Wall clock time and date at job start Tue Mar 31 2020 22:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.49808 * 2 1 4 4 C 1.53195 * 109.49780 * 239.93636 * 2 1 3 5 5 N 1.46924 * 108.77684 * 185.38007 * 4 2 1 6 6 C 1.36937 * 120.63157 * 233.58710 * 5 4 2 7 7 H 1.08001 * 120.00053 * 31.07630 * 6 5 4 8 8 C 1.38818 * 119.99825 * 211.07479 * 6 5 4 9 9 N 1.31618 * 119.99885 * 9.70982 * 8 6 5 10 10 Si 1.86801 * 119.99676 * 189.71014 * 8 6 5 11 11 H 1.48498 * 109.47120 * 90.00366 * 10 8 6 12 12 H 1.48508 * 109.46667 * 210.00073 * 10 8 6 13 13 H 1.48494 * 109.47220 * 329.99770 * 10 8 6 14 14 C 1.46931 * 118.73898 * 53.60648 * 5 4 2 15 15 C 1.53197 * 108.77331 * 306.39434 * 14 5 4 16 16 C 1.53035 * 109.31348 * 54.63313 * 15 14 5 17 17 H 1.09000 * 109.45789 * 178.61161 * 16 15 14 18 18 N 1.46508 * 109.45929 * 58.65436 * 16 15 14 19 19 C 1.34778 * 119.99968 * 84.93244 * 18 16 15 20 20 O 1.21545 * 120.00021 * 0.02562 * 19 18 16 21 21 C 1.47943 * 119.99948 * 179.97438 * 19 18 16 22 22 N 1.32196 * 120.15759 * 5.20220 * 21 19 18 23 23 C 1.32033 * 122.67865 * 179.70317 * 22 21 19 24 24 C 1.36688 * 122.02886 * 0.58141 * 23 22 21 25 25 C 1.40530 * 118.84774 * 359.71840 * 24 23 22 26 26 C 1.40321 * 122.22697 * 180.02562 * 25 24 23 27 27 C 1.36208 * 119.45657 * 179.97438 * 26 25 24 28 28 C 1.39385 * 121.00006 * 359.97438 * 27 26 25 29 29 C 1.36259 * 121.08242 * 0.03826 * 28 27 26 30 30 C 1.40100 * 119.53701 * 359.96269 * 29 28 27 31 31 H 1.09000 * 109.47215 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46895 * 300.00119 * 1 2 3 33 33 H 1.09001 * 109.47258 * 60.00341 * 1 2 3 34 34 H 1.09004 * 109.58659 * 305.16874 * 4 2 1 35 35 H 1.08996 * 109.58545 * 65.45141 * 4 2 1 36 36 H 0.96999 * 119.99820 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.58463 * 66.17773 * 14 5 4 38 38 H 1.08991 * 109.58782 * 186.60639 * 14 5 4 39 39 H 1.09001 * 109.49582 * 174.58305 * 15 14 5 40 40 H 1.08991 * 109.49434 * 294.64933 * 15 14 5 41 41 H 0.96998 * 120.00078 * 264.92256 * 18 16 15 42 42 H 1.08000 * 118.98537 * 180.30570 * 23 22 21 43 43 H 1.07997 * 120.57763 * 179.69906 * 24 23 22 44 44 H 1.08000 * 120.27470 * 359.96086 * 26 25 24 45 45 H 1.07993 * 119.49692 * 180.02562 * 27 26 25 46 46 H 1.07999 * 119.46069 * 180.02562 * 28 27 26 47 47 H 1.07995 * 120.23261 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5046 -0.8281 -1.1703 6 6 4.2931 -0.3778 -2.1953 7 1 3.9698 0.4579 -2.7983 8 6 5.5079 -0.9954 -2.4594 9 7 5.8167 -2.1245 -1.8576 10 14 6.7044 -0.2240 -3.6688 11 1 7.6142 0.6993 -2.9444 12 1 7.5020 -1.2912 -4.3250 13 1 5.9483 0.5329 -4.6987 14 6 4.1060 -1.4255 0.0299 15 6 3.5715 -0.6941 1.2654 16 6 2.0415 -0.7229 1.2481 17 1 1.6589 -0.2246 2.1388 18 7 1.5797 -2.1132 1.2305 19 6 1.4522 -2.7956 2.3858 20 8 1.7199 -2.2574 3.4422 21 6 0.9853 -4.1993 2.3681 22 7 0.7907 -4.8200 1.2173 23 6 0.3806 -6.0729 1.1435 24 6 0.1161 -6.8160 2.2598 25 6 0.2926 -6.2275 3.5236 26 6 0.0427 -6.9249 4.7153 27 6 0.2330 -6.2992 5.9101 28 6 0.6726 -4.9776 5.9664 29 6 0.9245 -4.2710 4.8289 30 6 0.7399 -4.8814 3.5815 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6057 -1.7215 -1.2983 35 1 1.7611 -0.1589 -2.1391 36 1 6.6654 -2.5563 -2.0424 37 1 3.8387 -2.4808 0.0859 38 1 5.1901 -1.3229 -0.0149 39 1 3.9345 -1.1887 2.1663 40 1 3.9165 0.3397 1.2537 41 1 1.3655 -2.5425 0.3875 42 1 0.2459 -6.5231 0.1710 43 1 -0.2229 -7.8377 2.1721 44 1 -0.2980 -7.9493 4.6855 45 1 0.0413 -6.8354 6.8277 46 1 0.8156 -4.5059 6.9273 47 1 1.2642 -3.2476 4.8885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942587709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:01 Heat of formation + Delta-G solvation = 27.029728 kcal Electronic energy + Delta-G solvation = -29722.708384 eV Core-core repulsion = 25870.112710 eV Total energy + Delta-G solvation = -3852.595674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.19713 -40.88590 -39.09079 -38.35988 -36.02542 -34.16587 -33.84403 -32.88641 -32.15614 -31.83651 -30.51010 -27.40656 -27.25560 -25.95735 -24.51850 -24.11485 -23.47204 -22.77413 -21.94957 -20.13606 -19.39012 -18.74078 -18.34249 -18.11170 -16.99409 -16.80209 -16.76669 -16.43407 -15.82269 -15.69512 -15.57529 -15.41011 -15.07769 -14.75229 -14.67650 -14.49153 -14.38605 -14.13385 -13.87296 -13.52099 -13.17157 -13.13518 -12.93939 -12.73576 -12.70251 -12.57004 -12.48618 -12.32771 -12.16413 -11.93490 -11.68064 -11.49691 -11.19727 -11.11982 -11.05210 -10.55109 -10.44747 -10.13881 -10.03989 -9.06029 -8.61434 -7.84504 -5.36664 -0.96325 -0.11260 0.71452 1.46914 1.47906 1.56820 1.63029 2.05948 2.23612 2.50906 3.06792 3.12938 3.30876 3.60437 3.66249 3.71021 3.79341 3.81999 3.91839 4.06141 4.11084 4.21155 4.28883 4.39722 4.42539 4.49071 4.59839 4.66343 4.73088 4.76311 4.78974 4.85172 4.96726 5.01309 5.06201 5.10542 5.12470 5.19366 5.28774 5.41167 5.42650 5.46601 5.52475 5.58711 5.64150 5.67232 5.76109 5.92515 6.40139 6.41786 6.78654 7.12606 7.16111 7.85721 8.39048 9.20412 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016004 B = 0.003050 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.146356 B = 9177.115935 C = 9650.060852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 H 0.084 0.916 4 C 0.150 3.850 5 N -0.607 5.607 6 C -0.260 4.260 7 H 0.070 0.930 8 C -0.051 4.051 9 N -0.937 5.937 10 Si 0.970 3.030 11 H -0.287 1.287 12 H -0.297 1.297 13 H -0.266 1.266 14 C 0.190 3.810 15 C -0.143 4.143 16 C 0.163 3.837 17 H 0.085 0.915 18 N -0.683 5.683 19 C 0.567 3.433 20 O -0.558 6.558 21 C 0.090 3.910 22 N -0.473 5.473 23 C 0.050 3.950 24 C -0.107 4.107 25 C -0.054 4.054 26 C -0.109 4.109 27 C -0.098 4.098 28 C -0.113 4.113 29 C -0.127 4.127 30 C -0.088 4.088 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.014 0.986 35 H 0.061 0.939 36 H 0.247 0.753 37 H -0.008 1.008 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.410 0.590 42 H 0.185 0.815 43 H 0.187 0.813 44 H 0.170 0.830 45 H 0.164 0.836 46 H 0.148 0.852 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.322 -9.421 13.471 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 H 0.103 0.897 4 C 0.024 3.976 5 N -0.330 5.330 6 C -0.390 4.390 7 H 0.087 0.913 8 C -0.246 4.246 9 N -0.583 5.583 10 Si 0.798 3.202 11 H -0.214 1.214 12 H -0.223 1.223 13 H -0.190 1.190 14 C 0.064 3.936 15 C -0.183 4.183 16 C 0.059 3.941 17 H 0.103 0.897 18 N -0.333 5.333 19 C 0.353 3.647 20 O -0.438 6.438 21 C -0.060 4.060 22 N -0.185 5.185 23 C -0.096 4.096 24 C -0.126 4.126 25 C -0.059 4.059 26 C -0.126 4.126 27 C -0.117 4.117 28 C -0.131 4.131 29 C -0.146 4.146 30 C -0.091 4.091 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.032 0.968 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.010 0.990 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.248 0.752 42 H 0.202 0.798 43 H 0.204 0.796 44 H 0.188 0.812 45 H 0.182 0.818 46 H 0.166 0.834 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.865 -8.718 13.285 22.454 hybrid contribution 1.076 -0.329 -0.509 1.235 sum -14.789 -9.047 12.775 21.536 Atomic orbital electron populations 1.21695 0.92908 1.01865 1.02638 1.21804 0.96779 0.99865 0.94173 0.89730 1.21068 0.83633 0.96676 0.96228 1.44231 1.00901 1.71477 1.16376 1.19538 1.00931 1.09521 1.09016 0.91251 1.25934 1.01852 0.96054 1.00795 1.70166 1.23242 1.18096 1.46770 0.85230 0.78879 0.77108 0.78978 1.21383 1.22336 1.19039 1.20395 0.97279 0.92059 0.83907 1.22410 0.96152 1.01273 0.98478 1.20918 0.93215 0.80864 0.99109 0.89672 1.45978 1.64530 1.13801 1.09016 1.18066 0.77498 0.85072 0.84088 1.90528 1.52894 1.69738 1.30630 1.21251 1.00635 0.94433 0.89713 1.67219 1.09937 1.12850 1.28492 1.22744 0.97045 0.88658 1.01153 1.22613 0.96613 1.02538 0.90878 1.18601 0.98596 0.92303 0.96400 1.21387 0.99775 1.01263 0.90217 1.21487 0.96306 0.94328 0.99578 1.21455 0.97493 0.95241 0.98885 1.22074 0.98356 1.02740 0.91475 1.18917 1.00891 0.95106 0.94149 0.93173 0.91759 0.91083 0.96804 0.92066 0.94345 0.99010 0.93087 0.93376 0.91393 0.75247 0.79823 0.79599 0.81215 0.81829 0.83407 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.06 71.98 0.65 -2.80 16 2 C -0.11 -3.49 2.67 -10.72 -0.03 -3.52 16 3 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 4 C 0.15 6.06 5.50 86.36 0.47 6.54 16 5 N -0.61 -30.66 2.99 -699.07 -2.09 -32.75 16 6 C -0.26 -14.33 9.59 84.03 0.81 -13.52 16 7 H 0.07 3.68 7.85 -2.91 -0.02 3.66 16 8 C -0.05 -2.90 5.07 84.86 0.43 -2.47 16 9 N -0.94 -56.73 10.97 21.65 0.24 -56.50 16 10 Si 0.97 45.52 29.56 68.60 2.03 47.54 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 13 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 14 C 0.19 9.66 5.00 86.36 0.43 10.09 16 15 C -0.14 -6.00 5.77 30.67 0.18 -5.83 16 16 C 0.16 5.84 2.21 45.01 0.10 5.94 16 17 H 0.09 2.93 7.58 -2.39 -0.02 2.91 16 18 N -0.68 -24.67 3.59 -445.18 -1.60 -26.27 16 19 C 0.57 20.86 7.74 86.82 0.67 21.53 16 20 O -0.56 -21.78 13.10 -3.86 -0.05 -21.83 16 21 C 0.09 3.02 6.81 42.43 0.29 3.31 16 22 N -0.47 -14.90 9.52 -184.96 -1.76 -16.66 16 23 C 0.05 1.16 11.06 84.30 0.93 2.10 16 24 C -0.11 -1.92 9.88 22.47 0.22 -1.70 16 25 C -0.05 -1.18 5.75 -21.29 -0.12 -1.30 16 26 C -0.11 -1.62 9.82 22.30 0.22 -1.40 16 27 C -0.10 -1.40 9.95 22.07 0.22 -1.18 16 28 C -0.11 -2.20 9.95 22.08 0.22 -1.98 16 29 C -0.13 -3.53 9.23 22.26 0.21 -3.32 16 30 C -0.09 -2.57 5.76 -21.14 -0.12 -2.69 16 31 H 0.05 1.33 7.54 -2.39 -0.02 1.31 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.01 0.58 6.64 -2.39 -0.02 0.57 16 35 H 0.06 2.41 7.94 -2.39 -0.02 2.39 16 36 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 37 H -0.01 -0.45 7.74 -2.38 -0.02 -0.47 16 38 H 0.05 2.98 6.04 -2.39 -0.01 2.96 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.41 15.16 6.09 -92.71 -0.56 14.60 16 42 H 0.18 3.10 8.06 -2.91 -0.02 3.07 16 43 H 0.19 1.56 8.06 -2.91 -0.02 1.53 16 44 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 45 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 46 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 47 H 0.15 4.78 4.96 -3.02 -0.01 4.77 16 Total: -1.00 -72.57 373.56 2.98 -69.59 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.43 Total: 29.07 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 5.78 Total: 7.79 kcal Atomic # 7 Polarization: -126.96 SS G_CDS: -5.21 Total: -132.17 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.83 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -72.57 2.98 -69.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942587709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.620 kcal (2) G-P(sol) polarization free energy of solvation -72.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds