Wall clock time and date at job start Tue Mar 31 2020 22:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.52734 * 2 1 4 4 C 1.53194 * 109.49976 * 239.91641 * 2 1 3 5 5 N 1.46923 * 108.77656 * 185.41901 * 4 2 1 6 6 C 1.36937 * 120.62611 * 233.58705 * 5 4 2 7 7 H 1.07997 * 120.00476 * 27.69784 * 6 5 4 8 8 C 1.38818 * 119.99862 * 207.69594 * 6 5 4 9 9 N 1.31615 * 120.00121 * 17.35098 * 8 6 5 10 10 Si 1.86801 * 119.99912 * 197.35549 * 8 6 5 11 11 H 1.48497 * 109.47173 * 60.00013 * 10 8 6 12 12 H 1.48503 * 109.47174 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47092 * 299.99890 * 10 8 6 14 14 C 1.46931 * 118.74490 * 53.60541 * 5 4 2 15 15 C 1.53188 * 108.76999 * 306.39420 * 14 5 4 16 16 C 1.53043 * 109.31509 * 54.63605 * 15 14 5 17 17 H 1.08995 * 109.46307 * 58.64068 * 16 15 14 18 18 N 1.46508 * 109.46061 * 178.61283 * 16 15 14 19 19 C 1.34772 * 119.99643 * 274.99715 * 18 16 15 20 20 O 1.21565 * 120.00274 * 0.02562 * 19 18 16 21 21 C 1.47769 * 119.99980 * 179.97438 * 19 18 16 22 22 C 1.40635 * 119.80303 * 0.02562 * 21 19 18 23 23 C 1.35700 * 120.91991 * 180.02562 * 22 21 19 24 24 C 1.40759 * 120.11416 * 0.02562 * 23 22 21 25 25 N 1.33652 * 120.82996 * 179.97438 * 24 23 22 26 26 C 1.31120 * 121.38647 * 180.02562 * 25 24 23 27 27 C 1.39310 * 121.77458 * 359.97188 * 26 25 24 28 28 C 1.36580 * 119.90374 * 0.03191 * 27 26 25 29 29 C 1.40885 * 118.15712 * 359.97438 * 28 27 26 30 30 C 1.38552 * 119.80884 * 180.31975 * 21 19 18 31 31 H 1.08997 * 109.46879 * 299.92455 * 1 2 3 32 32 H 1.08999 * 109.46732 * 59.92545 * 1 2 3 33 33 H 1.09000 * 109.46833 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.58883 * 65.62723 * 4 2 1 35 35 H 1.09001 * 109.70005 * 305.26742 * 4 2 1 36 36 H 0.97004 * 120.00424 * 179.97438 * 9 8 6 37 37 H 1.08993 * 109.58728 * 186.60792 * 14 5 4 38 38 H 1.08997 * 109.58446 * 66.18073 * 14 5 4 39 39 H 1.09003 * 109.50102 * 294.68153 * 15 14 5 40 40 H 1.09009 * 109.52073 * 174.59954 * 15 14 5 41 41 H 0.96993 * 120.00157 * 94.99355 * 18 16 15 42 42 H 1.07994 * 119.53837 * 0.02562 * 22 21 19 43 43 H 1.08002 * 119.93786 * 180.02562 * 23 22 21 44 44 H 1.08011 * 119.10962 * 179.97438 * 26 25 24 45 45 H 1.08006 * 120.04908 * 180.02562 * 27 26 25 46 46 H 1.07998 * 120.91578 * 179.97438 * 28 27 26 47 47 H 1.07999 * 120.29476 * 359.73050 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5046 -0.8293 -1.1695 6 6 4.2936 -0.3795 -2.1943 7 1 3.9469 0.4204 -2.8318 8 6 5.5391 -0.9517 -2.4140 9 7 5.8279 -2.1222 -1.8861 10 14 6.8054 -0.0602 -3.4586 11 1 7.1181 1.2545 -2.8428 12 1 8.0438 -0.8758 -3.5387 13 1 6.2612 0.1498 -4.8243 14 6 4.1053 -1.4268 0.0309 15 6 3.5708 -0.6950 1.2660 16 6 2.0408 -0.7231 1.2484 17 1 1.6967 -1.7572 1.2352 18 7 1.5264 -0.0528 2.4453 19 6 1.3971 -0.7384 3.5984 20 8 1.7076 -1.9128 3.6455 21 6 0.8789 -0.0623 4.8058 22 6 0.5214 1.2966 4.7469 23 6 0.0436 1.9400 5.8420 24 6 -0.1005 1.2494 7.0600 25 7 -0.5691 1.8691 8.1475 26 6 -0.7073 1.2366 9.2877 27 6 -0.3749 -0.1093 9.4249 28 6 0.1099 -0.8036 8.3534 29 6 0.2571 -0.1206 7.1300 30 6 0.7537 -0.7692 5.9909 31 1 -0.3633 0.5127 0.8906 32 1 -0.3633 0.5150 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7639 -0.1581 -2.1389 35 1 1.6054 -1.7216 -1.3004 36 1 6.6981 -2.5223 -2.0399 37 1 5.1896 -1.3247 -0.0136 38 1 3.8376 -2.4819 0.0869 39 1 3.9159 0.3389 1.2541 40 1 3.9334 -1.1892 2.1675 41 1 1.2791 0.8843 2.4079 42 1 0.6286 1.8355 3.8172 43 1 -0.2265 2.9838 5.7788 44 1 -1.0892 1.7735 10.1436 45 1 -0.5003 -0.6030 10.3773 46 1 0.3732 -1.8473 8.4415 47 1 1.0291 -1.8126 6.0345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942595284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:36 Heat of formation + Delta-G solvation = 36.203257 kcal Electronic energy + Delta-G solvation = -28620.609113 eV Core-core repulsion = 24768.411233 eV Total energy + Delta-G solvation = -3852.197880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.21900 -39.86809 -37.88957 -36.80270 -34.62967 -33.85859 -32.76463 -31.33974 -30.98847 -30.39230 -29.62789 -26.01333 -25.63382 -24.43848 -24.17305 -22.58180 -22.09524 -21.01655 -20.74559 -19.55094 -18.40268 -17.95468 -17.25308 -16.70418 -16.07512 -15.83604 -15.02067 -14.82643 -14.79212 -14.48288 -14.36414 -14.20118 -13.86986 -13.74295 -13.56451 -13.43666 -13.29383 -12.81597 -12.67475 -12.36814 -12.16716 -11.89541 -11.78121 -11.49063 -11.31650 -11.06709 -10.96632 -10.80954 -10.66152 -10.36259 -10.25320 -10.04484 -9.92608 -9.87784 -9.79150 -9.49188 -9.18678 -8.76474 -8.58580 -8.41685 -6.69448 -5.78790 -3.21485 -0.09359 0.32159 1.58009 2.19129 3.21632 3.25087 3.38537 3.44533 3.45265 3.81064 3.87541 4.21936 4.31264 4.47542 4.48890 4.57119 4.67194 4.77651 4.85149 5.09276 5.12870 5.29679 5.38774 5.40082 5.48679 5.54136 5.58251 5.60174 5.66820 5.87013 5.91164 5.95019 5.99436 6.09271 6.12141 6.23685 6.26134 6.34099 6.40011 6.43768 6.59761 6.66309 6.77300 6.90756 6.95070 7.36738 7.50281 7.63179 7.68640 7.79049 8.30916 8.44396 9.20407 9.83875 10.40299 11.29720 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023817 B = 0.002203 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.372813 B =12708.536395 C =12953.641705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 H 0.071 0.929 4 C 0.155 3.845 5 N -0.592 5.592 6 C -0.255 4.255 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.901 5.901 10 Si 0.903 3.097 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.173 3.827 15 C -0.148 4.148 16 C 0.157 3.843 17 H 0.084 0.916 18 N -0.714 5.714 19 C 0.553 3.447 20 O -0.535 6.535 21 C -0.127 4.127 22 C -0.074 4.074 23 C -0.098 4.098 24 C 0.141 3.859 25 N -0.478 5.478 26 C 0.138 3.862 27 C -0.182 4.182 28 C -0.045 4.045 29 C -0.113 4.113 30 C -0.028 4.028 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.021 0.979 36 H 0.255 0.745 37 H 0.090 0.910 38 H 0.021 0.979 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.394 0.606 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.160 0.840 45 H 0.140 0.860 46 H 0.143 0.857 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.395 6.529 20.614 25.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 H 0.090 0.910 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.385 4.385 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.545 5.545 10 Si 0.732 3.268 11 H -0.211 1.211 12 H -0.216 1.216 13 H -0.209 1.209 14 C 0.047 3.953 15 C -0.188 4.188 16 C 0.054 3.946 17 H 0.102 0.898 18 N -0.364 5.364 19 C 0.339 3.661 20 O -0.413 6.413 21 C -0.131 4.131 22 C -0.094 4.094 23 C -0.117 4.117 24 C 0.019 3.981 25 N -0.186 5.186 26 C -0.035 4.035 27 C -0.202 4.202 28 C -0.071 4.071 29 C -0.115 4.115 30 C -0.048 4.048 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.229 0.771 42 H 0.152 0.848 43 H 0.159 0.841 44 H 0.178 0.822 45 H 0.157 0.843 46 H 0.161 0.839 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.190 6.476 20.381 25.664 hybrid contribution 0.818 0.012 -0.343 0.887 sum -13.372 6.488 20.038 24.948 Atomic orbital electron populations 1.21778 0.95769 1.01646 1.00841 1.21978 0.94521 1.00621 0.96461 0.91021 1.20887 0.85996 0.96643 0.93714 1.44099 0.99273 1.71465 1.16624 1.19124 0.98260 1.12395 1.08679 0.91671 1.25051 0.99927 0.95350 0.99285 1.70025 1.22023 1.14523 1.47929 0.86372 0.81092 0.79103 0.80199 1.21062 1.21646 1.20875 1.20766 0.99477 0.93097 0.81948 1.22587 0.93763 1.01603 1.00838 1.21115 0.94634 0.96923 0.81939 0.89833 1.46232 1.65482 1.14220 1.10514 1.18139 0.78354 0.86503 0.83066 1.90794 1.50115 1.15749 1.84638 1.20102 1.03631 0.94517 0.94811 1.20991 0.96227 0.93254 0.98942 1.20675 1.00067 1.00626 0.90324 1.19007 0.95703 0.90101 0.93254 1.68080 1.13349 1.38172 0.99036 1.23043 0.93309 0.91918 0.95188 1.21910 1.01885 0.96153 1.00237 1.21597 0.93908 1.00315 0.91294 1.18819 1.02647 0.94907 0.95144 1.21476 0.93014 1.00304 0.89989 0.93508 0.92667 0.92846 0.92365 0.96158 0.93514 0.89183 0.96116 0.92611 0.92752 0.77101 0.84807 0.84128 0.82246 0.84264 0.83949 0.83599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.03 37.16 0.34 -1.51 16 2 C -0.11 -1.85 2.46 -90.50 -0.22 -2.08 16 3 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.15 3.13 5.80 -3.71 -0.02 3.11 16 5 N -0.59 -14.62 2.99 -172.32 -0.52 -15.14 16 6 C -0.26 -6.90 9.59 -15.06 -0.14 -7.05 16 7 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 8 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 9 N -0.90 -26.21 11.19 55.49 0.62 -25.59 16 10 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.17 4.19 5.31 -3.71 -0.02 4.17 16 15 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 16 C 0.16 2.67 1.88 -67.88 -0.13 2.55 16 17 H 0.08 1.61 7.57 -51.93 -0.39 1.22 16 18 N -0.71 -9.85 4.31 -54.73 -0.24 -10.09 16 19 C 0.55 8.22 7.73 -12.37 -0.10 8.12 16 20 O -0.53 -9.96 15.97 5.31 0.08 -9.88 16 21 C -0.13 -1.53 5.87 -104.98 -0.62 -2.14 16 22 C -0.07 -0.71 9.44 -39.59 -0.37 -1.09 16 23 C -0.10 -0.96 9.95 -39.54 -0.39 -1.35 16 24 C 0.14 1.53 6.61 -84.78 -0.56 0.97 16 25 N -0.48 -4.97 10.33 -10.92 -0.11 -5.09 16 26 C 0.14 1.03 11.14 -17.46 -0.19 0.83 16 27 C -0.18 -1.15 10.03 -39.78 -0.40 -1.55 16 28 C -0.05 -0.35 9.89 -39.18 -0.39 -0.74 16 29 C -0.11 -1.17 5.74 -106.82 -0.61 -1.78 16 30 C -0.03 -0.32 9.35 -38.74 -0.36 -0.68 16 31 H 0.05 0.52 7.36 -51.93 -0.38 0.14 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 1.09 8.14 -51.92 -0.42 0.66 16 41 H 0.39 4.29 6.30 -40.82 -0.26 4.03 16 42 H 0.13 0.98 6.35 -52.49 -0.33 0.65 16 43 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16 45 H 0.14 0.46 8.06 -52.48 -0.42 0.03 16 46 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.15 1.60 7.62 -52.49 -0.40 1.20 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -33.12 380.65 -10.57 -43.69 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.69 Total: 3.09 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -4.43 Total: -3.29 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.24 Total: -55.91 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.12 -10.57 -43.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942595284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.895 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds