Wall clock time and date at job start Tue Mar 31 2020 22:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.49207 * 2 1 4 4 C 1.53187 * 109.52509 * 120.08010 * 2 1 3 5 5 N 1.46925 * 108.77416 * 174.60413 * 4 2 1 6 6 C 1.36940 * 120.63007 * 126.37243 * 5 4 2 7 7 H 1.08000 * 119.99981 * 207.68115 * 6 5 4 8 8 C 1.38814 * 120.00254 * 27.68213 * 6 5 4 9 9 N 1.31612 * 119.99870 * 17.37033 * 8 6 5 10 10 Si 1.86798 * 119.99883 * 197.37302 * 8 6 5 11 11 H 1.48494 * 109.47425 * 0.02562 * 10 8 6 12 12 H 1.48509 * 109.47027 * 119.99908 * 10 8 6 13 13 H 1.48497 * 109.47057 * 239.99523 * 10 8 6 14 14 C 1.46928 * 118.74145 * 306.38880 * 5 4 2 15 15 C 1.53191 * 108.76794 * 53.60971 * 14 5 4 16 16 C 1.53034 * 109.49698 * 239.93849 * 2 1 3 17 17 H 1.08993 * 109.46274 * 58.64143 * 16 2 1 18 18 N 1.46502 * 109.46048 * 298.66912 * 16 2 1 19 19 C 1.34770 * 120.00352 * 155.00262 * 18 16 2 20 20 O 1.21562 * 119.99949 * 359.97438 * 19 18 16 21 21 C 1.47767 * 120.00324 * 179.97438 * 19 18 16 22 22 C 1.40631 * 119.80330 * 0.02562 * 21 19 18 23 23 C 1.35697 * 120.92401 * 180.27315 * 22 21 19 24 24 C 1.40759 * 120.10928 * 359.50010 * 23 22 21 25 25 N 1.33652 * 120.83122 * 180.19888 * 24 23 22 26 26 C 1.31123 * 121.39320 * 180.29164 * 25 24 23 27 27 C 1.39316 * 121.77181 * 0.02562 * 26 25 24 28 28 C 1.36576 * 119.90132 * 359.93912 * 27 26 25 29 29 C 1.40892 * 118.16202 * 0.08244 * 28 27 26 30 30 C 1.38546 * 119.80817 * 180.02562 * 21 19 18 31 31 H 1.09005 * 109.46853 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46863 * 300.06272 * 1 2 3 33 33 H 1.08994 * 109.47252 * 60.06073 * 1 2 3 34 34 H 1.09008 * 109.58979 * 294.38915 * 4 2 1 35 35 H 1.08998 * 109.58994 * 54.67135 * 4 2 1 36 36 H 0.97002 * 120.00099 * 180.02562 * 9 8 6 37 37 H 1.08997 * 109.58894 * 173.39644 * 14 5 4 38 38 H 1.08997 * 109.58472 * 293.82573 * 14 5 4 39 39 H 1.09005 * 109.49578 * 185.41204 * 15 14 5 40 40 H 1.08999 * 109.50158 * 65.32151 * 15 14 5 41 41 H 0.97005 * 119.99790 * 335.00041 * 18 16 2 42 42 H 1.08006 * 119.54018 * 359.97438 * 22 21 19 43 43 H 1.07997 * 119.94943 * 179.74432 * 23 22 21 44 44 H 1.07999 * 119.11357 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.04674 * 179.97438 * 27 26 25 46 46 H 1.08007 * 120.92198 * 180.02562 * 28 27 26 47 47 H 1.07998 * 120.29783 * 359.95250 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7236 1.2493 5 7 3.5053 -0.8282 1.1689 6 6 4.2944 -0.3773 2.1933 7 1 5.2994 -0.0374 1.9913 8 6 3.8026 -0.3572 3.4912 9 7 2.7398 -1.0680 3.8032 10 14 4.6491 0.6788 4.7948 11 1 5.8122 1.3787 4.1927 12 1 3.6920 1.6805 5.3297 13 1 5.1156 -0.1985 5.8983 14 6 4.1060 -1.4254 -0.0316 15 6 3.5708 -0.6938 -1.2666 16 6 2.0408 -0.7226 -1.2485 17 1 1.6579 -0.2240 -2.1389 18 7 1.5790 -2.1129 -1.2311 19 6 1.4509 -2.7950 -2.3863 20 8 1.7181 -2.2566 -3.4429 21 6 0.9857 -4.1974 -2.3686 22 6 0.6772 -4.8161 -1.1439 23 6 0.2534 -6.1045 -1.1008 24 6 0.1063 -6.8397 -2.2921 25 7 -0.3139 -8.1082 -2.2667 26 6 -0.4494 -8.8051 -3.3691 27 6 -0.1632 -8.2623 -4.6198 28 6 0.2701 -6.9708 -4.7186 29 6 0.4149 -6.2254 -3.5319 30 6 0.8560 -4.8951 -3.5585 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8895 33 1 -0.3633 0.5129 -0.8905 34 1 1.7645 -0.1580 2.1389 35 1 1.6045 -1.7207 1.2992 36 1 2.3958 -1.0536 4.7101 37 1 5.1903 -1.3228 0.0126 38 1 3.8388 -2.4806 -0.0876 39 1 3.9334 -1.1882 -2.1679 40 1 3.9154 0.3402 -1.2547 41 1 1.3655 -2.5424 -0.3879 42 1 0.7836 -4.2596 -0.2245 43 1 0.0247 -6.5653 -0.1512 44 1 -0.7921 -9.8273 -3.3058 45 1 -0.2843 -8.8617 -5.5100 46 1 0.4963 -6.5333 -5.6798 47 1 1.0925 -4.4183 -4.4982 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942595285.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:40 Heat of formation + Delta-G solvation = 37.529556 kcal Electronic energy + Delta-G solvation = -29282.285573 eV Core-core repulsion = 25430.145205 eV Total energy + Delta-G solvation = -3852.140368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.10475 -39.90419 -37.89680 -36.68681 -34.31160 -33.73655 -32.40097 -31.87531 -30.83347 -30.25628 -29.41552 -26.04144 -25.55456 -24.65745 -24.05460 -22.51096 -22.04936 -21.21991 -20.82257 -18.72182 -18.47714 -17.91554 -17.09499 -16.75778 -16.04777 -15.38379 -15.00134 -14.91365 -14.66181 -14.50653 -14.27916 -13.92183 -13.83610 -13.68433 -13.58605 -13.32561 -13.26410 -13.06653 -12.66537 -12.26234 -12.07747 -11.79509 -11.63501 -11.47046 -11.24428 -11.05707 -10.96712 -10.84929 -10.74708 -10.38629 -10.17473 -9.98617 -9.86909 -9.77366 -9.70352 -9.45705 -9.06347 -8.70530 -8.52425 -8.43893 -6.72675 -5.84686 -3.26096 0.02521 0.45263 1.69908 2.31939 3.32320 3.34026 3.38416 3.42836 3.44800 3.93601 4.00935 4.33452 4.43073 4.45703 4.58354 4.69813 4.81023 4.93466 4.98682 5.21061 5.25690 5.27909 5.40741 5.52004 5.53706 5.62764 5.66256 5.72652 5.80291 5.81986 6.04231 6.06574 6.11330 6.12602 6.17447 6.24866 6.31388 6.43222 6.51089 6.51730 6.54343 6.62329 6.75965 6.89564 6.97217 7.23831 7.54195 7.62890 7.75039 7.78937 8.39181 8.40160 9.15746 9.78910 10.35089 11.23818 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.002750 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.236649 B =10179.512874 C =10940.982523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 H 0.079 0.921 4 C 0.178 3.822 5 N -0.592 5.592 6 C -0.251 4.251 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.903 5.903 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.291 1.291 14 C 0.147 3.853 15 C -0.146 4.146 16 C 0.160 3.840 17 H 0.075 0.925 18 N -0.703 5.703 19 C 0.555 3.445 20 O -0.547 6.547 21 C -0.125 4.125 22 C -0.072 4.072 23 C -0.096 4.096 24 C 0.142 3.858 25 N -0.476 5.476 26 C 0.136 3.864 27 C -0.183 4.183 28 C -0.046 4.046 29 C -0.114 4.114 30 C -0.031 4.031 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.092 0.908 35 H 0.014 0.986 36 H 0.253 0.747 37 H 0.053 0.947 38 H 0.017 0.983 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.403 0.597 42 H 0.137 0.863 43 H 0.142 0.858 44 H 0.160 0.840 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.025 -10.791 -15.042 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 H 0.098 0.902 4 C 0.052 3.948 5 N -0.314 5.314 6 C -0.380 4.380 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.218 1.218 14 C 0.021 3.979 15 C -0.186 4.186 16 C 0.056 3.944 17 H 0.093 0.907 18 N -0.354 5.354 19 C 0.342 3.658 20 O -0.426 6.426 21 C -0.128 4.128 22 C -0.092 4.092 23 C -0.115 4.115 24 C 0.020 3.980 25 N -0.184 5.184 26 C -0.036 4.036 27 C -0.203 4.203 28 C -0.072 4.072 29 C -0.116 4.116 30 C -0.051 4.051 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.241 0.759 42 H 0.155 0.845 43 H 0.160 0.840 44 H 0.177 0.823 45 H 0.156 0.844 46 H 0.159 0.841 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.043 -10.672 -14.696 19.863 hybrid contribution 0.488 0.573 0.346 0.829 sum -7.554 -10.099 -14.350 19.105 Atomic orbital electron populations 1.21728 0.95824 1.01227 1.00952 1.22143 0.94771 1.00847 0.97138 0.90242 1.20788 0.83205 0.96497 0.94336 1.44066 1.01589 1.69515 1.16236 1.19226 0.97749 1.35261 0.85781 0.91627 1.25010 0.98552 0.99090 0.96946 1.70015 1.25706 1.40259 1.18743 0.86243 0.78930 0.80033 0.81694 1.20285 1.21563 1.21757 1.20865 0.96574 0.94081 0.86390 1.22388 0.94976 1.01795 0.99432 1.20937 0.94405 0.80374 0.98692 0.90740 1.46119 1.66225 1.14406 1.08679 1.18123 0.77908 0.85492 0.84311 1.90738 1.51373 1.69871 1.30655 1.20077 1.03764 0.94934 0.94047 1.21082 0.95775 0.94879 0.97463 1.20708 0.99919 0.93541 0.97328 1.19019 0.95861 0.90469 0.92628 1.68081 1.12941 1.06137 1.31276 1.23030 0.93289 0.99636 0.87687 1.21886 1.02343 0.96473 0.99594 1.21562 0.94017 0.93904 0.97746 1.18808 1.03035 0.95364 0.94381 1.21415 0.93437 0.91645 0.98569 0.93226 0.92530 0.93642 0.89014 0.96811 0.93680 0.92873 0.96544 0.92519 0.91330 0.75911 0.84510 0.83988 0.82318 0.84382 0.84094 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.06 37.16 0.34 -1.76 16 2 C -0.13 -2.25 2.67 -90.50 -0.24 -2.49 16 3 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 4 C 0.18 3.85 4.30 -3.71 -0.02 3.83 16 5 N -0.59 -13.98 2.99 -172.32 -0.52 -14.50 16 6 C -0.25 -6.63 9.58 -15.06 -0.14 -6.77 16 7 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 8 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 9 N -0.90 -24.95 11.19 55.49 0.62 -24.33 16 10 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.15 3.02 6.26 -3.71 -0.02 3.00 16 15 C -0.15 -2.61 5.77 -26.61 -0.15 -2.76 16 16 C 0.16 2.70 2.21 -67.89 -0.15 2.55 16 17 H 0.07 1.27 7.58 -51.93 -0.39 0.88 16 18 N -0.70 -11.05 3.55 -54.74 -0.19 -11.25 16 19 C 0.55 8.78 7.73 -12.37 -0.10 8.69 16 20 O -0.55 -10.00 15.97 5.31 0.08 -9.92 16 21 C -0.13 -1.70 5.87 -104.99 -0.62 -2.32 16 22 C -0.07 -0.89 9.44 -39.59 -0.37 -1.27 16 23 C -0.10 -1.17 9.95 -39.54 -0.39 -1.56 16 24 C 0.14 1.77 6.61 -84.78 -0.56 1.21 16 25 N -0.48 -5.66 10.33 -10.92 -0.11 -5.77 16 26 C 0.14 1.17 11.15 -17.45 -0.19 0.98 16 27 C -0.18 -1.33 10.03 -39.78 -0.40 -1.73 16 28 C -0.05 -0.40 9.89 -39.18 -0.39 -0.79 16 29 C -0.11 -1.31 5.74 -106.82 -0.61 -1.92 16 30 C -0.03 -0.38 9.35 -38.74 -0.36 -0.74 16 31 H 0.05 0.72 7.54 -51.93 -0.39 0.32 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 2.28 6.04 -51.92 -0.31 1.97 16 35 H 0.01 0.31 6.65 -51.93 -0.35 -0.04 16 36 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16 38 H 0.02 0.34 7.74 -51.93 -0.40 -0.06 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.40 6.21 4.72 -40.82 -0.19 6.02 16 42 H 0.14 1.60 6.35 -52.48 -0.33 1.27 16 43 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 44 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 46 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 47 H 0.14 1.65 7.62 -52.49 -0.40 1.25 16 LS Contribution 376.72 15.07 5.68 5.68 Total: -1.00 -31.11 376.72 -10.48 -41.58 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.54 Total: 6.24 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -4.47 Total: -3.87 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.20 Total: -55.85 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.11 -10.48 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942595285.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.115 kcal (2) G-P(sol) polarization free energy of solvation -31.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds