Wall clock time and date at job start Tue Mar 31 2020 22:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.52537 * 2 1 4 4 C 1.53190 * 109.50016 * 120.07805 * 2 1 3 5 5 N 1.46930 * 108.77380 * 174.58884 * 4 2 1 6 6 C 1.36943 * 120.63030 * 126.41954 * 5 4 2 7 7 H 1.08007 * 119.99373 * 331.88014 * 6 5 4 8 8 C 1.38804 * 120.00068 * 151.88264 * 6 5 4 9 9 N 1.31625 * 119.99741 * 160.59641 * 8 6 5 10 10 Si 1.86795 * 120.00332 * 340.59798 * 8 6 5 11 11 H 1.48504 * 109.47073 * 95.14855 * 10 8 6 12 12 H 1.48501 * 109.47160 * 215.15270 * 10 8 6 13 13 H 1.48498 * 109.46898 * 335.15303 * 10 8 6 14 14 C 1.46924 * 118.74032 * 306.38744 * 5 4 2 15 15 C 1.53198 * 108.77172 * 53.61219 * 14 5 4 16 16 C 1.53038 * 109.49921 * 239.92056 * 2 1 3 17 17 H 1.08998 * 109.44901 * 298.69254 * 16 2 1 18 18 N 1.46498 * 109.46259 * 58.66100 * 16 2 1 19 19 C 1.34773 * 119.99845 * 205.07257 * 18 16 2 20 20 O 1.21538 * 120.00345 * 359.97438 * 19 18 16 21 21 C 1.47915 * 119.99852 * 179.97438 * 19 18 16 22 22 C 1.38892 * 121.10888 * 354.55561 * 21 19 18 23 23 C 1.39272 * 119.57705 * 179.97438 * 22 21 19 24 24 N 1.31000 * 121.88377 * 359.97438 * 23 22 21 25 25 C 1.33538 * 121.82749 * 0.02562 * 24 23 22 26 26 C 1.40714 * 120.97366 * 179.97438 * 25 24 23 27 27 C 1.36065 * 119.74010 * 180.02562 * 26 25 24 28 28 C 1.39353 * 121.05723 * 0.25294 * 27 26 25 29 29 C 1.36246 * 120.83649 * 359.45892 * 28 27 26 30 30 C 1.40114 * 119.63986 * 0.55576 * 29 28 27 31 31 H 1.09008 * 109.46968 * 180.08519 * 1 2 3 32 32 H 1.09001 * 109.47190 * 300.07861 * 1 2 3 33 33 H 1.08992 * 109.47504 * 60.08547 * 1 2 3 34 34 H 1.09001 * 109.58593 * 54.80160 * 4 2 1 35 35 H 1.09002 * 109.58765 * 294.37527 * 4 2 1 36 36 H 0.97001 * 119.99861 * 179.97438 * 9 8 6 37 37 H 1.08996 * 109.58911 * 293.82783 * 14 5 4 38 38 H 1.09002 * 109.58370 * 173.39780 * 14 5 4 39 39 H 1.08995 * 109.49607 * 185.40737 * 15 14 5 40 40 H 1.09003 * 109.49226 * 65.31694 * 15 14 5 41 41 H 0.97003 * 119.99747 * 25.06452 * 18 16 2 42 42 H 1.07993 * 120.21501 * 0.02562 * 22 21 19 43 43 H 1.07991 * 119.05705 * 179.97438 * 23 22 21 44 44 H 1.07995 * 120.12994 * 0.02562 * 26 25 24 45 45 H 1.08003 * 119.46868 * 179.97438 * 27 26 25 46 46 H 1.07993 * 119.58452 * 179.74421 * 28 27 26 47 47 H 1.07995 * 120.18218 * 180.23806 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7237 1.2496 5 7 3.5046 -0.8289 1.1695 6 6 4.2936 -0.3791 2.1944 7 1 3.9495 0.4254 2.8277 8 6 5.5354 -0.9570 2.4194 9 7 6.4436 -0.3128 3.1213 10 14 5.9177 -2.6489 1.7262 11 1 6.6192 -2.5039 0.4253 12 1 6.7859 -3.3889 2.6770 13 1 4.6520 -3.3990 1.5251 14 6 4.1053 -1.4266 -0.0308 15 6 3.5708 -0.6949 -1.2661 16 6 2.0408 -0.7230 -1.2483 17 1 1.6967 -1.7572 -1.2350 18 7 1.5265 -0.0530 -2.4453 19 6 1.3971 -0.7387 -3.5983 20 8 1.7076 -1.9128 -3.6453 21 6 0.8774 -0.0623 -4.8067 22 6 0.4111 1.2449 -4.7528 23 6 -0.0709 1.8511 -5.9103 24 7 -0.0991 1.2235 -7.0598 25 6 0.3326 -0.0338 -7.1865 26 6 0.2936 -0.6911 -8.4300 27 6 0.7395 -1.9727 -8.5304 28 6 1.2319 -2.6518 -7.4176 29 6 1.2902 -2.0455 -6.1988 30 6 0.8390 -0.7264 -6.0588 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3633 0.5151 0.8893 33 1 -0.3634 0.5125 -0.8907 34 1 1.6053 -1.7215 1.2980 35 1 1.7637 -0.1578 2.1389 36 1 7.3113 -0.7168 3.2789 37 1 3.8376 -2.4817 -0.0867 38 1 5.1896 -1.3244 0.0138 39 1 3.9334 -1.1895 -2.1671 40 1 3.9159 0.3390 -1.2541 41 1 1.2790 0.8842 -2.4079 42 1 0.4230 1.7882 -3.8195 43 1 -0.4318 2.8677 -5.8588 44 1 -0.0887 -0.1804 -9.3014 45 1 0.7072 -2.4732 -9.4869 46 1 1.5758 -3.6700 -7.5234 47 1 1.6773 -2.5805 -5.3443 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942346104.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:46 Heat of formation + Delta-G solvation = 48.990054 kcal Electronic energy + Delta-G solvation = -29234.611590 eV Core-core repulsion = 25382.968187 eV Total energy + Delta-G solvation = -3851.643403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.38080 -39.81436 -37.98825 -37.37624 -34.90670 -33.77096 -32.80419 -31.67362 -30.86916 -30.63603 -29.79178 -26.51194 -25.86986 -24.59729 -23.84775 -22.99199 -22.08712 -21.45855 -20.78527 -19.74629 -18.38890 -17.80113 -17.61678 -16.77812 -16.21216 -15.78054 -15.33963 -15.14639 -15.00203 -14.70849 -14.43882 -14.37828 -14.17152 -13.70581 -13.54785 -13.46664 -13.41473 -13.15351 -12.80158 -12.18690 -12.07672 -12.02357 -11.87854 -11.72334 -11.66286 -11.61888 -11.11925 -10.75228 -10.68294 -10.64948 -10.46904 -10.17461 -10.07168 -9.92459 -9.53534 -9.45346 -9.10927 -9.00295 -8.66558 -8.51804 -7.02921 -5.98298 -3.36309 -0.19008 0.48435 1.46529 2.52041 2.89503 2.96530 3.31874 3.47875 3.50487 3.85446 3.92626 4.24671 4.31906 4.42886 4.50371 4.55341 4.79653 4.84143 4.88628 4.94554 5.04003 5.18350 5.22449 5.24794 5.30755 5.37884 5.46434 5.62198 5.72125 5.76537 5.77595 5.82105 5.94695 6.01210 6.03141 6.03616 6.14939 6.22590 6.27797 6.31497 6.34277 6.52849 6.55260 6.58310 6.63030 6.65504 6.85415 7.36558 7.52675 7.91720 8.04019 8.28803 8.88961 9.67772 10.04565 11.17422 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018158 B = 0.002799 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.652280 B =10002.590976 C =10861.503486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 H 0.077 0.923 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.262 4.262 7 H 0.086 0.914 8 C 0.025 3.975 9 N -0.908 5.908 10 Si 0.882 3.118 11 H -0.289 1.289 12 H -0.303 1.303 13 H -0.268 1.268 14 C 0.129 3.871 15 C -0.142 4.142 16 C 0.156 3.844 17 H 0.087 0.913 18 N -0.708 5.708 19 C 0.557 3.443 20 O -0.525 6.525 21 C -0.065 4.065 22 C -0.141 4.141 23 C 0.126 3.874 24 N -0.460 5.460 25 C 0.123 3.877 26 C -0.101 4.101 27 C -0.097 4.097 28 C -0.120 4.120 29 C -0.099 4.099 30 C -0.067 4.067 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.263 0.737 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.398 0.602 42 H 0.143 0.857 43 H 0.166 0.834 44 H 0.136 0.864 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.103 1.940 -20.185 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 H 0.095 0.905 4 C 0.031 3.969 5 N -0.329 5.329 6 C -0.390 4.390 7 H 0.104 0.896 8 C -0.175 4.175 9 N -0.551 5.551 10 Si 0.712 3.288 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.193 1.193 14 C 0.003 3.997 15 C -0.183 4.183 16 C 0.053 3.947 17 H 0.105 0.895 18 N -0.358 5.358 19 C 0.344 3.656 20 O -0.403 6.403 21 C -0.077 4.077 22 C -0.162 4.162 23 C -0.046 4.046 24 N -0.169 5.169 25 C 0.002 3.998 26 C -0.120 4.120 27 C -0.117 4.117 28 C -0.138 4.138 29 C -0.117 4.117 30 C -0.069 4.069 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.233 0.767 42 H 0.160 0.840 43 H 0.183 0.817 44 H 0.154 0.846 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.004 1.433 -20.877 25.749 hybrid contribution 0.585 -0.720 0.344 0.990 sum -14.419 0.713 -20.533 25.100 Atomic orbital electron populations 1.21777 0.95354 1.01782 1.01174 1.21985 0.94896 1.00965 0.95897 0.90451 1.20923 0.84407 0.97068 0.94475 1.44396 1.00732 1.71858 1.15959 1.18904 0.98331 1.13527 1.08259 0.89628 1.25289 0.96528 0.98023 0.97613 1.69824 1.04989 1.37324 1.42984 0.86955 0.77927 0.86749 0.77134 1.21645 1.23103 1.19293 1.21324 0.98097 0.94823 0.85448 1.22425 0.94194 1.02143 0.99513 1.21120 0.94156 0.97253 0.82200 0.89496 1.46186 1.65013 1.14411 1.10219 1.18041 0.78349 0.86434 0.82820 1.90600 1.50248 1.15745 1.83720 1.20463 0.98941 0.94473 0.93795 1.22445 0.98559 0.94385 1.00815 1.22905 0.94646 0.99954 0.87126 1.67803 1.14021 1.08233 1.26818 1.18892 0.97187 0.90249 0.93487 1.20774 1.00668 0.94753 0.95769 1.21012 0.97089 0.94395 0.99163 1.21130 0.99439 1.00581 0.92635 1.22121 0.96296 0.93413 0.99839 1.18696 1.00003 0.95845 0.92391 0.92770 0.92320 0.93383 0.95621 0.91278 0.92725 0.95292 0.90785 0.92222 0.91491 0.76721 0.83956 0.81687 0.84632 0.85238 0.85304 0.81267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.03 37.15 0.34 -1.28 16 2 C -0.12 -1.68 2.46 -90.51 -0.22 -1.90 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.16 2.89 5.80 -3.71 -0.02 2.87 16 5 N -0.61 -13.85 2.76 -172.31 -0.48 -14.33 16 6 C -0.26 -7.12 10.04 -15.06 -0.15 -7.27 16 7 H 0.09 2.47 8.06 -52.48 -0.42 2.05 16 8 C 0.02 0.70 5.25 -17.43 -0.09 0.61 16 9 N -0.91 -27.55 13.97 55.49 0.78 -26.77 16 10 Si 0.88 22.33 24.35 -169.99 -4.14 18.19 16 11 H -0.29 -7.13 6.73 56.52 0.38 -6.75 16 12 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 13 H -0.27 -6.65 6.40 56.52 0.36 -6.29 16 14 C 0.13 2.79 4.18 -3.71 -0.02 2.78 16 15 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 16 C 0.16 2.34 1.88 -67.89 -0.13 2.21 16 17 H 0.09 1.45 7.57 -51.93 -0.39 1.05 16 18 N -0.71 -8.54 4.32 -54.69 -0.24 -8.78 16 19 C 0.56 7.50 7.72 -12.30 -0.09 7.40 16 20 O -0.53 -8.58 13.18 5.33 0.07 -8.51 16 21 C -0.07 -0.77 5.94 -104.34 -0.62 -1.39 16 22 C -0.14 -1.23 9.60 -38.95 -0.37 -1.61 16 23 C 0.13 1.09 11.14 -17.52 -0.20 0.89 16 24 N -0.46 -5.15 10.30 -11.01 -0.11 -5.27 16 25 C 0.12 1.47 6.61 -84.87 -0.56 0.90 16 26 C -0.10 -0.99 9.99 -39.43 -0.39 -1.39 16 27 C -0.10 -0.83 9.94 -39.95 -0.40 -1.23 16 28 C -0.12 -1.18 9.96 -39.88 -0.40 -1.57 16 29 C -0.10 -1.22 9.25 -39.59 -0.37 -1.58 16 30 C -0.07 -0.84 5.76 -106.52 -0.61 -1.45 16 31 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.46 7.36 -51.93 -0.38 0.08 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.03 0.64 6.93 -51.93 -0.36 0.28 16 38 H 0.07 1.76 4.57 -51.93 -0.24 1.53 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.40 3.66 6.48 -40.82 -0.26 3.40 16 42 H 0.14 0.80 6.55 -52.49 -0.34 0.45 16 43 H 0.17 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 46 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.17 2.34 4.98 -52.49 -0.26 2.08 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -33.04 369.12 -9.52 -42.56 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.50 Total: 3.04 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -4.46 Total: -5.69 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.05 Total: -55.15 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.07 Total: -8.51 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.14 Total: 18.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.04 -9.52 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942346104.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.550 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds