Wall clock time and date at job start Tue Mar 31 2020 22:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.49207 * 2 1 4 4 C 1.53187 * 109.52509 * 120.08010 * 2 1 3 5 5 N 1.46925 * 108.77416 * 174.60413 * 4 2 1 6 6 C 1.36940 * 120.63007 * 126.37243 * 5 4 2 7 7 H 1.08000 * 119.99981 * 207.68115 * 6 5 4 8 8 C 1.38814 * 120.00254 * 27.68213 * 6 5 4 9 9 N 1.31612 * 119.99870 * 17.37033 * 8 6 5 10 10 Si 1.86798 * 119.99883 * 197.37302 * 8 6 5 11 11 H 1.48494 * 109.47425 * 0.02562 * 10 8 6 12 12 H 1.48509 * 109.47027 * 119.99908 * 10 8 6 13 13 H 1.48497 * 109.47057 * 239.99523 * 10 8 6 14 14 C 1.46928 * 118.74145 * 306.38880 * 5 4 2 15 15 C 1.53191 * 108.76794 * 53.60971 * 14 5 4 16 16 C 1.53034 * 109.49698 * 239.93849 * 2 1 3 17 17 H 1.08993 * 109.46274 * 58.64143 * 16 2 1 18 18 N 1.46502 * 109.46048 * 298.66912 * 16 2 1 19 19 C 1.34770 * 120.00352 * 155.00262 * 18 16 2 20 20 O 1.21562 * 119.99949 * 359.97438 * 19 18 16 21 21 C 1.47767 * 120.00324 * 179.97438 * 19 18 16 22 22 C 1.40631 * 119.80330 * 0.02562 * 21 19 18 23 23 C 1.35697 * 120.92401 * 180.27315 * 22 21 19 24 24 C 1.40759 * 120.10928 * 359.50010 * 23 22 21 25 25 N 1.33652 * 120.83122 * 180.19888 * 24 23 22 26 26 C 1.31123 * 121.39320 * 180.29164 * 25 24 23 27 27 C 1.39316 * 121.77181 * 0.02562 * 26 25 24 28 28 C 1.36576 * 119.90132 * 359.93912 * 27 26 25 29 29 C 1.40892 * 118.16202 * 0.08244 * 28 27 26 30 30 C 1.38546 * 119.80817 * 180.02562 * 21 19 18 31 31 H 1.09005 * 109.46853 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46863 * 300.06272 * 1 2 3 33 33 H 1.08994 * 109.47252 * 60.06073 * 1 2 3 34 34 H 1.09008 * 109.58979 * 294.38915 * 4 2 1 35 35 H 1.08998 * 109.58994 * 54.67135 * 4 2 1 36 36 H 0.97002 * 120.00099 * 180.02562 * 9 8 6 37 37 H 1.08997 * 109.58894 * 173.39644 * 14 5 4 38 38 H 1.08997 * 109.58472 * 293.82573 * 14 5 4 39 39 H 1.09005 * 109.49578 * 185.41204 * 15 14 5 40 40 H 1.08999 * 109.50158 * 65.32151 * 15 14 5 41 41 H 0.97005 * 119.99790 * 335.00041 * 18 16 2 42 42 H 1.08006 * 119.54018 * 359.97438 * 22 21 19 43 43 H 1.07997 * 119.94943 * 179.74432 * 23 22 21 44 44 H 1.07999 * 119.11357 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.04674 * 179.97438 * 27 26 25 46 46 H 1.08007 * 120.92198 * 180.02562 * 28 27 26 47 47 H 1.07998 * 120.29783 * 359.95250 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7236 1.2493 5 7 3.5053 -0.8282 1.1689 6 6 4.2944 -0.3773 2.1933 7 1 5.2994 -0.0374 1.9913 8 6 3.8026 -0.3572 3.4912 9 7 2.7398 -1.0680 3.8032 10 14 4.6491 0.6788 4.7948 11 1 5.8122 1.3787 4.1927 12 1 3.6920 1.6805 5.3297 13 1 5.1156 -0.1985 5.8983 14 6 4.1060 -1.4254 -0.0316 15 6 3.5708 -0.6938 -1.2666 16 6 2.0408 -0.7226 -1.2485 17 1 1.6579 -0.2240 -2.1389 18 7 1.5790 -2.1129 -1.2311 19 6 1.4509 -2.7950 -2.3863 20 8 1.7181 -2.2566 -3.4429 21 6 0.9857 -4.1974 -2.3686 22 6 0.6772 -4.8161 -1.1439 23 6 0.2534 -6.1045 -1.1008 24 6 0.1063 -6.8397 -2.2921 25 7 -0.3139 -8.1082 -2.2667 26 6 -0.4494 -8.8051 -3.3691 27 6 -0.1632 -8.2623 -4.6198 28 6 0.2701 -6.9708 -4.7186 29 6 0.4149 -6.2254 -3.5319 30 6 0.8560 -4.8951 -3.5585 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8895 33 1 -0.3633 0.5129 -0.8905 34 1 1.7645 -0.1580 2.1389 35 1 1.6045 -1.7207 1.2992 36 1 2.3958 -1.0536 4.7101 37 1 5.1903 -1.3228 0.0126 38 1 3.8388 -2.4806 -0.0876 39 1 3.9334 -1.1882 -2.1679 40 1 3.9154 0.3402 -1.2547 41 1 1.3655 -2.5424 -0.3879 42 1 0.7836 -4.2596 -0.2245 43 1 0.0247 -6.5653 -0.1512 44 1 -0.7921 -9.8273 -3.3058 45 1 -0.2843 -8.8617 -5.5100 46 1 0.4963 -6.5333 -5.6798 47 1 1.0925 -4.4183 -4.4982 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942595285.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:39 Heat of formation + Delta-G solvation = 20.538363 kcal Electronic energy + Delta-G solvation = -29283.022366 eV Core-core repulsion = 25430.145205 eV Total energy + Delta-G solvation = -3852.877161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.99094 -41.12798 -39.28705 -37.67654 -35.96977 -34.53672 -33.82085 -33.53397 -31.99172 -31.13177 -30.88149 -27.53638 -27.19575 -25.77305 -24.87185 -23.89719 -23.14404 -22.67054 -22.12650 -20.17497 -19.54520 -18.91322 -18.62419 -17.82529 -17.02633 -16.78816 -16.59401 -16.24045 -15.73730 -15.51761 -15.49376 -15.24883 -15.17969 -14.97553 -14.72017 -14.62331 -14.45133 -14.24816 -13.98138 -13.60335 -13.10557 -13.07376 -12.94507 -12.79974 -12.69773 -12.57176 -12.49027 -12.46318 -12.14986 -11.79634 -11.70612 -11.61068 -11.47879 -11.14614 -11.01987 -10.54629 -10.51073 -10.08469 -9.81539 -9.35105 -8.66080 -7.86858 -5.30513 -0.80770 -0.36095 0.87344 1.39589 1.46061 1.49429 1.58597 2.14792 2.30323 2.51746 3.07536 3.25779 3.27889 3.53954 3.59082 3.68290 3.71744 3.84619 3.95678 4.00543 4.04583 4.04865 4.17715 4.28921 4.34502 4.52219 4.58216 4.66558 4.73046 4.75662 4.82756 4.87900 4.95166 4.96808 5.00988 5.03084 5.09247 5.14055 5.18749 5.25287 5.30122 5.35026 5.46692 5.51410 5.59063 5.66501 5.74824 5.76882 6.40349 6.51237 6.88851 7.14499 7.16627 7.86320 8.37752 9.18911 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.002750 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.236649 B =10179.512874 C =10940.982523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.074 0.926 4 C 0.187 3.813 5 N -0.607 5.607 6 C -0.261 4.261 7 H 0.062 0.938 8 C -0.044 4.044 9 N -0.927 5.927 10 Si 0.961 3.039 11 H -0.271 1.271 12 H -0.289 1.289 13 H -0.294 1.294 14 C 0.149 3.851 15 C -0.135 4.135 16 C 0.166 3.834 17 H 0.081 0.919 18 N -0.701 5.701 19 C 0.559 3.441 20 O -0.574 6.574 21 C -0.147 4.147 22 C -0.076 4.076 23 C -0.105 4.105 24 C 0.125 3.875 25 N -0.511 5.511 26 C 0.139 3.861 27 C -0.170 4.170 28 C -0.050 4.050 29 C -0.129 4.129 30 C -0.022 4.022 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.007 0.993 36 H 0.250 0.750 37 H 0.047 0.953 38 H 0.013 0.987 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.404 0.596 42 H 0.136 0.864 43 H 0.147 0.853 44 H 0.193 0.807 45 H 0.180 0.820 46 H 0.169 0.831 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.715 -12.052 -17.238 22.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 H 0.092 0.908 4 C 0.061 3.939 5 N -0.330 5.330 6 C -0.392 4.392 7 H 0.079 0.921 8 C -0.240 4.240 9 N -0.573 5.573 10 Si 0.790 3.210 11 H -0.196 1.196 12 H -0.216 1.216 13 H -0.221 1.221 14 C 0.023 3.977 15 C -0.175 4.175 16 C 0.062 3.938 17 H 0.099 0.901 18 N -0.352 5.352 19 C 0.348 3.652 20 O -0.455 6.455 21 C -0.150 4.150 22 C -0.096 4.096 23 C -0.124 4.124 24 C 0.004 3.996 25 N -0.220 5.220 26 C -0.033 4.033 27 C -0.189 4.189 28 C -0.076 4.076 29 C -0.131 4.131 30 C -0.042 4.042 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.024 0.976 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.031 0.969 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.242 0.758 42 H 0.154 0.846 43 H 0.165 0.835 44 H 0.210 0.790 45 H 0.197 0.803 46 H 0.187 0.813 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.734 -11.937 -16.909 22.465 hybrid contribution 0.680 0.754 0.914 1.366 sum -8.053 -11.183 -15.996 21.113 Atomic orbital electron populations 1.21669 0.93645 1.01879 1.01880 1.21944 0.96505 0.99875 0.95311 0.90785 1.20614 0.82359 0.95983 0.94905 1.44285 1.02278 1.69934 1.16504 1.19469 0.97985 1.34976 0.86743 0.92069 1.25663 0.99465 1.00251 0.98649 1.70142 1.26917 1.41454 1.18811 0.85306 0.78096 0.78424 0.79187 1.19558 1.21594 1.22103 1.20900 0.96272 0.94085 0.86432 1.22251 0.95732 1.01455 0.98020 1.20805 0.93604 0.81077 0.98322 0.90056 1.46060 1.66240 1.13990 1.08936 1.18394 0.77045 0.86163 0.83638 1.90711 1.52762 1.70677 1.31375 1.19919 1.06090 0.93946 0.95065 1.21021 0.96310 0.95119 0.97147 1.20822 1.00111 0.93503 0.97935 1.19201 0.96255 0.91139 0.93016 1.68117 1.14621 1.06109 1.33136 1.23769 0.91250 1.00736 0.87548 1.22342 0.99997 0.96110 1.00489 1.21958 0.93494 0.94378 0.97774 1.18996 1.03516 0.95245 0.95355 1.21551 0.92385 0.92018 0.98268 0.92754 0.92577 0.91697 0.92363 0.97559 0.94074 0.93411 0.96866 0.91936 0.91154 0.75788 0.84593 0.83527 0.79016 0.80274 0.81341 0.83092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 9.06 71.98 0.65 -3.24 16 2 C -0.12 -4.05 2.67 -10.72 -0.03 -4.08 16 3 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 4 C 0.19 8.29 4.30 86.36 0.37 8.66 16 5 N -0.61 -29.25 2.99 -699.10 -2.09 -31.34 16 6 C -0.26 -14.07 9.58 84.03 0.81 -13.26 16 7 H 0.06 3.28 7.89 -2.91 -0.02 3.25 16 8 C -0.04 -2.41 4.91 84.86 0.42 -1.99 16 9 N -0.93 -52.50 11.19 21.65 0.24 -52.26 16 10 Si 0.96 44.15 29.59 68.60 2.03 46.18 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 14 C 0.15 6.18 6.26 86.36 0.54 6.72 16 15 C -0.13 -4.77 5.77 30.67 0.18 -4.59 16 16 C 0.17 5.52 2.21 45.02 0.10 5.62 16 17 H 0.08 2.67 7.58 -2.39 -0.02 2.65 16 18 N -0.70 -22.08 3.55 -445.38 -1.58 -23.66 16 19 C 0.56 17.66 7.73 86.76 0.67 18.33 16 20 O -0.57 -20.73 15.97 -3.91 -0.06 -20.79 16 21 C -0.15 -4.02 5.87 -20.10 -0.12 -4.14 16 22 C -0.08 -1.94 9.44 22.27 0.21 -1.73 16 23 C -0.11 -2.61 9.95 22.30 0.22 -2.39 16 24 C 0.12 3.06 6.61 40.35 0.27 3.33 16 25 N -0.51 -11.46 10.33 -188.45 -1.95 -13.40 16 26 C 0.14 1.96 11.15 85.06 0.95 2.91 16 27 C -0.17 -1.77 10.03 22.14 0.22 -1.55 16 28 C -0.05 -0.71 9.89 22.53 0.22 -0.49 16 29 C -0.13 -2.80 5.74 -21.29 -0.12 -2.92 16 30 C -0.02 -0.54 9.35 22.82 0.21 -0.32 16 31 H 0.05 1.53 7.54 -2.38 -0.02 1.51 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 2.99 6.04 -2.38 -0.01 2.97 16 35 H 0.01 0.29 6.65 -2.39 -0.02 0.28 16 36 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 37 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 38 H 0.01 0.56 7.74 -2.39 -0.02 0.55 16 39 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 40 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.40 12.70 4.72 -92.70 -0.44 12.26 16 42 H 0.14 3.36 6.35 -2.91 -0.02 3.34 16 43 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 44 H 0.19 1.26 8.06 -2.91 -0.02 1.24 16 45 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 46 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 47 H 0.15 3.30 7.62 -2.91 -0.02 3.28 16 Total: -1.00 -68.15 376.72 2.91 -65.24 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.55 Total: 25.17 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 5.77 Total: 4.87 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -5.38 Total: -120.67 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.06 Total: -20.79 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -68.15 2.91 -65.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942595285.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.778 kcal (2) G-P(sol) polarization free energy of solvation -68.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds