Wall clock time and date at job start Tue Mar 31 2020 22:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.52589 * 2 1 4 4 C 1.53189 * 109.49985 * 120.08001 * 2 1 3 5 5 N 1.46929 * 108.77423 * 174.58292 * 4 2 1 6 6 C 1.36938 * 120.62462 * 126.37214 * 5 4 2 7 7 H 1.07996 * 120.00660 * 329.19600 * 6 5 4 8 8 C 1.38813 * 119.99619 * 149.20138 * 6 5 4 9 9 N 1.31625 * 120.00209 * 350.09767 * 8 6 5 10 10 Si 1.86803 * 119.99916 * 170.37364 * 8 6 5 11 11 H 1.48502 * 109.47057 * 90.00013 * 10 8 6 12 12 H 1.48497 * 109.46936 * 209.99462 * 10 8 6 13 13 H 1.48491 * 109.47030 * 330.00031 * 10 8 6 14 14 C 1.46919 * 118.73921 * 306.64526 * 5 4 2 15 15 C 1.52766 * 109.01088 * 53.31084 * 14 5 4 16 16 C 1.53041 * 109.49294 * 239.92196 * 2 1 3 17 17 H 1.09000 * 109.45774 * 298.69789 * 16 2 1 18 18 N 1.46497 * 109.46249 * 58.66110 * 16 2 1 19 19 C 1.34772 * 120.00069 * 204.99858 * 18 16 2 20 20 O 1.21550 * 119.99896 * 359.97438 * 19 18 16 21 21 C 1.47951 * 120.00392 * 179.97438 * 19 18 16 22 22 N 1.32201 * 120.15455 * 5.74172 * 21 19 18 23 23 C 1.32026 * 122.67991 * 180.02562 * 22 21 19 24 24 C 1.36686 * 122.02988 * 359.97438 * 23 22 21 25 25 C 1.40530 * 118.84985 * 359.97438 * 24 23 22 26 26 C 1.40317 * 122.22839 * 180.02562 * 25 24 23 27 27 C 1.36211 * 119.45125 * 179.12341 * 26 25 24 28 28 C 1.39380 * 121.00020 * 0.88144 * 27 26 25 29 29 C 1.36252 * 121.08466 * 359.39054 * 28 27 26 30 30 C 1.40095 * 119.53425 * 0.02562 * 29 28 27 31 31 H 1.09002 * 109.47200 * 299.91890 * 1 2 3 32 32 H 1.08998 * 109.47205 * 59.91711 * 1 2 3 33 33 H 1.09004 * 109.47315 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.58487 * 54.80150 * 4 2 1 35 35 H 1.08994 * 109.70347 * 294.44712 * 4 2 1 36 36 H 0.96995 * 120.00072 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.58857 * 173.14579 * 14 5 4 38 38 H 1.09000 * 109.58707 * 293.56854 * 14 5 4 39 39 H 1.08994 * 109.56588 * 185.54921 * 15 14 5 40 40 H 1.09001 * 109.38414 * 65.50786 * 15 14 5 41 41 H 0.97001 * 120.00278 * 25.00322 * 18 16 2 42 42 H 1.07997 * 118.98465 * 179.97438 * 23 22 21 43 43 H 1.08003 * 120.57367 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.27234 * 359.95236 * 26 25 24 45 45 H 1.08004 * 119.49851 * 180.29308 * 27 26 25 46 46 H 1.08004 * 119.45874 * 179.41278 * 28 27 26 47 47 H 1.08002 * 120.23720 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5047 -0.8291 1.1694 6 6 4.2936 -0.3785 2.1939 7 1 3.9690 0.4549 2.7993 8 6 5.5109 -0.9928 2.4544 9 7 5.8205 -2.1216 1.8524 10 14 6.7063 -0.2214 3.6649 11 1 6.4342 -0.7416 5.0290 12 1 8.0972 -0.5635 3.2731 13 1 6.5378 1.2539 3.6551 14 6 4.1055 -1.4216 -0.0333 15 6 3.5708 -0.6950 -1.2662 16 6 2.0407 -0.7230 -1.2484 17 1 1.6966 -1.7572 -1.2353 18 7 1.5264 -0.0529 -2.4453 19 6 1.3983 -0.7382 -3.5987 20 8 1.7099 -1.9121 -3.6460 21 6 0.8783 -0.0616 -4.8074 22 7 0.6455 1.2397 -4.7917 23 6 0.1815 1.8935 -5.8407 24 6 -0.0916 1.2656 -7.0237 25 6 0.1299 -0.1185 -7.1237 26 6 -0.1254 -0.8339 -8.3035 27 6 0.1267 -2.1719 -8.3432 28 6 0.6169 -2.8436 -7.2247 29 6 0.8706 -2.1810 -6.0614 30 6 0.6349 -0.8021 -5.9865 31 1 -0.3634 0.5126 0.8907 32 1 -0.3633 0.5151 -0.8892 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6053 -1.7216 1.2980 35 1 1.7637 -0.1601 2.1402 36 1 6.6709 -2.5511 2.0347 37 1 5.1895 -1.3160 0.0098 38 1 3.8412 -2.4774 -0.0916 39 1 3.9333 -1.1896 -2.1672 40 1 3.9158 0.3389 -1.2548 41 1 1.2780 0.8840 -2.4077 42 1 0.0125 2.9572 -5.7616 43 1 -0.4710 1.8236 -7.8670 44 1 -0.5060 -0.3254 -9.1770 45 1 -0.0651 -2.7224 -9.2524 46 1 0.7991 -3.9067 -7.2810 47 1 1.2508 -2.7151 -5.2031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942587708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:58 Heat of formation + Delta-G solvation = 41.972561 kcal Electronic energy + Delta-G solvation = -29118.977516 eV Core-core repulsion = 25267.029811 eV Total energy + Delta-G solvation = -3851.947705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.30968 -39.51856 -37.66560 -37.55261 -34.56786 -33.21504 -32.63362 -31.39055 -31.17693 -30.25863 -29.44040 -25.98733 -25.63915 -24.53971 -23.75681 -23.02826 -22.01007 -20.92345 -20.54262 -19.41376 -18.22337 -17.63647 -17.28704 -16.64962 -16.09850 -15.87006 -15.25488 -14.96314 -14.77958 -14.62359 -14.05022 -13.97634 -13.83906 -13.64882 -13.39273 -13.27579 -13.05481 -12.75381 -12.60307 -12.37096 -12.06766 -12.04549 -11.67311 -11.43588 -11.29082 -10.97098 -10.80748 -10.61752 -10.41943 -10.30045 -10.20461 -10.12955 -9.95847 -9.77957 -9.65942 -9.37505 -9.34976 -8.71894 -8.43256 -8.28588 -6.60568 -5.75342 -3.23705 -0.15372 0.63334 1.51698 2.54205 3.12350 3.15712 3.39037 3.45504 3.47186 3.90622 4.00296 4.30029 4.50246 4.51761 4.53566 4.63723 4.85795 4.96696 5.05879 5.15012 5.21073 5.36254 5.43479 5.46578 5.55092 5.57324 5.64139 5.77478 5.85181 5.92912 6.02444 6.10635 6.14479 6.23899 6.28216 6.30974 6.34223 6.47123 6.49628 6.61927 6.67783 6.71781 6.82034 6.95851 7.00040 7.42657 7.44939 7.73995 7.77763 7.81568 8.31823 8.50308 9.24773 9.86178 10.43823 11.32595 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020471 B = 0.002528 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.456243 B =11072.877494 C =11549.505230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.072 0.928 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.253 4.253 7 H 0.064 0.936 8 C 0.004 3.996 9 N -0.904 5.904 10 Si 0.905 3.095 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.174 3.826 15 C -0.148 4.148 16 C 0.154 3.846 17 H 0.085 0.915 18 N -0.694 5.694 19 C 0.568 3.432 20 O -0.529 6.529 21 C 0.131 3.869 22 N -0.458 5.458 23 C 0.074 3.926 24 C -0.136 4.136 25 C -0.031 4.031 26 C -0.123 4.123 27 C -0.093 4.093 28 C -0.126 4.126 29 C -0.087 4.087 30 C -0.074 4.074 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.058 0.942 36 H 0.254 0.746 37 H 0.093 0.907 38 H 0.020 0.980 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.406 0.594 42 H 0.160 0.840 43 H 0.141 0.859 44 H 0.131 0.869 45 H 0.126 0.874 46 H 0.129 0.871 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.339 4.945 -20.309 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 H 0.090 0.910 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.383 4.383 7 H 0.082 0.918 8 C -0.195 4.195 9 N -0.548 5.548 10 Si 0.734 3.266 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.048 3.952 15 C -0.188 4.188 16 C 0.051 3.949 17 H 0.103 0.897 18 N -0.343 5.343 19 C 0.352 3.648 20 O -0.407 6.407 21 C -0.021 4.021 22 N -0.170 5.170 23 C -0.072 4.072 24 C -0.156 4.156 25 C -0.036 4.036 26 C -0.141 4.141 27 C -0.112 4.112 28 C -0.144 4.144 29 C -0.106 4.106 30 C -0.077 4.077 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.111 0.889 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.242 0.758 42 H 0.177 0.823 43 H 0.159 0.841 44 H 0.149 0.851 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -13.803 4.576 -19.533 24.352 hybrid contribution 0.325 0.526 -0.417 0.746 sum -13.478 5.102 -19.950 24.611 Atomic orbital electron populations 1.21782 0.95783 1.01557 1.00959 1.21975 0.94549 1.00690 0.96342 0.90961 1.20900 0.86008 0.96598 0.93682 1.44052 0.99215 1.71668 1.16582 1.19161 1.00307 1.09884 1.08900 0.91796 1.25165 1.00016 0.95538 0.98772 1.69970 1.23128 1.16650 1.45087 0.86267 0.80505 0.78794 0.81003 1.21363 1.21606 1.20501 1.20705 0.99650 0.93066 0.81796 1.22540 0.93576 1.01735 1.00984 1.21189 0.94800 0.96920 0.81958 0.89721 1.46190 1.63410 1.14923 1.09759 1.17724 0.78503 0.85987 0.82565 1.90594 1.50926 1.15477 1.83661 1.21551 0.97102 0.89799 0.93676 1.67289 1.10138 1.08558 1.31023 1.22187 0.96346 1.00383 0.88274 1.22121 1.00044 0.93807 0.99641 1.18205 0.97698 0.93777 0.93900 1.20907 1.01843 0.94668 0.96668 1.21088 0.96853 0.94587 0.98654 1.21142 0.99473 1.00739 0.93009 1.22266 0.95197 0.92962 1.00197 1.18729 1.00398 0.95380 0.93144 0.92697 0.93371 0.92907 0.96153 0.92360 0.93570 0.88922 0.96193 0.92723 0.92605 0.75821 0.82307 0.84107 0.85094 0.85573 0.85328 0.80768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.02 37.16 0.34 -1.64 16 2 C -0.11 -1.94 2.46 -90.50 -0.22 -2.16 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.16 3.20 5.80 -3.71 -0.02 3.18 16 5 N -0.59 -14.80 3.00 -172.58 -0.52 -15.32 16 6 C -0.25 -6.90 9.59 -15.06 -0.14 -7.04 16 7 H 0.06 1.70 7.85 -52.49 -0.41 1.29 16 8 C 0.00 0.10 5.07 -17.43 -0.09 0.01 16 9 N -0.90 -26.35 10.98 55.49 0.61 -25.74 16 10 Si 0.90 21.72 29.56 -169.99 -5.03 16.69 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.17 4.24 5.23 -3.93 -0.02 4.22 16 15 C -0.15 -2.99 5.64 -26.83 -0.15 -3.14 16 16 C 0.15 2.72 1.88 -67.89 -0.13 2.59 16 17 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 18 N -0.69 -10.61 4.36 -54.67 -0.24 -10.85 16 19 C 0.57 9.06 7.74 -12.28 -0.10 8.96 16 20 O -0.53 -9.54 13.10 5.32 0.07 -9.47 16 21 C 0.13 1.84 6.81 -82.55 -0.56 1.28 16 22 N -0.46 -5.76 9.52 -9.81 -0.09 -5.85 16 23 C 0.07 0.71 11.06 -18.03 -0.20 0.51 16 24 C -0.14 -1.18 9.88 -39.28 -0.39 -1.56 16 25 C -0.03 -0.33 5.75 -106.83 -0.61 -0.94 16 26 C -0.12 -1.04 9.82 -39.53 -0.39 -1.43 16 27 C -0.09 -0.76 9.95 -39.89 -0.40 -1.16 16 28 C -0.13 -1.25 9.95 -39.87 -0.40 -1.64 16 29 C -0.09 -1.11 9.23 -39.60 -0.37 -1.48 16 30 C -0.07 -0.97 5.76 -106.59 -0.61 -1.58 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.61 7.36 -51.93 -0.38 0.23 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 36 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.09 2.53 6.05 -51.93 -0.31 2.22 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.41 5.59 7.67 -40.82 -0.31 5.28 16 42 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 43 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 44 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 45 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 46 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 47 H 0.18 2.51 4.96 -52.49 -0.26 2.25 16 LS Contribution 377.48 15.07 5.69 5.69 Total: -1.00 -31.41 377.48 -10.66 -42.08 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.70 Total: 5.80 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -4.46 Total: -3.02 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.24 Total: -57.76 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.07 Total: -9.47 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.41 -10.66 -42.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942587708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.050 kcal (2) G-P(sol) polarization free energy of solvation -31.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds