Wall clock time and date at job start Tue Mar 31 2020 22:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.52537 * 2 1 4 4 C 1.53190 * 109.50016 * 120.07805 * 2 1 3 5 5 N 1.46930 * 108.77380 * 174.58884 * 4 2 1 6 6 C 1.36943 * 120.63030 * 126.41954 * 5 4 2 7 7 H 1.08007 * 119.99373 * 331.88014 * 6 5 4 8 8 C 1.38804 * 120.00068 * 151.88264 * 6 5 4 9 9 N 1.31625 * 119.99741 * 160.59641 * 8 6 5 10 10 Si 1.86795 * 120.00332 * 340.59798 * 8 6 5 11 11 H 1.48504 * 109.47073 * 95.14855 * 10 8 6 12 12 H 1.48501 * 109.47160 * 215.15270 * 10 8 6 13 13 H 1.48498 * 109.46898 * 335.15303 * 10 8 6 14 14 C 1.46924 * 118.74032 * 306.38744 * 5 4 2 15 15 C 1.53198 * 108.77172 * 53.61219 * 14 5 4 16 16 C 1.53038 * 109.49921 * 239.92056 * 2 1 3 17 17 H 1.08998 * 109.44901 * 298.69254 * 16 2 1 18 18 N 1.46498 * 109.46259 * 58.66100 * 16 2 1 19 19 C 1.34773 * 119.99845 * 205.07257 * 18 16 2 20 20 O 1.21538 * 120.00345 * 359.97438 * 19 18 16 21 21 C 1.47915 * 119.99852 * 179.97438 * 19 18 16 22 22 C 1.38892 * 121.10888 * 354.55561 * 21 19 18 23 23 C 1.39272 * 119.57705 * 179.97438 * 22 21 19 24 24 N 1.31000 * 121.88377 * 359.97438 * 23 22 21 25 25 C 1.33538 * 121.82749 * 0.02562 * 24 23 22 26 26 C 1.40714 * 120.97366 * 179.97438 * 25 24 23 27 27 C 1.36065 * 119.74010 * 180.02562 * 26 25 24 28 28 C 1.39353 * 121.05723 * 0.25294 * 27 26 25 29 29 C 1.36246 * 120.83649 * 359.45892 * 28 27 26 30 30 C 1.40114 * 119.63986 * 0.55576 * 29 28 27 31 31 H 1.09008 * 109.46968 * 180.08519 * 1 2 3 32 32 H 1.09001 * 109.47190 * 300.07861 * 1 2 3 33 33 H 1.08992 * 109.47504 * 60.08547 * 1 2 3 34 34 H 1.09001 * 109.58593 * 54.80160 * 4 2 1 35 35 H 1.09002 * 109.58765 * 294.37527 * 4 2 1 36 36 H 0.97001 * 119.99861 * 179.97438 * 9 8 6 37 37 H 1.08996 * 109.58911 * 293.82783 * 14 5 4 38 38 H 1.09002 * 109.58370 * 173.39780 * 14 5 4 39 39 H 1.08995 * 109.49607 * 185.40737 * 15 14 5 40 40 H 1.09003 * 109.49226 * 65.31694 * 15 14 5 41 41 H 0.97003 * 119.99747 * 25.06452 * 18 16 2 42 42 H 1.07993 * 120.21501 * 0.02562 * 22 21 19 43 43 H 1.07991 * 119.05705 * 179.97438 * 23 22 21 44 44 H 1.07995 * 120.12994 * 0.02562 * 26 25 24 45 45 H 1.08003 * 119.46868 * 179.97438 * 27 26 25 46 46 H 1.07993 * 119.58452 * 179.74421 * 28 27 26 47 47 H 1.07995 * 120.18218 * 180.23806 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7237 1.2496 5 7 3.5046 -0.8289 1.1695 6 6 4.2936 -0.3791 2.1944 7 1 3.9495 0.4254 2.8277 8 6 5.5354 -0.9570 2.4194 9 7 6.4436 -0.3128 3.1213 10 14 5.9177 -2.6489 1.7262 11 1 6.6192 -2.5039 0.4253 12 1 6.7859 -3.3889 2.6770 13 1 4.6520 -3.3990 1.5251 14 6 4.1053 -1.4266 -0.0308 15 6 3.5708 -0.6949 -1.2661 16 6 2.0408 -0.7230 -1.2483 17 1 1.6967 -1.7572 -1.2350 18 7 1.5265 -0.0530 -2.4453 19 6 1.3971 -0.7387 -3.5983 20 8 1.7076 -1.9128 -3.6453 21 6 0.8774 -0.0623 -4.8067 22 6 0.4111 1.2449 -4.7528 23 6 -0.0709 1.8511 -5.9103 24 7 -0.0991 1.2235 -7.0598 25 6 0.3326 -0.0338 -7.1865 26 6 0.2936 -0.6911 -8.4300 27 6 0.7395 -1.9727 -8.5304 28 6 1.2319 -2.6518 -7.4176 29 6 1.2902 -2.0455 -6.1988 30 6 0.8390 -0.7264 -6.0588 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3633 0.5151 0.8893 33 1 -0.3634 0.5125 -0.8907 34 1 1.6053 -1.7215 1.2980 35 1 1.7637 -0.1578 2.1389 36 1 7.3113 -0.7168 3.2789 37 1 3.8376 -2.4817 -0.0867 38 1 5.1896 -1.3244 0.0138 39 1 3.9334 -1.1895 -2.1671 40 1 3.9159 0.3390 -1.2541 41 1 1.2790 0.8842 -2.4079 42 1 0.4230 1.7882 -3.8195 43 1 -0.4318 2.8677 -5.8588 44 1 -0.0887 -0.1804 -9.3014 45 1 0.7072 -2.4732 -9.4869 46 1 1.5758 -3.6700 -7.5234 47 1 1.6773 -2.5805 -5.3443 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942346104.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:44 Heat of formation + Delta-G solvation = 27.725223 kcal Electronic energy + Delta-G solvation = -29235.533702 eV Core-core repulsion = 25382.968187 eV Total energy + Delta-G solvation = -3852.565516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.20806 -40.89528 -39.34245 -38.10116 -36.38600 -34.71933 -34.13563 -33.39239 -32.06572 -31.53674 -30.80587 -27.83566 -27.22775 -25.79162 -24.58128 -24.12250 -23.30384 -23.04929 -21.84693 -21.03371 -19.20309 -18.87627 -18.55833 -18.39660 -17.49592 -16.90754 -16.52538 -16.33213 -16.11950 -15.85644 -15.60122 -15.39431 -15.13785 -14.90381 -14.87155 -14.79521 -14.48501 -14.26535 -14.07685 -13.80044 -13.60152 -13.31942 -12.83869 -12.80608 -12.72410 -12.64453 -12.34280 -12.22630 -12.12768 -11.93799 -11.76165 -11.56865 -11.50130 -11.43541 -11.28884 -10.78819 -10.35213 -10.16837 -9.82337 -9.30841 -8.96722 -8.18570 -5.51271 -0.96793 -0.23671 0.65197 1.27482 1.38511 1.46368 1.71413 1.88905 2.08231 2.38763 3.03008 3.07940 3.26307 3.29946 3.41794 3.60625 3.66274 3.69436 3.84917 3.88218 4.07231 4.16217 4.20002 4.21510 4.38512 4.39364 4.51570 4.54044 4.58215 4.60826 4.72048 4.76236 4.79149 4.88140 4.88950 5.02278 5.04460 5.09013 5.13589 5.16939 5.30744 5.33227 5.38207 5.47711 5.52422 5.56527 5.85316 5.86789 6.11819 6.40110 6.79708 6.88602 7.06495 7.59325 8.00558 9.01017 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018158 B = 0.002799 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.652280 B =10002.590976 C =10861.503486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.103 4.103 3 H 0.081 0.919 4 C 0.150 3.850 5 N -0.619 5.619 6 C -0.243 4.243 7 H 0.061 0.939 8 C -0.031 4.031 9 N -0.955 5.955 10 Si 0.938 3.062 11 H -0.283 1.283 12 H -0.310 1.310 13 H -0.261 1.261 14 C 0.126 3.874 15 C -0.132 4.132 16 C 0.167 3.833 17 H 0.072 0.928 18 N -0.694 5.694 19 C 0.558 3.442 20 O -0.560 6.560 21 C -0.092 4.092 22 C -0.120 4.120 23 C 0.126 3.874 24 N -0.476 5.476 25 C 0.101 3.899 26 C -0.106 4.106 27 C -0.094 4.094 28 C -0.115 4.115 29 C -0.130 4.130 30 C -0.087 4.087 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.068 0.932 36 H 0.261 0.739 37 H 0.027 0.973 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.415 0.585 42 H 0.179 0.821 43 H 0.206 0.794 44 H 0.153 0.847 45 H 0.164 0.836 46 H 0.147 0.853 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.578 2.972 -22.551 28.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.123 4.123 3 H 0.099 0.901 4 C 0.025 3.975 5 N -0.343 5.343 6 C -0.373 4.373 7 H 0.079 0.921 8 C -0.226 4.226 9 N -0.601 5.601 10 Si 0.768 3.232 11 H -0.210 1.210 12 H -0.239 1.239 13 H -0.186 1.186 14 C 0.000 4.000 15 C -0.173 4.173 16 C 0.063 3.937 17 H 0.091 0.909 18 N -0.345 5.345 19 C 0.346 3.654 20 O -0.440 6.440 21 C -0.103 4.103 22 C -0.140 4.140 23 C -0.046 4.046 24 N -0.184 5.184 25 C -0.020 4.020 26 C -0.125 4.125 27 C -0.114 4.114 28 C -0.133 4.133 29 C -0.148 4.148 30 C -0.089 4.089 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.253 0.747 42 H 0.196 0.804 43 H 0.223 0.777 44 H 0.171 0.829 45 H 0.181 0.819 46 H 0.165 0.835 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.537 2.476 -23.284 29.255 hybrid contribution 1.267 -0.962 1.036 1.899 sum -16.270 1.514 -22.248 27.604 Atomic orbital electron populations 1.21732 0.92349 1.02232 1.03050 1.21786 0.97176 1.00112 0.93241 0.90093 1.21162 0.81633 0.97955 0.96723 1.44522 1.02462 1.71898 1.15412 1.18898 0.98287 1.11970 1.08105 0.92088 1.25842 0.96899 1.00918 0.98980 1.69935 1.05573 1.38798 1.45824 0.86041 0.77753 0.82974 0.76470 1.20981 1.23913 1.18579 1.21272 0.96807 0.95190 0.86683 1.22257 0.96362 1.01332 0.97309 1.20773 0.92135 0.97088 0.83718 0.90942 1.45860 1.64621 1.15076 1.08958 1.18335 0.77618 0.86051 0.83376 1.90601 1.51678 1.17432 1.84289 1.20362 1.01249 0.95910 0.92752 1.22854 0.95810 0.92946 1.02385 1.23619 0.93460 1.01296 0.86257 1.67863 1.14401 1.08030 1.28145 1.19175 0.97965 0.90847 0.93979 1.21103 1.00370 0.95266 0.95748 1.21345 0.95903 0.94071 1.00036 1.21423 0.98310 1.01384 0.92209 1.22030 0.98458 0.94055 1.00283 1.18885 1.00679 0.96132 0.93246 0.93069 0.91166 0.90837 0.95064 0.91338 0.92991 0.95495 0.93297 0.92282 0.91493 0.74679 0.80424 0.77735 0.82944 0.81886 0.83495 0.83434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.03 71.98 0.65 -1.94 16 2 C -0.10 -2.71 2.46 -10.72 -0.03 -2.73 16 3 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 4 C 0.15 5.33 5.80 86.36 0.50 5.83 16 5 N -0.62 -28.19 2.76 -699.07 -1.93 -30.12 16 6 C -0.24 -13.43 10.04 84.03 0.84 -12.59 16 7 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 8 C -0.03 -1.83 5.25 84.86 0.45 -1.39 16 9 N -0.95 -59.70 13.97 21.65 0.30 -59.40 16 10 Si 0.94 47.31 24.35 68.60 1.67 48.98 16 11 H -0.28 -13.80 6.73 99.48 0.67 -13.13 16 12 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 13 H -0.26 -12.70 6.40 99.48 0.64 -12.06 16 14 C 0.13 5.44 4.18 86.36 0.36 5.80 16 15 C -0.13 -4.58 5.65 30.67 0.17 -4.41 16 16 C 0.17 4.74 1.88 45.02 0.08 4.82 16 17 H 0.07 2.33 7.57 -2.39 -0.02 2.31 16 18 N -0.69 -15.09 4.32 -445.23 -1.92 -17.02 16 19 C 0.56 14.42 7.72 86.81 0.67 15.09 16 20 O -0.56 -18.52 13.18 -3.83 -0.05 -18.57 16 21 C -0.09 -2.02 5.94 -19.68 -0.12 -2.14 16 22 C -0.12 -1.68 9.60 22.68 0.22 -1.46 16 23 C 0.13 1.73 11.14 85.07 0.95 2.68 16 24 N -0.48 -9.54 10.30 -188.74 -1.94 -11.49 16 25 C 0.10 2.27 6.61 40.34 0.27 2.54 16 26 C -0.11 -1.91 9.99 22.37 0.22 -1.69 16 27 C -0.09 -1.44 9.94 22.03 0.22 -1.22 16 28 C -0.12 -2.18 9.96 22.07 0.22 -1.96 16 29 C -0.13 -3.27 9.25 22.26 0.21 -3.06 16 30 C -0.09 -2.15 5.76 -21.09 -0.12 -2.27 16 31 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.06 7.36 -2.39 -0.02 1.04 16 34 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 2.42 7.93 -2.39 -0.02 2.40 16 36 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 37 H 0.03 1.18 6.93 -2.39 -0.02 1.16 16 38 H 0.05 2.35 4.57 -2.39 -0.01 2.34 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.41 6.04 6.48 -92.71 -0.60 5.44 16 42 H 0.18 1.07 6.55 -2.91 -0.02 1.06 16 43 H 0.21 1.05 8.06 -2.92 -0.02 1.02 16 44 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 45 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 46 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 47 H 0.15 4.33 4.98 -2.91 -0.01 4.31 16 Total: -1.00 -75.61 369.12 2.18 -73.43 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.29 Total: 14.29 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 5.76 Total: -0.10 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -5.50 Total: -118.03 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.05 Total: -18.57 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.67 Total: 48.98 kcal Total: -75.61 2.18 -73.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942346104.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.159 kcal (2) G-P(sol) polarization free energy of solvation -75.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds