.578 1.799 sum 10.419 -10.152 -5.573 15.578 Atomic orbital electron populations 1.21552 0.91919 1.02761 1.02170 1.22576 0.97851 0.98745 0.93276 0.91050 1.22388 0.81642 0.98914 0.97577 1.48433 1.12932 1.66081 1.07147 1.16957 0.82006 0.76902 0.85297 1.90776 1.83083 1.56620 1.14356 1.20395 0.96868 1.17597 0.83444 1.21425 0.90742 1.01139 1.00215 1.21401 1.01228 1.08993 0.89046 1.19647 0.84333 1.04775 0.95203 1.18238 0.94910 1.02091 0.89012 1.21275 0.99829 1.01443 0.93132 1.21284 0.95989 0.99389 0.97770 1.21616 0.94043 0.98150 0.99771 1.21491 1.01339 0.98878 0.91358 1.21430 0.91944 0.97929 1.00403 1.42924 1.12135 1.51075 1.07363 0.73664 1.23215 1.02969 1.00323 0.78806 1.21395 0.91468 0.94061 0.86596 0.90390 1.42466 1.86377 1.06114 1.00733 1.19594 1.41047 0.92898 0.84122 0.90121 1.25461 1.03100 0.95752 1.01274 1.69803 1.57860 1.04082 1.29605 0.85291 0.77667 0.77371 0.80344 1.21356 1.22635 1.19324 0.93268 0.90764 0.91378 0.89526 0.90261 0.82312 0.80378 0.87940 0.85350 0.83347 0.82236 0.82875 0.92621 0.91634 0.79172 0.93987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.29 71.98 0.67 -2.57 16 2 C -0.10 -3.12 3.27 -9.40 -0.03 -3.15 16 3 H 0.07 2.34 8.01 -2.39 -0.02 2.32 16 4 C 0.12 3.32 6.38 86.86 0.55 3.87 16 5 N -0.61 -19.87 3.33 -816.59 -2.72 -22.58 16 6 C 0.60 20.92 7.82 86.42 0.68 21.59 16 7 O -0.57 -22.26 17.13 -4.37 -0.07 -22.33 16 8 C -0.07 -2.22 6.88 40.36 0.28 -1.94 16 9 C -0.11 -3.00 10.60 22.50 0.24 -2.76 16 10 C -0.18 -4.32 10.22 22.44 0.23 -4.09 16 11 C 0.08 2.10 6.93 40.87 0.28 2.38 16 12 C -0.04 -1.03 5.87 -20.09 -0.12 -1.15 16 13 C -0.14 -3.71 9.70 22.53 0.22 -3.49 16 14 C -0.13 -2.93 10.03 22.23 0.22 -2.71 16 15 C -0.12 -2.09 10.04 22.33 0.22 -1.87 16 16 C -0.11 -1.76 10.03 22.23 0.22 -1.53 16 17 C -0.10 -1.81 9.57 22.53 0.22 -1.60 16 18 N -0.53 -16.06 5.52 -172.29 -0.95 -17.01 16 19 H 0.42 12.85 3.95 -92.71 -0.37 12.48 16 20 C 0.07 2.43 4.86 86.73 0.42 2.86 16 21 C 0.18 6.17 3.09 46.18 0.14 6.31 16 22 H 0.08 2.68 7.99 -2.39 -0.02 2.66 16 23 N -0.72 -32.38 5.15 -317.34 -1.63 -34.01 16 24 C -0.25 -12.25 9.96 84.03 0.84 -11.41 16 25 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 26 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 27 N -0.96 -55.53 13.06 21.65 0.28 -55.25 16 28 Si 0.96 43.07 29.55 68.60 2.03 45.10 16 29 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 30 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 31 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.55 8.13 -2.39 -0.02 1.54 16 35 H 0.09 2.18 8.03 -2.39 -0.02 2.16 16 36 H 0.08 2.24 8.04 -2.39 -0.02 2.23 16 37 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 38 H 0.18 2.84 7.26 -2.91 -0.02 2.82 16 39 H 0.10 3.01 7.14 -2.91 -0.02 2.99 16 40 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 41 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 42 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 43 H 0.15 1.97 6.98 -2.91 -0.02 1.95 16 44 H 0.06 2.05 6.96 -2.39 -0.02 2.03 16 45 H 0.07 2.06 7.22 -2.39 -0.02 2.04 16 46 H 0.38 18.71 7.76 -92.71 -0.72 17.99 16 47 H 0.25 14.22 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -65.04 387.19 2.60 -62.44 By element: Atomic # 1 Polarization: 47.86 SS G_CDS: -0.08 Total: 47.78 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 5.75 Total: -4.12 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -5.02 Total: -128.86 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.07 Total: -22.33 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -65.04 2.60 -62.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939861112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.202 kcal (2) G-P(sol) polarization free energy of solvation -65.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds