Wall clock time and date at job start Tue Mar 31 2020 22:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.52589 * 2 1 4 4 C 1.53189 * 109.49985 * 120.08001 * 2 1 3 5 5 N 1.46929 * 108.77423 * 174.58292 * 4 2 1 6 6 C 1.36938 * 120.62462 * 126.37214 * 5 4 2 7 7 H 1.07996 * 120.00660 * 329.19600 * 6 5 4 8 8 C 1.38813 * 119.99619 * 149.20138 * 6 5 4 9 9 N 1.31625 * 120.00209 * 350.09767 * 8 6 5 10 10 Si 1.86803 * 119.99916 * 170.37364 * 8 6 5 11 11 H 1.48502 * 109.47057 * 90.00013 * 10 8 6 12 12 H 1.48497 * 109.46936 * 209.99462 * 10 8 6 13 13 H 1.48491 * 109.47030 * 330.00031 * 10 8 6 14 14 C 1.46919 * 118.73921 * 306.64526 * 5 4 2 15 15 C 1.52766 * 109.01088 * 53.31084 * 14 5 4 16 16 C 1.53041 * 109.49294 * 239.92196 * 2 1 3 17 17 H 1.09000 * 109.45774 * 298.69789 * 16 2 1 18 18 N 1.46497 * 109.46249 * 58.66110 * 16 2 1 19 19 C 1.34772 * 120.00069 * 204.99858 * 18 16 2 20 20 O 1.21550 * 119.99896 * 359.97438 * 19 18 16 21 21 C 1.47951 * 120.00392 * 179.97438 * 19 18 16 22 22 N 1.32201 * 120.15455 * 5.74172 * 21 19 18 23 23 C 1.32026 * 122.67991 * 180.02562 * 22 21 19 24 24 C 1.36686 * 122.02988 * 359.97438 * 23 22 21 25 25 C 1.40530 * 118.84985 * 359.97438 * 24 23 22 26 26 C 1.40317 * 122.22839 * 180.02562 * 25 24 23 27 27 C 1.36211 * 119.45125 * 179.12341 * 26 25 24 28 28 C 1.39380 * 121.00020 * 0.88144 * 27 26 25 29 29 C 1.36252 * 121.08466 * 359.39054 * 28 27 26 30 30 C 1.40095 * 119.53425 * 0.02562 * 29 28 27 31 31 H 1.09002 * 109.47200 * 299.91890 * 1 2 3 32 32 H 1.08998 * 109.47205 * 59.91711 * 1 2 3 33 33 H 1.09004 * 109.47315 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.58487 * 54.80150 * 4 2 1 35 35 H 1.08994 * 109.70347 * 294.44712 * 4 2 1 36 36 H 0.96995 * 120.00072 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.58857 * 173.14579 * 14 5 4 38 38 H 1.09000 * 109.58707 * 293.56854 * 14 5 4 39 39 H 1.08994 * 109.56588 * 185.54921 * 15 14 5 40 40 H 1.09001 * 109.38414 * 65.50786 * 15 14 5 41 41 H 0.97001 * 120.00278 * 25.00322 * 18 16 2 42 42 H 1.07997 * 118.98465 * 179.97438 * 23 22 21 43 43 H 1.08003 * 120.57367 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.27234 * 359.95236 * 26 25 24 45 45 H 1.08004 * 119.49851 * 180.29308 * 27 26 25 46 46 H 1.08004 * 119.45874 * 179.41278 * 28 27 26 47 47 H 1.08002 * 120.23720 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5047 -0.8291 1.1694 6 6 4.2936 -0.3785 2.1939 7 1 3.9690 0.4549 2.7993 8 6 5.5109 -0.9928 2.4544 9 7 5.8205 -2.1216 1.8524 10 14 6.7063 -0.2214 3.6649 11 1 6.4342 -0.7416 5.0290 12 1 8.0972 -0.5635 3.2731 13 1 6.5378 1.2539 3.6551 14 6 4.1055 -1.4216 -0.0333 15 6 3.5708 -0.6950 -1.2662 16 6 2.0407 -0.7230 -1.2484 17 1 1.6966 -1.7572 -1.2353 18 7 1.5264 -0.0529 -2.4453 19 6 1.3983 -0.7382 -3.5987 20 8 1.7099 -1.9121 -3.6460 21 6 0.8783 -0.0616 -4.8074 22 7 0.6455 1.2397 -4.7917 23 6 0.1815 1.8935 -5.8407 24 6 -0.0916 1.2656 -7.0237 25 6 0.1299 -0.1185 -7.1237 26 6 -0.1254 -0.8339 -8.3035 27 6 0.1267 -2.1719 -8.3432 28 6 0.6169 -2.8436 -7.2247 29 6 0.8706 -2.1810 -6.0614 30 6 0.6349 -0.8021 -5.9865 31 1 -0.3634 0.5126 0.8907 32 1 -0.3633 0.5151 -0.8892 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6053 -1.7216 1.2980 35 1 1.7637 -0.1601 2.1402 36 1 6.6709 -2.5511 2.0347 37 1 5.1895 -1.3160 0.0098 38 1 3.8412 -2.4774 -0.0916 39 1 3.9333 -1.1896 -2.1672 40 1 3.9158 0.3389 -1.2548 41 1 1.2780 0.8840 -2.4077 42 1 0.0125 2.9572 -5.7616 43 1 -0.4710 1.8236 -7.8670 44 1 -0.5060 -0.3254 -9.1770 45 1 -0.0651 -2.7224 -9.2524 46 1 0.7991 -3.9067 -7.2810 47 1 1.2508 -2.7151 -5.2031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942587708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:57 Heat of formation + Delta-G solvation = 23.465812 kcal Electronic energy + Delta-G solvation = -29119.780028 eV Core-core repulsion = 25267.029811 eV Total energy + Delta-G solvation = -3852.750217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.19298 -40.77580 -39.15094 -38.36730 -36.24925 -34.31681 -33.91709 -32.95752 -32.16896 -31.75466 -30.52196 -27.42599 -27.24868 -25.82348 -24.51723 -24.18371 -23.33612 -22.62503 -21.76957 -20.95108 -19.24192 -18.74148 -18.40084 -18.09801 -17.30765 -16.81531 -16.73425 -16.35943 -15.98052 -15.60904 -15.52207 -15.38115 -15.07183 -14.72826 -14.67073 -14.49788 -14.41752 -14.14756 -13.87959 -13.58265 -13.15029 -13.06902 -12.96420 -12.75515 -12.73511 -12.64367 -12.47026 -12.29133 -12.08181 -12.04810 -11.67385 -11.59899 -11.28361 -11.19125 -11.06285 -10.58841 -10.48131 -10.14742 -10.06332 -9.06527 -8.66147 -7.86407 -5.38480 -0.98004 -0.12142 0.69826 1.47388 1.48284 1.58076 1.62207 1.97392 2.21065 2.50720 3.05512 3.09492 3.30342 3.59172 3.63157 3.70084 3.74194 3.81548 3.90785 4.01003 4.14013 4.20292 4.28050 4.35937 4.42452 4.47762 4.59080 4.69017 4.72582 4.74313 4.82055 4.84918 4.89878 4.99747 5.04857 5.10211 5.11797 5.15101 5.27821 5.37971 5.40223 5.45245 5.50914 5.56596 5.63309 5.65265 5.71011 5.90679 6.38092 6.40557 6.77289 7.12472 7.14200 7.83105 8.37139 9.20012 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020471 B = 0.002528 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.456243 B =11072.877494 C =11549.505230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 H 0.077 0.923 4 C 0.151 3.849 5 N -0.610 5.610 6 C -0.262 4.262 7 H 0.072 0.928 8 C -0.053 4.053 9 N -0.939 5.939 10 Si 0.972 3.028 11 H -0.283 1.283 12 H -0.295 1.295 13 H -0.267 1.267 14 C 0.185 3.815 15 C -0.133 4.133 16 C 0.168 3.832 17 H 0.064 0.936 18 N -0.686 5.686 19 C 0.565 3.435 20 O -0.561 6.561 21 C 0.092 3.908 22 N -0.464 5.464 23 C 0.054 3.946 24 C -0.106 4.106 25 C -0.053 4.053 26 C -0.108 4.108 27 C -0.100 4.100 28 C -0.115 4.115 29 C -0.131 4.131 30 C -0.088 4.088 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.013 0.987 35 H 0.067 0.933 36 H 0.249 0.751 37 H 0.059 0.941 38 H -0.009 1.009 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.416 0.584 42 H 0.194 0.806 43 H 0.187 0.813 44 H 0.172 0.828 45 H 0.162 0.838 46 H 0.143 0.857 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.713 7.742 -23.075 29.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 H 0.095 0.905 4 C 0.026 3.974 5 N -0.333 5.333 6 C -0.392 4.392 7 H 0.090 0.910 8 C -0.248 4.248 9 N -0.585 5.585 10 Si 0.800 3.200 11 H -0.210 1.210 12 H -0.221 1.221 13 H -0.192 1.192 14 C 0.059 3.941 15 C -0.173 4.173 16 C 0.063 3.937 17 H 0.082 0.918 18 N -0.336 5.336 19 C 0.351 3.649 20 O -0.440 6.440 21 C -0.058 4.058 22 N -0.176 5.176 23 C -0.092 4.092 24 C -0.125 4.125 25 C -0.058 4.058 26 C -0.125 4.125 27 C -0.119 4.119 28 C -0.133 4.133 29 C -0.150 4.150 30 C -0.091 4.091 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.031 0.969 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.009 0.991 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.253 0.747 42 H 0.211 0.789 43 H 0.204 0.796 44 H 0.189 0.811 45 H 0.180 0.820 46 H 0.161 0.839 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.217 7.397 -22.300 28.548 hybrid contribution 0.977 -0.353 0.268 1.073 sum -15.239 7.045 -22.032 27.699 Atomic orbital electron populations 1.21706 0.92832 1.01917 1.02677 1.21772 0.96812 0.99839 0.93670 0.90489 1.21070 0.83519 0.96838 0.96021 1.44286 1.01048 1.71648 1.16315 1.19548 1.00761 1.09876 1.08989 0.91050 1.25982 1.01904 0.96098 1.00827 1.70160 1.23310 1.18225 1.46831 0.85202 0.77743 0.78450 0.78610 1.20999 1.22139 1.19173 1.20380 0.97853 0.92095 0.83798 1.22283 0.95771 1.00801 0.98427 1.20796 0.92725 0.96433 0.83715 0.91822 1.45919 1.63541 1.15197 1.08936 1.18175 0.77723 0.85727 0.83250 1.90595 1.52102 1.16959 1.84326 1.21102 1.00729 0.90725 0.93231 1.67205 1.09813 1.07829 1.32729 1.22824 0.96479 1.01855 0.88071 1.22646 0.96611 0.92900 1.00369 1.18599 0.98299 0.95043 0.93898 1.21408 0.99647 0.94695 0.96773 1.21471 0.96278 0.95061 0.99057 1.21433 0.97623 1.01577 0.92634 1.22060 0.98630 0.93576 1.00769 1.18900 1.00756 0.95532 0.93888 0.90870 0.91712 0.93277 0.96927 0.91488 0.94137 0.92258 0.99115 0.93454 0.92422 0.74659 0.78948 0.79553 0.81068 0.82033 0.83923 0.83749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 9.02 71.98 0.65 -2.85 16 2 C -0.10 -3.37 2.46 -10.72 -0.03 -3.40 16 3 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 4 C 0.15 6.34 5.80 86.36 0.50 6.84 16 5 N -0.61 -31.56 3.00 -699.93 -2.10 -33.65 16 6 C -0.26 -14.56 9.59 84.03 0.81 -13.76 16 7 H 0.07 3.80 7.85 -2.91 -0.02 3.78 16 8 C -0.05 -3.03 5.07 84.86 0.43 -2.60 16 9 N -0.94 -57.30 10.98 21.65 0.24 -57.06 16 10 Si 0.97 45.55 29.56 68.60 2.03 47.58 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 14 C 0.19 9.65 5.23 86.22 0.45 10.10 16 15 C -0.13 -5.67 5.64 30.53 0.17 -5.50 16 16 C 0.17 6.15 1.88 45.02 0.08 6.24 16 17 H 0.06 2.63 7.58 -2.39 -0.02 2.61 16 18 N -0.69 -21.58 4.36 -445.17 -1.94 -23.52 16 19 C 0.57 19.09 7.74 86.82 0.67 19.77 16 20 O -0.56 -22.12 13.10 -3.87 -0.05 -22.17 16 21 C 0.09 2.65 6.81 42.43 0.29 2.94 16 22 N -0.46 -11.16 9.52 -184.95 -1.76 -12.92 16 23 C 0.05 0.88 11.06 84.30 0.93 1.81 16 24 C -0.11 -1.37 9.88 22.47 0.22 -1.15 16 25 C -0.05 -0.98 5.75 -21.29 -0.12 -1.11 16 26 C -0.11 -1.36 9.82 22.30 0.22 -1.14 16 27 C -0.10 -1.32 9.95 22.07 0.22 -1.10 16 28 C -0.11 -2.21 9.95 22.08 0.22 -1.99 16 29 C -0.13 -3.53 9.23 22.26 0.21 -3.33 16 30 C -0.09 -2.31 5.76 -21.14 -0.12 -2.43 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.51 7.36 -2.39 -0.02 1.49 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 36 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 37 H 0.06 3.47 6.05 -2.39 -0.01 3.45 16 38 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.42 11.35 7.67 -92.71 -0.71 10.63 16 42 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 43 H 0.19 0.67 8.06 -2.91 -0.02 0.65 16 44 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 45 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 46 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 47 H 0.15 4.70 4.96 -3.02 -0.01 4.69 16 Total: -1.00 -74.25 377.48 2.50 -71.75 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.28 Total: 22.66 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 5.80 Total: 7.34 kcal Atomic # 7 Polarization: -121.60 SS G_CDS: -5.56 Total: -127.16 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.05 Total: -22.17 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -74.25 2.50 -71.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942587708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.214 kcal (2) G-P(sol) polarization free energy of solvation -74.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds