Wall clock time and date at job start Tue Mar 31 2020 22:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.50017 * 2 1 4 4 C 1.53194 * 109.49610 * 120.06428 * 2 1 3 5 5 N 1.46935 * 108.77396 * 174.55480 * 4 2 1 6 6 C 1.36934 * 120.60719 * 126.42026 * 5 4 2 7 7 H 1.07997 * 120.00207 * 331.92756 * 6 5 4 8 8 C 1.38812 * 120.00204 * 151.92511 * 6 5 4 9 9 N 1.31616 * 120.00320 * 160.60599 * 8 6 5 10 10 Si 1.86804 * 119.99915 * 340.61292 * 8 6 5 11 11 H 1.48502 * 109.47300 * 95.14731 * 10 8 6 12 12 H 1.48502 * 109.46937 * 215.15185 * 10 8 6 13 13 H 1.48508 * 109.46865 * 335.14760 * 10 8 6 14 14 C 1.46931 * 118.76304 * 306.44306 * 5 4 2 15 15 C 1.53198 * 108.77367 * 53.58885 * 14 5 4 16 16 C 1.53040 * 109.49944 * 239.93313 * 2 1 3 17 17 H 1.08998 * 109.45877 * 58.66623 * 16 2 1 18 18 N 1.46500 * 109.46223 * 298.69437 * 16 2 1 19 19 C 1.34773 * 120.00058 * 155.00181 * 18 16 2 20 20 O 1.21543 * 120.00117 * 359.97438 * 19 18 16 21 21 C 1.47906 * 119.99945 * 180.02562 * 19 18 16 22 22 C 1.38899 * 121.10750 * 354.59373 * 21 19 18 23 23 C 1.39280 * 119.57288 * 179.68585 * 22 21 19 24 24 N 1.30994 * 121.88299 * 0.66157 * 23 22 21 25 25 C 1.33533 * 121.82972 * 359.64002 * 24 23 22 26 26 C 1.40715 * 120.96841 * 180.02562 * 25 24 23 27 27 C 1.36058 * 119.73911 * 179.97438 * 26 25 24 28 28 C 1.39354 * 121.05271 * 359.95873 * 27 26 25 29 29 C 1.36239 * 120.84577 * 0.02562 * 28 27 26 30 30 C 1.40110 * 119.64030 * 359.97438 * 29 28 27 31 31 H 1.09000 * 109.47361 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47069 * 60.00201 * 1 2 3 33 33 H 1.09001 * 109.47543 * 299.99939 * 1 2 3 34 34 H 1.09001 * 109.58738 * 294.37031 * 4 2 1 35 35 H 1.09004 * 109.58729 * 54.79864 * 4 2 1 36 36 H 0.96998 * 120.00301 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.58935 * 293.80147 * 14 5 4 38 38 H 1.09000 * 109.58778 * 173.37298 * 14 5 4 39 39 H 1.08997 * 109.49560 * 185.41259 * 15 14 5 40 40 H 1.09002 * 109.52253 * 65.33197 * 15 14 5 41 41 H 0.97004 * 119.99622 * 334.99826 * 18 16 2 42 42 H 1.07995 * 120.21162 * 0.02562 * 22 21 19 43 43 H 1.07998 * 119.05263 * 180.28264 * 23 22 21 44 44 H 1.07997 * 120.12745 * 0.02562 * 26 25 24 45 45 H 1.07997 * 119.46829 * 179.97438 * 27 26 25 46 46 H 1.08002 * 119.57646 * 179.97438 * 28 27 26 47 47 H 1.07994 * 120.18217 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7235 1.2498 5 7 3.5045 -0.8295 1.1695 6 6 4.2935 -0.3795 2.1943 7 1 3.9494 0.4248 2.8276 8 6 5.5355 -0.9572 2.4192 9 7 6.4436 -0.3129 3.1210 10 14 5.9182 -2.6489 1.7255 11 1 6.6196 -2.5035 0.4247 12 1 6.7865 -3.3888 2.6762 13 1 4.6525 -3.3992 1.5243 14 6 4.1053 -1.4268 -0.0310 15 6 3.5709 -0.6947 -1.2661 16 6 2.0408 -0.7228 -1.2485 17 1 1.6582 -0.2239 -2.1389 18 7 1.5785 -2.1128 -1.2312 19 6 1.4505 -2.7948 -2.3866 20 8 1.7181 -2.2565 -3.4430 21 6 0.9833 -4.1980 -2.3692 22 6 0.7765 -4.8707 -1.1717 23 6 0.3298 -6.1898 -1.1925 24 7 0.1080 -6.8275 -2.3150 25 6 0.2910 -6.2463 -3.5032 26 6 0.0466 -6.9484 -4.6980 27 6 0.2408 -6.3316 -5.8951 28 6 0.6788 -5.0102 -5.9602 29 6 0.9253 -4.2993 -4.8244 30 6 0.7359 -4.9029 -3.5743 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5138 0.8900 34 1 1.7637 -0.1573 2.1390 35 1 1.6051 -1.7213 1.2985 36 1 7.3116 -0.7164 3.2779 37 1 3.8375 -2.4818 -0.0874 38 1 5.1895 -1.3247 0.0135 39 1 3.9334 -1.1891 -2.1673 40 1 3.9160 0.3392 -1.2544 41 1 1.3647 -2.5424 -0.3882 42 1 0.9558 -4.3724 -0.2305 43 1 0.1674 -6.7033 -0.2564 44 1 -0.2947 -7.9725 -4.6649 45 1 0.0523 -6.8746 -6.8093 46 1 0.8255 -4.5441 -6.9233 47 1 1.2648 -3.2760 -4.8874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942346107.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:56 Heat of formation + Delta-G solvation = 31.477021 kcal Electronic energy + Delta-G solvation = -29886.319127 eV Core-core repulsion = 26033.916302 eV Total energy + Delta-G solvation = -3852.402825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.25097 -41.04471 -39.29527 -38.10553 -36.16953 -34.69635 -33.99388 -33.40556 -32.13335 -31.54925 -30.80042 -27.81135 -27.23803 -26.01976 -24.60347 -24.09616 -23.40585 -23.18017 -21.95513 -20.40319 -19.35492 -18.88665 -18.64234 -18.23233 -17.37741 -16.83495 -16.61139 -16.42709 -15.97333 -15.88797 -15.58347 -15.47775 -15.23712 -15.00618 -14.87211 -14.82123 -14.41161 -14.23896 -14.08047 -13.84049 -13.47252 -13.21710 -12.94510 -12.82033 -12.80997 -12.63753 -12.34903 -12.27005 -12.11256 -11.92141 -11.69313 -11.58157 -11.45368 -11.40801 -11.28061 -10.75265 -10.37935 -10.16340 -9.83823 -9.31085 -8.92070 -8.17169 -5.49767 -0.98809 -0.25517 0.65055 1.28946 1.37457 1.45886 1.70385 1.93257 2.07090 2.39851 3.03474 3.06608 3.25146 3.31747 3.39947 3.58886 3.66181 3.71187 3.83781 3.90144 4.05174 4.14722 4.19751 4.21077 4.38018 4.39232 4.51285 4.51499 4.53760 4.59401 4.71603 4.74387 4.84377 4.89447 4.93409 4.99589 5.04099 5.07686 5.16259 5.20880 5.29826 5.32815 5.38476 5.47376 5.50497 5.58499 5.86693 5.86955 6.13275 6.36707 6.76759 6.90463 7.02703 7.61327 8.01471 9.02594 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014586 B = 0.003460 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.157682 B = 8089.989171 C = 8700.827685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 H 0.079 0.921 4 C 0.149 3.851 5 N -0.616 5.616 6 C -0.242 4.242 7 H 0.057 0.943 8 C -0.033 4.033 9 N -0.958 5.958 10 Si 0.941 3.059 11 H -0.291 1.291 12 H -0.313 1.313 13 H -0.249 1.249 14 C 0.129 3.871 15 C -0.140 4.140 16 C 0.168 3.832 17 H 0.089 0.911 18 N -0.696 5.696 19 C 0.561 3.439 20 O -0.555 6.555 21 C -0.091 4.091 22 C -0.128 4.128 23 C 0.125 3.875 24 N -0.474 5.474 25 C 0.100 3.900 26 C -0.107 4.107 27 C -0.092 4.092 28 C -0.113 4.113 29 C -0.127 4.127 30 C -0.085 4.085 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.260 0.740 37 H 0.033 0.967 38 H 0.041 0.959 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.408 0.592 42 H 0.165 0.835 43 H 0.201 0.799 44 H 0.152 0.848 45 H 0.165 0.835 46 H 0.152 0.848 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.771 -11.032 -14.968 25.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.129 4.129 3 H 0.097 0.903 4 C 0.024 3.976 5 N -0.340 5.340 6 C -0.371 4.371 7 H 0.075 0.925 8 C -0.228 4.228 9 N -0.604 5.604 10 Si 0.771 3.229 11 H -0.219 1.219 12 H -0.243 1.243 13 H -0.173 1.173 14 C 0.004 3.996 15 C -0.180 4.180 16 C 0.063 3.937 17 H 0.107 0.893 18 N -0.348 5.348 19 C 0.348 3.652 20 O -0.435 6.435 21 C -0.102 4.102 22 C -0.149 4.149 23 C -0.047 4.047 24 N -0.183 5.183 25 C -0.021 4.021 26 C -0.126 4.126 27 C -0.111 4.111 28 C -0.131 4.131 29 C -0.145 4.145 30 C -0.087 4.087 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.247 0.753 42 H 0.182 0.818 43 H 0.218 0.782 44 H 0.170 0.830 45 H 0.183 0.817 46 H 0.169 0.831 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.750 -11.498 -15.700 26.339 hybrid contribution 1.369 0.265 0.581 1.511 sum -16.381 -11.233 -15.119 24.962 Atomic orbital electron populations 1.21708 0.92462 1.02517 1.02582 1.21813 0.97131 0.99937 0.93999 0.90266 1.21187 0.81606 0.98115 0.96647 1.44442 1.02370 1.72018 1.15149 1.18866 0.98385 1.11904 1.07978 0.92497 1.25866 0.96818 1.01130 0.98979 1.69945 1.05552 1.38920 1.46004 0.86000 0.78082 0.82876 0.75948 1.21880 1.24263 1.17298 1.21238 0.96355 0.95302 0.86717 1.22304 0.96611 1.01588 0.97544 1.20846 0.92550 0.80881 0.99389 0.89301 1.45981 1.66066 1.14048 1.08719 1.18222 0.77330 0.85589 0.84027 1.90566 1.51910 1.70179 1.30836 1.20412 1.01201 0.94015 0.94576 1.22782 0.97110 0.96697 0.98298 1.23512 0.92520 0.91169 0.97485 1.67861 1.14285 1.37791 0.98316 1.19238 0.98840 0.90560 0.93439 1.21096 1.00528 1.01018 0.89934 1.21366 0.96333 0.94656 0.98787 1.21446 0.97521 0.94827 0.99263 1.22042 0.98436 1.02662 0.91408 1.18872 1.00871 0.94769 0.94206 0.91971 0.92076 0.91326 0.91750 0.93933 0.93097 0.94950 0.94105 0.92136 0.91149 0.75321 0.81804 0.78198 0.83023 0.81708 0.83060 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.05 71.98 0.65 -1.97 16 2 C -0.11 -2.85 2.67 -10.72 -0.03 -2.88 16 3 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 4 C 0.15 4.80 5.50 86.36 0.48 5.28 16 5 N -0.62 -26.45 2.76 -699.05 -1.93 -28.38 16 6 C -0.24 -13.02 10.04 84.03 0.84 -12.17 16 7 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 8 C -0.03 -1.90 5.25 84.86 0.45 -1.45 16 9 N -0.96 -59.49 13.97 21.65 0.30 -59.19 16 10 Si 0.94 45.87 24.35 68.60 1.67 47.54 16 11 H -0.29 -14.07 6.73 99.48 0.67 -13.40 16 12 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 13 H -0.25 -11.08 6.40 99.48 0.64 -10.45 16 14 C 0.13 5.25 3.92 86.36 0.34 5.59 16 15 C -0.14 -4.79 5.77 30.68 0.18 -4.61 16 16 C 0.17 4.66 2.21 45.02 0.10 4.76 16 17 H 0.09 2.45 7.58 -2.39 -0.02 2.44 16 18 N -0.70 -17.55 3.55 -445.23 -1.58 -19.13 16 19 C 0.56 15.56 7.72 86.80 0.67 16.23 16 20 O -0.55 -18.04 13.18 -3.85 -0.05 -18.09 16 21 C -0.09 -2.29 5.94 -19.68 -0.12 -2.41 16 22 C -0.13 -2.51 9.60 22.68 0.22 -2.30 16 23 C 0.13 2.31 11.14 85.07 0.95 3.26 16 24 N -0.47 -10.96 10.30 -188.73 -1.94 -12.91 16 25 C 0.10 2.45 6.61 40.35 0.27 2.71 16 26 C -0.11 -2.04 9.98 22.37 0.22 -1.82 16 27 C -0.09 -1.42 9.94 22.03 0.22 -1.20 16 28 C -0.11 -2.08 9.96 22.07 0.22 -1.86 16 29 C -0.13 -3.19 9.25 22.26 0.21 -2.99 16 30 C -0.08 -2.22 5.76 -21.09 -0.12 -2.34 16 31 H 0.06 1.08 7.53 -2.39 -0.02 1.07 16 32 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 2.14 7.93 -2.39 -0.02 2.12 16 35 H 0.04 1.18 6.64 -2.39 -0.02 1.17 16 36 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.03 1.27 6.53 -2.39 -0.02 1.26 16 38 H 0.04 1.92 4.56 -2.39 -0.01 1.91 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.41 8.96 4.90 -92.71 -0.45 8.50 16 42 H 0.16 2.38 6.55 -2.91 -0.02 2.36 16 43 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 44 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 45 H 0.17 1.31 8.06 -2.91 -0.02 1.28 16 46 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 47 H 0.15 4.30 4.98 -2.92 -0.01 4.29 16 Total: -1.00 -72.02 365.17 2.64 -69.38 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.44 Total: 20.96 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 5.73 Total: -0.18 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -5.16 Total: -119.61 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.05 Total: -18.09 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.67 Total: 47.54 kcal Total: -72.02 2.64 -69.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942346107.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.860 kcal (2) G-P(sol) polarization free energy of solvation -72.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds