Wall clock time and date at job start Tue Mar 31 2020 22:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.52734 * 2 1 4 4 C 1.53194 * 109.49976 * 239.91641 * 2 1 3 5 5 N 1.46923 * 108.77656 * 185.41901 * 4 2 1 6 6 C 1.36937 * 120.62611 * 233.58705 * 5 4 2 7 7 H 1.07997 * 120.00476 * 27.69784 * 6 5 4 8 8 C 1.38818 * 119.99862 * 207.69594 * 6 5 4 9 9 N 1.31615 * 120.00121 * 17.35098 * 8 6 5 10 10 Si 1.86801 * 119.99912 * 197.35549 * 8 6 5 11 11 H 1.48497 * 109.47173 * 60.00013 * 10 8 6 12 12 H 1.48503 * 109.47174 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47092 * 299.99890 * 10 8 6 14 14 C 1.46931 * 118.74490 * 53.60541 * 5 4 2 15 15 C 1.53188 * 108.76999 * 306.39420 * 14 5 4 16 16 C 1.53043 * 109.31509 * 54.63605 * 15 14 5 17 17 H 1.08995 * 109.46307 * 58.64068 * 16 15 14 18 18 N 1.46508 * 109.46061 * 178.61283 * 16 15 14 19 19 C 1.34772 * 119.99643 * 274.99715 * 18 16 15 20 20 O 1.21565 * 120.00274 * 0.02562 * 19 18 16 21 21 C 1.47769 * 119.99980 * 179.97438 * 19 18 16 22 22 C 1.40635 * 119.80303 * 0.02562 * 21 19 18 23 23 C 1.35700 * 120.91991 * 180.02562 * 22 21 19 24 24 C 1.40759 * 120.11416 * 0.02562 * 23 22 21 25 25 N 1.33652 * 120.82996 * 179.97438 * 24 23 22 26 26 C 1.31120 * 121.38647 * 180.02562 * 25 24 23 27 27 C 1.39310 * 121.77458 * 359.97188 * 26 25 24 28 28 C 1.36580 * 119.90374 * 0.03191 * 27 26 25 29 29 C 1.40885 * 118.15712 * 359.97438 * 28 27 26 30 30 C 1.38552 * 119.80884 * 180.31975 * 21 19 18 31 31 H 1.08997 * 109.46879 * 299.92455 * 1 2 3 32 32 H 1.08999 * 109.46732 * 59.92545 * 1 2 3 33 33 H 1.09000 * 109.46833 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.58883 * 65.62723 * 4 2 1 35 35 H 1.09001 * 109.70005 * 305.26742 * 4 2 1 36 36 H 0.97004 * 120.00424 * 179.97438 * 9 8 6 37 37 H 1.08993 * 109.58728 * 186.60792 * 14 5 4 38 38 H 1.08997 * 109.58446 * 66.18073 * 14 5 4 39 39 H 1.09003 * 109.50102 * 294.68153 * 15 14 5 40 40 H 1.09009 * 109.52073 * 174.59954 * 15 14 5 41 41 H 0.96993 * 120.00157 * 94.99355 * 18 16 15 42 42 H 1.07994 * 119.53837 * 0.02562 * 22 21 19 43 43 H 1.08002 * 119.93786 * 180.02562 * 23 22 21 44 44 H 1.08011 * 119.10962 * 179.97438 * 26 25 24 45 45 H 1.08006 * 120.04908 * 180.02562 * 27 26 25 46 46 H 1.07998 * 120.91578 * 179.97438 * 28 27 26 47 47 H 1.07999 * 120.29476 * 359.73050 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5046 -0.8293 -1.1695 6 6 4.2936 -0.3795 -2.1943 7 1 3.9469 0.4204 -2.8318 8 6 5.5391 -0.9517 -2.4140 9 7 5.8279 -2.1222 -1.8861 10 14 6.8054 -0.0602 -3.4586 11 1 7.1181 1.2545 -2.8428 12 1 8.0438 -0.8758 -3.5387 13 1 6.2612 0.1498 -4.8243 14 6 4.1053 -1.4268 0.0309 15 6 3.5708 -0.6950 1.2660 16 6 2.0408 -0.7231 1.2484 17 1 1.6967 -1.7572 1.2352 18 7 1.5264 -0.0528 2.4453 19 6 1.3971 -0.7384 3.5984 20 8 1.7076 -1.9128 3.6455 21 6 0.8789 -0.0623 4.8058 22 6 0.5214 1.2966 4.7469 23 6 0.0436 1.9400 5.8420 24 6 -0.1005 1.2494 7.0600 25 7 -0.5691 1.8691 8.1475 26 6 -0.7073 1.2366 9.2877 27 6 -0.3749 -0.1093 9.4249 28 6 0.1099 -0.8036 8.3534 29 6 0.2571 -0.1206 7.1300 30 6 0.7537 -0.7692 5.9909 31 1 -0.3633 0.5127 0.8906 32 1 -0.3633 0.5150 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7639 -0.1581 -2.1389 35 1 1.6054 -1.7216 -1.3004 36 1 6.6981 -2.5223 -2.0399 37 1 5.1896 -1.3247 -0.0136 38 1 3.8376 -2.4819 0.0869 39 1 3.9159 0.3389 1.2541 40 1 3.9334 -1.1892 2.1675 41 1 1.2791 0.8843 2.4079 42 1 0.6286 1.8355 3.8172 43 1 -0.2265 2.9838 5.7788 44 1 -1.0892 1.7735 10.1436 45 1 -0.5003 -0.6030 10.3773 46 1 0.3732 -1.8473 8.4415 47 1 1.0291 -1.8126 6.0345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942595284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:35 Heat of formation + Delta-G solvation = 16.174402 kcal Electronic energy + Delta-G solvation = -28621.477630 eV Core-core repulsion = 24768.411233 eV Total energy + Delta-G solvation = -3853.066397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.97520 -41.03339 -39.31120 -37.69071 -36.25621 -34.56417 -34.23243 -32.94180 -32.22450 -31.16561 -31.00662 -27.42151 -27.18753 -25.63776 -24.86935 -23.86914 -23.07171 -22.64939 -21.91289 -21.03989 -19.34659 -18.90027 -18.57604 -17.97818 -17.11173 -16.89103 -16.69093 -16.12487 -15.63405 -15.60116 -15.52895 -15.35239 -15.11469 -14.97778 -14.70960 -14.55659 -14.44174 -14.22227 -13.99644 -13.59673 -13.12232 -13.06592 -13.00939 -12.73579 -12.69809 -12.57439 -12.47278 -12.33410 -12.08253 -12.04955 -11.67546 -11.61367 -11.58545 -11.33338 -10.99695 -10.56412 -10.52916 -10.11111 -9.81918 -9.34752 -8.72098 -7.87676 -5.33643 -0.82136 -0.35351 0.85935 1.39756 1.47360 1.50152 1.56784 2.06487 2.28716 2.51367 3.07401 3.26189 3.27953 3.54298 3.56614 3.66342 3.71156 3.77119 3.95660 3.99696 4.02943 4.04319 4.15509 4.29290 4.37701 4.51045 4.59782 4.70384 4.71885 4.77343 4.85309 4.86585 4.89514 4.95693 5.01191 5.02069 5.10411 5.13519 5.18033 5.26593 5.29581 5.38514 5.46579 5.51123 5.52916 5.63315 5.69160 5.74550 6.37558 6.51882 6.87069 7.12573 7.17351 7.83611 8.36426 9.19212 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023817 B = 0.002203 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.372813 B =12708.536395 C =12953.641705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.100 4.100 3 H 0.082 0.918 4 C 0.149 3.851 5 N -0.609 5.609 6 C -0.261 4.261 7 H 0.074 0.926 8 C -0.055 4.055 9 N -0.938 5.938 10 Si 0.969 3.031 11 H -0.277 1.277 12 H -0.298 1.298 13 H -0.273 1.273 14 C 0.183 3.817 15 C -0.132 4.132 16 C 0.169 3.831 17 H 0.058 0.942 18 N -0.700 5.700 19 C 0.554 3.446 20 O -0.581 6.581 21 C -0.144 4.144 22 C -0.071 4.071 23 C -0.101 4.101 24 C 0.124 3.876 25 N -0.507 5.507 26 C 0.139 3.861 27 C -0.171 4.171 28 C -0.055 4.055 29 C -0.130 4.130 30 C -0.031 4.031 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.009 0.991 36 H 0.249 0.751 37 H 0.056 0.944 38 H -0.011 1.011 39 H 0.062 0.938 40 H 0.046 0.954 41 H 0.413 0.587 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.194 0.806 45 H 0.177 0.823 46 H 0.162 0.838 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.342 9.109 22.413 29.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.120 4.120 3 H 0.101 0.899 4 C 0.023 3.977 5 N -0.332 5.332 6 C -0.391 4.391 7 H 0.091 0.909 8 C -0.250 4.250 9 N -0.584 5.584 10 Si 0.797 3.203 11 H -0.203 1.203 12 H -0.224 1.224 13 H -0.198 1.198 14 C 0.056 3.944 15 C -0.173 4.173 16 C 0.065 3.935 17 H 0.076 0.924 18 N -0.351 5.351 19 C 0.343 3.657 20 O -0.462 6.462 21 C -0.147 4.147 22 C -0.091 4.091 23 C -0.120 4.120 24 C 0.003 3.997 25 N -0.216 5.216 26 C -0.033 4.033 27 C -0.190 4.190 28 C -0.081 4.081 29 C -0.132 4.132 30 C -0.051 4.051 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.027 0.973 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.007 0.993 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.251 0.749 42 H 0.176 0.824 43 H 0.175 0.825 44 H 0.210 0.790 45 H 0.194 0.806 46 H 0.180 0.820 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.186 9.111 22.186 28.935 hybrid contribution 1.336 -0.832 -0.724 1.733 sum -14.850 8.279 21.462 27.380 Atomic orbital electron populations 1.21727 0.92694 1.01891 1.02961 1.21771 0.96871 0.99980 0.93415 0.89947 1.21086 0.83453 0.96791 0.96347 1.44344 1.01146 1.71407 1.16300 1.19524 0.98700 1.12163 1.08753 0.90851 1.25869 1.01963 0.96035 1.01119 1.70202 1.22054 1.16210 1.49942 0.85312 0.78186 0.77823 0.78957 1.20259 1.22420 1.19826 1.20470 0.97714 0.92075 0.84142 1.22334 0.95987 1.00915 0.98021 1.20708 0.92528 0.96338 0.83942 0.92375 1.45907 1.64979 1.14957 1.09246 1.18588 0.77325 0.85969 0.83820 1.90773 1.52160 1.17877 1.85368 1.19893 1.05637 0.95648 0.93560 1.21115 0.95766 0.92119 1.00058 1.20903 0.99693 1.01367 0.89999 1.19304 0.95936 0.90468 0.94041 1.68137 1.14692 1.38935 0.99799 1.23745 0.91590 0.92698 0.95217 1.22324 0.99822 0.95695 1.01197 1.21940 0.93908 1.01447 0.90814 1.18972 1.03265 0.95184 0.95761 1.21538 0.92932 1.00164 0.90474 0.90963 0.90987 0.93595 0.91546 0.97265 0.94176 0.92531 0.99316 0.91904 0.93547 0.74895 0.82415 0.82486 0.78958 0.80599 0.82032 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.03 71.98 0.65 -2.49 16 2 C -0.10 -3.08 2.46 -10.71 -0.03 -3.10 16 3 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.15 6.02 5.80 86.36 0.50 6.53 16 5 N -0.61 -30.75 2.99 -699.11 -2.09 -32.85 16 6 C -0.26 -14.30 9.59 84.03 0.81 -13.49 16 7 H 0.07 3.82 7.89 -2.91 -0.02 3.80 16 8 C -0.05 -3.09 4.91 84.86 0.42 -2.67 16 9 N -0.94 -56.89 11.19 21.65 0.24 -56.65 16 10 Si 0.97 45.04 29.59 68.60 2.03 47.07 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 12 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 14 C 0.18 9.30 5.31 86.36 0.46 9.75 16 15 C -0.13 -5.37 5.65 30.67 0.17 -5.20 16 16 C 0.17 5.77 1.88 45.02 0.08 5.85 16 17 H 0.06 2.32 7.57 -2.39 -0.02 2.30 16 18 N -0.70 -18.54 4.31 -445.33 -1.92 -20.46 16 19 C 0.55 16.48 7.73 86.76 0.67 17.15 16 20 O -0.58 -22.44 15.97 -3.92 -0.06 -22.50 16 21 C -0.14 -3.38 5.87 -20.10 -0.12 -3.50 16 22 C -0.07 -1.24 9.44 22.27 0.21 -1.03 16 23 C -0.10 -1.80 9.95 22.30 0.22 -1.58 16 24 C 0.12 2.52 6.61 40.35 0.27 2.78 16 25 N -0.51 -9.49 10.33 -188.45 -1.95 -11.44 16 26 C 0.14 1.64 11.14 85.06 0.95 2.59 16 27 C -0.17 -1.60 10.03 22.14 0.22 -1.38 16 28 C -0.06 -0.75 9.89 22.53 0.22 -0.53 16 29 C -0.13 -2.55 5.74 -21.29 -0.12 -2.67 16 30 C -0.03 -0.70 9.35 22.82 0.21 -0.49 16 31 H 0.07 1.34 7.36 -2.39 -0.02 1.33 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 35 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 37 H 0.06 3.24 6.04 -2.39 -0.01 3.23 16 38 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 39 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.41 7.88 6.30 -92.71 -0.58 7.30 16 42 H 0.16 1.84 6.35 -2.91 -0.02 1.82 16 43 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 44 H 0.19 0.82 8.06 -2.90 -0.02 0.80 16 45 H 0.18 0.32 8.06 -2.91 -0.02 0.30 16 46 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 47 H 0.14 3.19 7.62 -2.91 -0.02 3.17 16 Total: -1.00 -76.08 380.65 2.45 -73.63 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.40 Total: 16.65 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 5.80 Total: 6.53 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -5.72 Total: -121.39 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.06 Total: -22.50 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -76.08 2.45 -73.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942595284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.803 kcal (2) G-P(sol) polarization free energy of solvation -76.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds