Wall clock time and date at job start Tue Mar 31 2020 22:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.49674 * 2 1 4 4 C 1.53190 * 109.52330 * 239.91517 * 2 1 3 5 5 N 1.46935 * 108.77243 * 185.39737 * 4 2 1 6 6 C 1.36936 * 120.62916 * 233.58768 * 5 4 2 7 7 H 1.07995 * 119.99869 * 31.07490 * 6 5 4 8 8 C 1.38810 * 120.00054 * 211.08092 * 6 5 4 9 9 N 1.31625 * 119.99947 * 9.71234 * 8 6 5 10 10 Si 1.86797 * 120.00186 * 189.70933 * 8 6 5 11 11 H 1.48493 * 109.46916 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46866 * 119.99847 * 10 8 6 13 13 H 1.48494 * 109.47381 * 239.99795 * 10 8 6 14 14 C 1.46926 * 118.73772 * 53.61342 * 5 4 2 15 15 C 1.53187 * 108.77191 * 306.38766 * 14 5 4 16 16 C 1.53042 * 109.31735 * 54.63875 * 15 14 5 17 17 H 1.08996 * 109.45920 * 58.64956 * 16 15 14 18 18 N 1.46497 * 109.45105 * 178.61951 * 16 15 14 19 19 C 1.34773 * 120.00157 * 275.03441 * 18 16 15 20 20 O 1.21545 * 120.00105 * 359.97438 * 19 18 16 21 21 C 1.47947 * 120.00542 * 180.02562 * 19 18 16 22 22 N 1.32199 * 120.15275 * 5.19530 * 21 19 18 23 23 C 1.32031 * 122.67762 * 179.75202 * 22 21 19 24 24 C 1.36686 * 122.02764 * 0.53445 * 23 22 21 25 25 C 1.40530 * 118.84925 * 359.74510 * 24 23 22 26 26 C 1.40321 * 122.22679 * 179.97438 * 25 24 23 27 27 C 1.36203 * 119.45331 * 180.02562 * 26 25 24 28 28 C 1.39375 * 121.00621 * 359.97438 * 27 26 25 29 29 C 1.36261 * 121.07893 * 0.02562 * 28 27 26 30 30 C 1.40098 * 119.53737 * 359.97438 * 29 28 27 31 31 H 1.09003 * 109.47081 * 299.93950 * 1 2 3 32 32 H 1.09001 * 109.46910 * 59.93846 * 1 2 3 33 33 H 1.09000 * 109.47319 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.58849 * 305.18403 * 4 2 1 35 35 H 1.09001 * 109.58881 * 65.61362 * 4 2 1 36 36 H 0.96999 * 119.99820 * 180.02562 * 9 8 6 37 37 H 1.08995 * 109.58939 * 66.17313 * 14 5 4 38 38 H 1.08998 * 109.58101 * 186.60015 * 14 5 4 39 39 H 1.09000 * 109.50049 * 294.68218 * 15 14 5 40 40 H 1.09004 * 109.49830 * 174.58854 * 15 14 5 41 41 H 0.97003 * 120.00175 * 95.03251 * 18 16 15 42 42 H 1.08000 * 118.98709 * 180.26415 * 23 22 21 43 43 H 1.08009 * 120.57257 * 179.76772 * 24 23 22 44 44 H 1.08002 * 120.27320 * 359.97438 * 26 25 24 45 45 H 1.08004 * 119.49348 * 180.02562 * 27 26 25 46 46 H 1.08003 * 119.46352 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.23226 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7238 -1.2493 5 7 3.5054 -0.8284 -1.1688 6 6 4.2944 -0.3783 -2.1936 7 1 3.9714 0.4571 -2.7969 8 6 5.5093 -0.9960 -2.4569 9 7 5.8177 -2.1251 -1.8548 10 14 6.7065 -0.2250 -3.6659 11 1 6.1271 1.0327 -4.2022 12 1 7.9849 0.0756 -2.9728 13 1 6.9593 -1.1700 -4.7831 14 6 4.1060 -1.4256 0.0317 15 6 3.5708 -0.6939 1.2666 16 6 2.0408 -0.7227 1.2486 17 1 1.6972 -1.7570 1.2356 18 7 1.5261 -0.0524 2.4453 19 6 1.3976 -0.7376 3.5987 20 8 1.7082 -1.9117 3.6460 21 6 0.8773 -0.0609 4.8072 22 7 0.4416 1.1851 4.7349 23 6 -0.0369 1.8347 5.7800 24 6 -0.1054 1.2632 7.0197 25 6 0.3432 -0.0586 7.1827 26 6 0.3060 -0.7139 8.4229 27 6 0.7561 -1.9960 8.5167 28 6 1.2523 -2.6662 7.4000 29 6 1.3029 -2.0600 6.1807 30 6 0.8487 -0.7416 6.0455 31 1 -0.3633 0.5129 0.8906 32 1 -0.3633 0.5148 -0.8895 33 1 -0.3634 -1.0277 -0.0005 34 1 1.6064 -1.7217 -1.2977 35 1 1.7645 -0.1582 -2.1388 36 1 6.6668 -2.5565 -2.0385 37 1 3.8387 -2.4807 0.0878 38 1 5.1902 -1.3230 -0.0126 39 1 3.9154 0.3401 1.2547 40 1 3.9333 -1.1883 2.1680 41 1 1.2779 0.8845 2.4075 42 1 -0.3809 2.8505 5.6523 43 1 -0.4979 1.8177 7.8594 44 1 -0.0758 -0.2056 9.2960 45 1 0.7273 -2.5011 9.4709 46 1 1.6032 -3.6825 7.5029 47 1 1.6897 -2.5924 5.3244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942587710.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:06 Heat of formation + Delta-G solvation = 41.844956 kcal Electronic energy + Delta-G solvation = -29125.052579 eV Core-core repulsion = 25273.099341 eV Total energy + Delta-G solvation = -3851.953238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.30890 -39.51529 -37.65989 -37.54888 -34.56924 -33.21377 -32.63084 -31.38964 -31.15902 -30.25704 -29.43277 -25.97861 -25.63934 -24.54195 -23.75464 -23.02903 -22.00513 -20.92441 -20.54318 -19.41659 -18.22040 -17.63963 -17.28536 -16.65336 -16.08401 -15.85712 -15.28013 -14.97070 -14.77392 -14.62174 -14.02268 -13.97417 -13.85371 -13.61230 -13.44156 -13.25714 -13.05194 -12.75935 -12.59004 -12.37010 -12.06454 -12.03982 -11.67445 -11.43058 -11.28618 -10.97085 -10.82056 -10.62796 -10.41038 -10.29360 -10.18261 -10.12262 -9.96277 -9.78738 -9.65780 -9.37535 -9.34339 -8.72303 -8.43772 -8.28474 -6.60980 -5.75684 -3.24324 -0.15232 0.63531 1.51950 2.54298 3.12291 3.16056 3.38347 3.45618 3.47593 3.91032 4.00047 4.30181 4.49887 4.51919 4.53722 4.63980 4.85992 4.97020 5.06084 5.15327 5.21258 5.36602 5.43239 5.46746 5.55836 5.57533 5.64434 5.77724 5.85466 5.93417 6.03249 6.10922 6.15050 6.24302 6.28523 6.31441 6.34393 6.46845 6.50223 6.61954 6.67941 6.71401 6.81516 6.95604 7.00073 7.42301 7.44727 7.73999 7.77773 7.81585 8.31889 8.50060 9.24459 9.85705 10.43467 11.32092 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019693 B = 0.002563 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.471497 B =10920.883049 C =11546.940479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 H 0.072 0.928 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.252 4.252 7 H 0.065 0.935 8 C 0.003 3.997 9 N -0.904 5.904 10 Si 0.904 3.096 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.290 1.290 14 C 0.174 3.826 15 C -0.148 4.148 16 C 0.154 3.846 17 H 0.085 0.915 18 N -0.694 5.694 19 C 0.568 3.432 20 O -0.529 6.529 21 C 0.131 3.869 22 N -0.459 5.459 23 C 0.074 3.926 24 C -0.136 4.136 25 C -0.031 4.031 26 C -0.123 4.123 27 C -0.092 4.092 28 C -0.125 4.125 29 C -0.087 4.087 30 C -0.074 4.074 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.058 0.942 36 H 0.254 0.746 37 H 0.020 0.980 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.406 0.594 42 H 0.160 0.840 43 H 0.141 0.859 44 H 0.131 0.869 45 H 0.126 0.874 46 H 0.129 0.871 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.513 5.187 20.540 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 H 0.090 0.910 4 C 0.028 3.972 5 N -0.316 5.316 6 C -0.382 4.382 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.548 5.548 10 Si 0.734 3.266 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.217 1.217 14 C 0.048 3.952 15 C -0.189 4.189 16 C 0.051 3.949 17 H 0.103 0.897 18 N -0.343 5.343 19 C 0.352 3.648 20 O -0.407 6.407 21 C -0.021 4.021 22 N -0.170 5.170 23 C -0.072 4.072 24 C -0.156 4.156 25 C -0.036 4.036 26 C -0.141 4.141 27 C -0.112 4.112 28 C -0.144 4.144 29 C -0.106 4.106 30 C -0.077 4.077 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.039 0.961 38 H 0.111 0.889 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.242 0.758 42 H 0.177 0.823 43 H 0.159 0.841 44 H 0.149 0.851 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -13.136 4.784 19.718 24.171 hybrid contribution 0.438 0.544 0.452 0.832 sum -12.698 5.328 20.171 24.423 Atomic orbital electron populations 1.21785 0.95757 1.01561 1.01001 1.21974 0.94574 1.00660 0.96319 0.90986 1.20907 0.86011 0.96594 0.93700 1.44081 0.99235 1.71489 1.16747 1.19216 1.00419 1.09645 1.08874 0.91716 1.25176 1.00047 0.95521 0.98793 1.69978 1.23159 1.16633 1.45077 0.86187 0.81083 0.78557 0.80730 1.20272 1.21624 1.21654 1.20799 0.99664 0.92980 0.81768 1.22615 0.93572 1.01689 1.00989 1.21190 0.94776 0.96941 0.81974 0.89724 1.46193 1.63374 1.14975 1.09747 1.17722 0.78499 0.86004 0.82556 1.90593 1.51120 1.15471 1.83479 1.21548 0.96858 0.90460 0.93256 1.67288 1.08397 1.07844 1.33504 1.22186 0.97006 1.00044 0.87972 1.22122 0.99689 0.94470 0.99327 1.18203 0.97550 0.94130 0.93693 1.20905 1.01718 0.95471 0.96005 1.21086 0.96455 0.94639 0.98991 1.21145 0.99847 1.00715 0.92647 1.22268 0.95164 0.93270 0.99904 1.18726 1.00322 0.95912 0.92692 0.93283 0.92707 0.92931 0.96135 0.92356 0.93621 0.96145 0.88882 0.92610 0.92762 0.75820 0.82313 0.84108 0.85093 0.85570 0.85317 0.80765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.03 37.16 0.34 -1.66 16 2 C -0.11 -1.93 2.46 -90.50 -0.22 -2.15 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.16 3.20 5.80 -3.71 -0.02 3.17 16 5 N -0.59 -14.79 2.99 -172.32 -0.52 -15.30 16 6 C -0.25 -6.86 9.59 -15.06 -0.14 -7.01 16 7 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 8 C 0.00 0.09 5.07 -17.43 -0.09 0.00 16 9 N -0.90 -26.30 10.97 55.49 0.61 -25.70 16 10 Si 0.90 21.70 29.56 -169.99 -5.03 16.68 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 C 0.17 4.24 5.26 -3.71 -0.02 4.22 16 15 C -0.15 -2.98 5.65 -26.61 -0.15 -3.13 16 16 C 0.15 2.72 1.88 -67.89 -0.13 2.59 16 17 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 18 N -0.69 -10.61 4.35 -54.68 -0.24 -10.85 16 19 C 0.57 9.06 7.74 -12.28 -0.10 8.96 16 20 O -0.53 -9.54 13.10 5.33 0.07 -9.47 16 21 C 0.13 1.84 6.81 -82.55 -0.56 1.28 16 22 N -0.46 -5.74 9.52 -9.81 -0.09 -5.83 16 23 C 0.07 0.71 11.06 -18.03 -0.20 0.51 16 24 C -0.14 -1.18 9.88 -39.28 -0.39 -1.56 16 25 C -0.03 -0.33 5.75 -106.83 -0.61 -0.94 16 26 C -0.12 -1.04 9.82 -39.53 -0.39 -1.43 16 27 C -0.09 -0.77 9.95 -39.89 -0.40 -1.17 16 28 C -0.13 -1.26 9.95 -39.87 -0.40 -1.65 16 29 C -0.09 -1.12 9.23 -39.60 -0.37 -1.48 16 30 C -0.07 -0.97 5.76 -106.60 -0.61 -1.58 16 31 H 0.05 0.63 7.36 -51.93 -0.38 0.24 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 36 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 2.54 6.04 -51.93 -0.31 2.22 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.41 5.59 7.67 -40.82 -0.31 5.28 16 42 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 44 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 46 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 47 H 0.18 2.53 4.96 -52.49 -0.26 2.27 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -31.35 377.49 -10.66 -42.01 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.70 Total: 5.82 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -4.46 Total: -3.04 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.24 Total: -57.68 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.07 Total: -9.47 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.35 -10.66 -42.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942587710.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.856 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds