Wall clock time and date at job start Tue Mar 31 2020 22:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.49808 * 2 1 4 4 C 1.53195 * 109.49780 * 239.93636 * 2 1 3 5 5 N 1.46924 * 108.77684 * 185.38007 * 4 2 1 6 6 C 1.36937 * 120.63157 * 233.58710 * 5 4 2 7 7 H 1.08001 * 120.00053 * 31.07630 * 6 5 4 8 8 C 1.38818 * 119.99825 * 211.07479 * 6 5 4 9 9 N 1.31618 * 119.99885 * 9.70982 * 8 6 5 10 10 Si 1.86801 * 119.99676 * 189.71014 * 8 6 5 11 11 H 1.48498 * 109.47120 * 90.00366 * 10 8 6 12 12 H 1.48508 * 109.46667 * 210.00073 * 10 8 6 13 13 H 1.48494 * 109.47220 * 329.99770 * 10 8 6 14 14 C 1.46931 * 118.73898 * 53.60648 * 5 4 2 15 15 C 1.53197 * 108.77331 * 306.39434 * 14 5 4 16 16 C 1.53035 * 109.31348 * 54.63313 * 15 14 5 17 17 H 1.09000 * 109.45789 * 178.61161 * 16 15 14 18 18 N 1.46508 * 109.45929 * 58.65436 * 16 15 14 19 19 C 1.34778 * 119.99968 * 84.93244 * 18 16 15 20 20 O 1.21545 * 120.00021 * 0.02562 * 19 18 16 21 21 C 1.47943 * 119.99948 * 179.97438 * 19 18 16 22 22 N 1.32196 * 120.15759 * 5.20220 * 21 19 18 23 23 C 1.32033 * 122.67865 * 179.70317 * 22 21 19 24 24 C 1.36688 * 122.02886 * 0.58141 * 23 22 21 25 25 C 1.40530 * 118.84774 * 359.71840 * 24 23 22 26 26 C 1.40321 * 122.22697 * 180.02562 * 25 24 23 27 27 C 1.36208 * 119.45657 * 179.97438 * 26 25 24 28 28 C 1.39385 * 121.00006 * 359.97438 * 27 26 25 29 29 C 1.36259 * 121.08242 * 0.03826 * 28 27 26 30 30 C 1.40100 * 119.53701 * 359.96269 * 29 28 27 31 31 H 1.09000 * 109.47215 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46895 * 300.00119 * 1 2 3 33 33 H 1.09001 * 109.47258 * 60.00341 * 1 2 3 34 34 H 1.09004 * 109.58659 * 305.16874 * 4 2 1 35 35 H 1.08996 * 109.58545 * 65.45141 * 4 2 1 36 36 H 0.96999 * 119.99820 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.58463 * 66.17773 * 14 5 4 38 38 H 1.08991 * 109.58782 * 186.60639 * 14 5 4 39 39 H 1.09001 * 109.49582 * 174.58305 * 15 14 5 40 40 H 1.08991 * 109.49434 * 294.64933 * 15 14 5 41 41 H 0.96998 * 120.00078 * 264.92256 * 18 16 15 42 42 H 1.08000 * 118.98537 * 180.30570 * 23 22 21 43 43 H 1.07997 * 120.57763 * 179.69906 * 24 23 22 44 44 H 1.08000 * 120.27470 * 359.96086 * 26 25 24 45 45 H 1.07993 * 119.49692 * 180.02562 * 27 26 25 46 46 H 1.07999 * 119.46069 * 180.02562 * 28 27 26 47 47 H 1.07995 * 120.23261 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5046 -0.8281 -1.1703 6 6 4.2931 -0.3778 -2.1953 7 1 3.9698 0.4579 -2.7983 8 6 5.5079 -0.9954 -2.4594 9 7 5.8167 -2.1245 -1.8576 10 14 6.7044 -0.2240 -3.6688 11 1 7.6142 0.6993 -2.9444 12 1 7.5020 -1.2912 -4.3250 13 1 5.9483 0.5329 -4.6987 14 6 4.1060 -1.4255 0.0299 15 6 3.5715 -0.6941 1.2654 16 6 2.0415 -0.7229 1.2481 17 1 1.6589 -0.2246 2.1388 18 7 1.5797 -2.1132 1.2305 19 6 1.4522 -2.7956 2.3858 20 8 1.7199 -2.2574 3.4422 21 6 0.9853 -4.1993 2.3681 22 7 0.7907 -4.8200 1.2173 23 6 0.3806 -6.0729 1.1435 24 6 0.1161 -6.8160 2.2598 25 6 0.2926 -6.2275 3.5236 26 6 0.0427 -6.9249 4.7153 27 6 0.2330 -6.2992 5.9101 28 6 0.6726 -4.9776 5.9664 29 6 0.9245 -4.2710 4.8289 30 6 0.7399 -4.8814 3.5815 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6057 -1.7215 -1.2983 35 1 1.7611 -0.1589 -2.1391 36 1 6.6654 -2.5563 -2.0424 37 1 3.8387 -2.4808 0.0859 38 1 5.1901 -1.3229 -0.0149 39 1 3.9345 -1.1887 2.1663 40 1 3.9165 0.3397 1.2537 41 1 1.3655 -2.5425 0.3875 42 1 0.2459 -6.5231 0.1710 43 1 -0.2229 -7.8377 2.1721 44 1 -0.2980 -7.9493 4.6855 45 1 0.0413 -6.8354 6.8277 46 1 0.8156 -4.5059 6.9273 47 1 1.2642 -3.2476 4.8885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942587709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:02 Heat of formation + Delta-G solvation = 44.680377 kcal Electronic energy + Delta-G solvation = -29721.942995 eV Core-core repulsion = 25870.112710 eV Total energy + Delta-G solvation = -3851.830285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.19084 -39.56383 -37.61959 -37.45361 -34.25869 -33.09415 -32.50467 -31.26644 -31.09592 -30.25114 -29.44393 -25.95879 -25.50719 -24.71856 -23.63781 -22.97312 -21.96290 -21.12324 -20.70832 -18.61070 -18.29136 -17.50180 -17.22376 -16.65203 -15.89973 -15.60865 -15.20089 -14.82828 -14.68106 -14.54487 -14.08492 -13.92873 -13.83808 -13.61066 -13.35471 -13.26679 -12.98810 -12.85723 -12.49978 -12.24320 -12.06671 -11.95459 -11.57950 -11.43426 -11.34644 -11.00545 -10.76072 -10.69978 -10.31005 -10.28833 -10.16618 -10.00545 -9.95805 -9.72018 -9.42048 -9.32448 -9.25786 -8.62815 -8.44438 -8.17842 -6.59154 -5.74986 -3.24079 -0.02068 0.76000 1.62699 2.67681 3.22736 3.31361 3.38719 3.45181 3.46297 4.03920 4.16981 4.42181 4.49796 4.64087 4.65916 4.74968 4.96950 5.07048 5.17675 5.19556 5.33482 5.37505 5.39875 5.53112 5.57648 5.64824 5.68907 5.87971 5.91006 5.96156 6.01913 6.12948 6.20341 6.21089 6.31326 6.33437 6.39656 6.48770 6.52317 6.65831 6.70190 6.72861 6.83863 6.96118 7.02599 7.44325 7.60821 7.76103 7.81895 7.92557 8.44180 8.50034 9.24734 9.86051 10.43697 11.32075 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016004 B = 0.003050 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.146356 B = 9177.115935 C = 9650.060852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 H 0.083 0.917 4 C 0.151 3.849 5 N -0.591 5.591 6 C -0.253 4.253 7 H 0.064 0.936 8 C 0.004 3.996 9 N -0.903 5.903 10 Si 0.905 3.095 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.174 3.826 15 C -0.155 4.155 16 C 0.157 3.843 17 H 0.075 0.925 18 N -0.682 5.682 19 C 0.570 3.430 20 O -0.540 6.540 21 C 0.131 3.869 22 N -0.453 5.453 23 C 0.078 3.922 24 C -0.138 4.138 25 C -0.031 4.031 26 C -0.122 4.122 27 C -0.095 4.095 28 C -0.128 4.128 29 C -0.087 4.087 30 C -0.074 4.074 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.016 0.984 35 H 0.056 0.944 36 H 0.253 0.747 37 H 0.019 0.981 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.413 0.587 42 H 0.161 0.839 43 H 0.141 0.859 44 H 0.131 0.869 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.074 -7.920 12.479 20.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 H 0.101 0.899 4 C 0.024 3.976 5 N -0.314 5.314 6 C -0.382 4.382 7 H 0.082 0.918 8 C -0.194 4.194 9 N -0.547 5.547 10 Si 0.735 3.265 11 H -0.215 1.215 12 H -0.217 1.217 13 H -0.205 1.205 14 C 0.048 3.952 15 C -0.195 4.195 16 C 0.053 3.947 17 H 0.093 0.907 18 N -0.332 5.332 19 C 0.355 3.645 20 O -0.418 6.418 21 C -0.021 4.021 22 N -0.164 5.164 23 C -0.068 4.068 24 C -0.158 4.158 25 C -0.036 4.036 26 C -0.140 4.140 27 C -0.114 4.114 28 C -0.146 4.146 29 C -0.105 4.105 30 C -0.077 4.077 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.251 0.749 42 H 0.178 0.822 43 H 0.159 0.841 44 H 0.149 0.851 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.583 -7.246 12.284 19.695 hybrid contribution 0.446 -0.645 -0.299 0.839 sum -13.137 -7.891 11.985 19.455 Atomic orbital electron populations 1.21777 0.95772 1.01437 1.01079 1.21951 0.94565 1.00709 0.96724 0.89914 1.20926 0.86211 0.96251 0.94245 1.44022 0.99056 1.71550 1.16723 1.19173 1.00477 1.09632 1.08946 0.91801 1.25165 1.00014 0.95488 0.98766 1.69977 1.23142 1.16554 1.45064 0.86260 0.81161 0.78193 0.80925 1.21474 1.21749 1.20465 1.20770 0.99458 0.92955 0.82027 1.22595 0.93893 1.02028 1.00990 1.21015 0.95387 0.80106 0.98168 0.90657 1.46027 1.64165 1.13995 1.08996 1.17687 0.78120 0.84159 0.84549 1.90540 1.52147 1.68950 1.30197 1.21508 0.97197 0.94892 0.88528 1.67330 1.09689 1.11077 1.28289 1.22234 0.96066 0.89322 0.99156 1.22123 1.00185 1.01198 0.92271 1.18199 0.97909 0.93018 0.94449 1.20899 1.01845 0.99884 0.91343 1.21054 0.97321 0.95100 0.97944 1.21104 0.99957 0.94484 0.99091 1.22238 0.94993 1.02978 0.90336 1.18723 1.00634 0.93730 0.94581 0.93008 0.93294 0.92694 0.96632 0.92503 0.93655 0.96304 0.89286 0.92682 0.91685 0.74895 0.82220 0.84112 0.85146 0.85696 0.85513 0.80875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.06 37.16 0.34 -1.62 16 2 C -0.12 -1.99 2.67 -90.50 -0.24 -2.23 16 3 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 4 C 0.15 3.03 5.50 -3.71 -0.02 3.00 16 5 N -0.59 -14.49 2.99 -172.31 -0.52 -15.01 16 6 C -0.25 -6.83 9.59 -15.06 -0.14 -6.98 16 7 H 0.06 1.70 7.85 -52.49 -0.41 1.28 16 8 C 0.00 0.12 5.07 -17.43 -0.09 0.03 16 9 N -0.90 -26.21 10.97 55.49 0.61 -25.60 16 10 Si 0.90 21.70 29.56 -169.99 -5.03 16.67 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 14 C 0.17 4.18 5.00 -3.71 -0.02 4.16 16 15 C -0.15 -3.11 5.77 -26.61 -0.15 -3.26 16 16 C 0.16 2.75 2.21 -67.89 -0.15 2.60 16 17 H 0.08 1.29 7.58 -51.93 -0.39 0.89 16 18 N -0.68 -11.72 3.59 -54.68 -0.20 -11.92 16 19 C 0.57 9.86 7.74 -12.28 -0.10 9.76 16 20 O -0.54 -9.86 13.10 5.33 0.07 -9.79 16 21 C 0.13 2.08 6.81 -82.55 -0.56 1.52 16 22 N -0.45 -6.89 9.52 -9.81 -0.09 -6.98 16 23 C 0.08 0.94 11.06 -18.03 -0.20 0.74 16 24 C -0.14 -1.43 9.88 -39.28 -0.39 -1.82 16 25 C -0.03 -0.37 5.75 -106.82 -0.61 -0.98 16 26 C -0.12 -1.16 9.82 -39.53 -0.39 -1.55 16 27 C -0.09 -0.86 9.95 -39.88 -0.40 -1.26 16 28 C -0.13 -1.35 9.95 -39.87 -0.40 -1.75 16 29 C -0.09 -1.16 9.23 -39.60 -0.37 -1.53 16 30 C -0.07 -1.06 5.76 -106.59 -0.61 -1.68 16 31 H 0.05 0.71 7.54 -51.93 -0.39 0.32 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.02 0.32 6.64 -51.93 -0.34 -0.02 16 35 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 36 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.02 0.49 7.74 -51.93 -0.40 0.08 16 38 H 0.09 2.44 6.04 -51.93 -0.31 2.13 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.41 7.25 6.09 -40.82 -0.25 7.00 16 42 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 47 H 0.17 2.56 4.96 -52.50 -0.26 2.30 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -31.09 373.56 -10.56 -41.66 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.54 Total: 8.18 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -4.50 Total: -2.83 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.20 Total: -59.51 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.07 Total: -9.79 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.09 -10.56 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942587709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.339 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds